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Sequence, Chains, Asymmetric and Biological Units

Title LUMAZINE SYNTHASE RIBH2 FROM MESORHIZOBIUM LOTI (GENE MLL728 PROT ENTRY Q986N2) COMPLEXED WITH INHIBITOR 5-NITRO-6-(D- RIBITYLAMINO)-2,4(1H,3H) PYRIMIDINEDIONE
Keywords LUMAZINE SYNTHASE, ALPHA-BETA, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2OBX     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  A 150 1145 0
2  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  B 147 1124 0
3  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  C 147 1116 0
4  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  D 146 1118 0
5  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  E 146 1111 0
6  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  F 148 1130 0
7  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  G 148 1126 0
8  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  H 147 1125 0
9  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  I 146 1112 0
10  Protein   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  J 146 1112 0
11  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  A 2 0 26
12  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  B 2 0 26
13  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  C 2 0 26
14  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  D 1 0 21
15  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  E 2 0 26
16  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  F 2 0 26
17  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  G 2 0 26
18  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  H 1 0 21
19  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  I 2 0 26
20  Ligand   6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE 1  J 3 0 31
21 Water     219 0 219
total       1709 11219 474

Proteins
Unit 1 HIS6 LYS7 ASP8 TYR9 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155
Unit 2 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155 ALA156
Unit 3 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155 ALA156
Unit 4 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155
Unit 5 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155
Unit 6 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155 ALA156 ALA157
Unit 7 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155 ALA156 ALA157
Unit 8 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155 ALA156
Unit 9 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155
Unit 10 GLU10 THR11 VAL12 ARG13 ILE14 ALA15 VAL16 VAL17 ARG18 ALA19 ARG20 TRP21 HIS22 ALA23 ASP24 ILE25 VAL26 ASP27 GLN28 CYS29 VAL30 SER31 ALA32 PHE33 GLU34 ALA35 GLU36 MET37 ALA38 ASP39 ILE40 GLY41 GLY42 ASP43 ARG44 PHE45 ALA46 VAL47 ASP48 VAL49 PHE50 ASP51 VAL52 PRO53 GLY54 ALA55 TYR56 GLU57 ILE58 PRO59 LEU60 HIS61 ALA62 ARG63 THR64 LEU65 ALA66 GLU67 THR68 GLY69 ARG70 TYR71 GLY72 ALA73 VAL74 LEU75 GLY76 THR77 ALA78 PHE79 VAL80 VAL81 ASN82 GLY83 GLY84 ILE85 TYR86 ARG87 HIS88 GLU89 PHE90 VAL91 ALA92 SER93 ALA94 VAL95 ILE96 ASP97 GLY98 MET99 MET100 ASN101 VAL102 GLN103 LEU104 SER105 THR106 GLY107 VAL108 PRO109 VAL110 LEU111 SER112 ALA113 VAL114 LEU115 THR116 PRO117 HIS118 ASN119 TYR120 HIS121 ASP122 SER123 ALA124 GLU125 HIS126 HIS127 ARG128 PHE129 PHE130 PHE131 GLU132 HIS133 PHE134 THR135 VAL136 LYS137 GLY138 LYS139 GLU140 ALA141 ALA142 ARG143 ALA144 CYS145 VAL146 GLU147 ILE148 LEU149 ALA150 ALA151 ARG152 GLU153 LYS154 ILE155

Ligands
Unit 11 INI201 PO41001
Unit 12 INI202 PO41002
Unit 13 INI203 PO41003
Unit 14 INI204
Unit 15 INI205 PO41004
Unit 16 INI206 PO41005
Unit 17 INI207 PO41006
Unit 18 INI208
Unit 19 INI209 PO41007
Unit 20 INI210 PO41008 PO41009

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany