2OKD - Sequence, Chains, Asymmetric and Biological Units

• Title: HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE
• Keywords: FOLD, JELLY-ROLL, SUPERFAMILY, DUTPASE-LIKE, FORMS TIGHT TRI THROUGH AN ADDITIONAL BETA-SHEET IN EACH SUBUNIT, SUBUNIT B SHEETS ARE ORTHOGONALLY PACKED AROUND THE THREE-FOLD AXIS,
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2OKD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE	A	124	971	0
2	Protein	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE	B	123	963	0
3	Protein	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE	C	125	977	0
4	Ligand	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE	A	4	0	13
5	Ligand	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE	B	1	0	4
6	Water			118	0	118
total				495	2911	135

Proteins

Unit 1	PRO 9 VAL 10 ARG 11 PHE 12 VAL 13 LYS 14 GLU 15 THR 16 ASN 17 ARG 18 ALA 19 LYS 20 SER 21 PRO 22 THR 23 ARG 24 GLN 25 SER 26 PRO 27 GLY 28 ALA 29 ALA 30 GLY 31 TYR 32 ASP 33 LEU 34 TYR 35 SER 36 ALA 37 TYR 38 ASP 39 TYR 40 THR 41 ILE 42 PRO 43 PRO 44 GLY 45 GLU 46 ARG 47 GLN 48 LEU 49 ILE 50 LYS 51 THR 52 ASP 53 ILE 54 SER 55 MET 56 SER 57 MET 58 PRO 59 LYS 60 PHE 61 CYS 62 TYR 63 GLY 64 ARG 65 ILE 66 ALA 67 PRO 68 ARG 69 SER 70 GLY 71 LEU 72 SER 73 LEU 74 LYS 75 GLY 76 ILE 77 ASP 78 ILE 79 GLY 80 GLY 81 GLY 82 VAL 83 ILE 84 ASP 85 GLU 86 ASP 87 TYR 88 ARG 89 GLY 90 ASN 91 ILE 92 GLY 93 VAL 94 ILE 95 LEU 96 ILE 97 ASN 98 ASN 99 GLY 100 LYS 101 CYS 102 THR 103 PHE 104 ASN 105 VAL 106 ASN 107 THR 108 GLY 109 ASP 110 ARG 111 ILE 112 ALA 113 GLN 114 LEU 115 ILE 116 TYR 117 GLN 118 ARG 119 ILE 120 TYR 121 TYR 122 PRO 123 GLU 124 LEU 125 GLU 126 GLU 127 VAL 128 GLN 129 SER 130 LEU 131 ASP 132
Unit 2	PRO 9 VAL 10 ARG 11 PHE 12 VAL 13 LYS 14 GLU 15 THR 16 ASN 17 ARG 18 ALA 19 LYS 20 SER 21 PRO 22 THR 23 ARG 24 GLN 25 SER 26 PRO 27 GLY 28 ALA 29 ALA 30 GLY 31 TYR 32 ASP 33 LEU 34 TYR 35 SER 36 ALA 37 TYR 38 ASP 39 TYR 40 THR 41 ILE 42 PRO 43 PRO 44 GLY 45 GLU 46 ARG 47 GLN 48 LEU 49 ILE 50 LYS 51 THR 52 ASP 53 ILE 54 SER 55 MET 56 SER 57 MET 58 PRO 59 LYS 60 PHE 61 CYS 62 TYR 63 GLY 64 ARG 65 ILE 66 ALA 67 PRO 68 ARG 69 SER 70 GLY 71 LEU 72 SER 73 LEU 74 LYS 75 GLY 76 ILE 77 ASP 78 ILE 79 GLY 80 GLY 81 GLY 82 VAL 83 ILE 84 ASP 85 GLU 86 ASP 87 TYR 88 ARG 89 GLY 90 ASN 91 ILE 92 GLY 93 VAL 94 ILE 95 LEU 96 ILE 97 ASN 98 ASN 99 GLY 100 LYS 101 CYS 102 THR 103 PHE 104 ASN 105 VAL 106 ASN 107 THR 108 GLY 109 ASP 110 ARG 111 ILE 112 ALA 113 GLN 114 LEU 115 ILE 116 TYR 117 GLN 118 ARG 119 ILE 120 TYR 121 TYR 122 PRO 123 GLU 124 LEU 125 GLU 126 GLU 127 VAL 128 GLN 129 SER 130 LEU 131
Unit 3	ASN 7 SER 8 PRO 9 VAL 10 ARG 11 PHE 12 VAL 13 LYS 14 GLU 15 THR 16 ASN 17 ARG 18 ALA 19 LYS 20 SER 21 PRO 22 THR 23 ARG 24 GLN 25 SER 26 PRO 27 GLY 28 ALA 29 ALA 30 GLY 31 TYR 32 ASP 33 LEU 34 TYR 35 SER 36 ALA 37 TYR 38 ASP 39 TYR 40 THR 41 ILE 42 PRO 43 PRO 44 GLY 45 GLU 46 ARG 47 GLN 48 LEU 49 ILE 50 LYS 51 THR 52 ASP 53 ILE 54 SER 55 MET 56 SER 57 MET 58 PRO 59 LYS 60 PHE 61 CYS 62 TYR 63 GLY 64 ARG 65 ILE 66 ALA 67 PRO 68 ARG 69 SER 70 GLY 71 LEU 72 SER 73 LEU 74 LYS 75 GLY 76 ILE 77 ASP 78 ILE 79 GLY 80 GLY 81 GLY 82 VAL 83 ILE 84 ASP 85 GLU 86 ASP 87 TYR 88 ARG 89 GLY 90 ASN 91 ILE 92 GLY 93 VAL 94 ILE 95 LEU 96 ILE 97 ASN 98 ASN 99 GLY 100 LYS 101 CYS 102 THR 103 PHE 104 ASN 105 VAL 106 ASN 107 THR 108 GLY 109 ASP 110 ARG 111 ILE 112 ALA 113 GLN 114 LEU 115 ILE 116 TYR 117 GLN 118 ARG 119 ILE 120 TYR 121 TYR 122 PRO 123 GLU 124 LEU 125 GLU 126 GLU 127 VAL 128 GLN 129 SER 130 LEU 131

Ligands

Unit 4	CL 200 EDO 201 EDO 202 EDO 204
Unit 5	EDO 203