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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF E. COLI TOPOISOMERASE III IN COMPLEX WITH AN 8- SINGLE STRANDED OLIGONUCLEOTIDE. FROZEN IN GLUCOSE PH 5.5
Keywords TOPOISOMERASE TYPE IA COMPLEX WITH SSDNA, ISOMERASE-DNA COMP
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2O5C     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3'  C 7 138 0
2  Other macromolecule   5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3'  D 7 138 0
3  Protein   DNA TOPOISOMERASE 3  A 634 5042 0
4  Protein   DNA TOPOISOMERASE 3  B 631 5020 0
5  Ligand   5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3'  D 1 0 9
6  Ligand   DNA TOPOISOMERASE 3  A 2 0 2
7 Water     356 0 356
total       1638 10338 367
Proteins
Unit 3 MET1 ARG2 LEU3 PHE4 ILE5 ALA6 GLU7 LYS8 PRO9 SER10 LEU11 ALA12 ARG13 ALA14 ILE15 ALA16 ASP17 VAL18 LEU19 PRO20 LYS21 PRO22 HIS23 ARG24 LYS25 GLY26 ASP27 GLY28 PHE29 ILE30 GLU31 CYS32 GLY33 ASN34 GLY35 GLN36 VAL37 VAL38 THR39 TRP40 CYS41 ILE42 GLY43 HIS44 LEU45 LEU46 GLU47 GLN48 ALA49 GLN50 PRO51 ASP52 ALA53 TYR54 ASP55 SER56 ARG57 TYR58 ALA59 ARG60 TRP61 ASN62 LEU63 ALA64 ASP65 LEU66 PRO67 ILE68 VAL69 PRO70 GLU71 LYS72 TRP73 GLN74 LEU75 GLN76 PRO77 ARG78 PRO79 SER80 VAL81 THR82 LYS83 GLN84 LEU85 ASN86 VAL87 ILE88 LYS89 ARG90 PHE91 LEU92 HIS93 GLU94 ALA95 SER96 GLU97 ILE98 VAL99 HIS100 ALA101 GLY102 ASP103 PRO104 ASP105 ARG106 GLU107 GLY108 GLN109 LEU110 LEU111 VAL112 ASP113 GLU114 VAL115 LEU116 ASP117 TYR118 LEU119 GLN120 LEU121 ALA122 PRO123 GLU124 LYS125 ARG126 GLN127 GLN128 VAL129 GLN130 ARG131 CYS132 LEU133 ILE134 ASN135 ASP136 LEU137 ASN138 PRO139 GLN140 ALA141 VAL142 GLU143 ARG144 ALA145 ILE146 ASP147 ARG148 LEU149 ARG150 SER151 ASN152 SER153 GLU154 PHE155 VAL156 PRO157 LEU158 CYS159 VAL160 SER161 ALA162 LEU163 ALA164 ARG165 ALA166 ARG167 ALA168 ASP169 TRP170 LEU171 TYR172 GLY173 ILE174 ASN175 MET176 THR177 ARG178 ALA179 TYR180 THR181 ILE182 LEU183 GLY184 ARG185 ASN186 ALA187 GLY188 TYR189 GLN190 GLY191 VAL192 LEU193 SER194 VAL195 GLY196 ARG197 VAL198 GLN199 THR200 PRO201 VAL202 LEU203 GLY204 LEU205 VAL206 VAL207 ARG208 ARG209 ASP210 GLU211 GLU212 ILE213 GLU214 ASN215 PHE216 VAL217 ALA218 LYS219 ASP220 PHE221 PHE222 GLU223 VAL224 LYS225 ALA226 HIS227 ILE228 VAL229 THR230 PRO231 ALA232 ASP233 GLU234 ARG235 PHE236 THR237 ALA238 ILE239 TRP240 GLN241 PRO242 SER243 GLU244 ALA245 CYS246 GLU247 PRO248 TYR249 GLN250 ASP251 GLU252 GLU253 GLY254 ARG255 LEU256 LEU257 HIS258 ARG259 PRO260 LEU261 ALA262 GLU263 HIS264 VAL265 VAL266 ASN267 ARG268 ILE269 SER270 GLY271 GLN272 PRO273 ALA274 ILE275 VAL276 THR277 SER278 TYR279 ASN280 ASP281 LYS282 ARG283 GLU284 SER285 GLU286 SER287 ALA288 PRO289 LEU290 PRO291 PHE292 SER293 LEU294 SER295 ALA296 LEU297 GLN298 ILE299 GLU300 ALA301 ALA302 LYS303 ARG304 PHE305 GLY306 LEU307 SER308 ALA309 GLN310 ASN311 VAL312 LEU313 ASP314 ILE315 CYS316 GLN317 LYS318 LEU319 TYR320 GLU321 THR322 HIS323 LYS324 LEU325 ILE326 THR327 TYR328 PRO329 ARG330 SER331 ASP332 CYS333 ARG334 TYR335 LEU336 PRO337 GLU338 GLU339 HIS340 PHE341 ALA342 GLY343 ARG344 HIS345 ALA346 VAL347 MET348 ASN349 ALA350 ILE351 SER352 VAL353 HIS354 ALA355 PRO356 ASP357 LEU358 LEU359 PRO360 GLN361 PRO362 VAL363 VAL364 ASP365 PRO366 ASP367 ILE368 ARG369 ASN370 ARG371 CYS372 TRP373 ASP374 ASP375 LYS376 LYS377 VAL378 ASP379 ALA380 HIS381 HIS382 ALA383 ILE384 ILE385 PRO386 THR387 ALA388 ARG389 SER390 SER391 ALA392 ILE393 ASN394 LEU395 THR396 GLU397 ASN398 GLU399 ALA400 LYS401 VAL402 TYR403 ASN404 LEU405 ILE406 ALA407 ARG408 GLN409 TYR410 LEU411 MET412 GLN413 PHE414 CYS415 PRO416 ASP417 ALA418 VAL419 PHE420 ARG421 LYS422 CYS423 VAL424 ILE425 GLU426 LEU427 ASP428 ILE429 ALA430 LYS431 GLY432 LYS433 PHE434 VAL435 ALA436 LYS437 ALA438 ARG439 PHE440 LEU441 ALA442 GLU443 ALA444 GLY445 TRP446 ARG447 THR448 LEU449 LEU450 GLY451 SER452 LYS453 GLU454 ARG455 ASP456 GLU457 GLU458 ASN459 ASP460 GLY461 THR462 PRO463 LEU464 PRO465 VAL466 VAL467 ALA468 LYS469 GLY470 ASP471 GLU472 LEU473 LEU474 CYS475 GLU476 LYS477 GLY478 GLU479 VAL480 VAL481 GLU482 ARG483 GLN484 THR485 GLN486 PRO487 PRO488 ARG489 HIS490 PHE491 THR492 ASP493 ALA494 THR495 LEU496 LEU497 SER498 ALA499 MET500 THR501 GLY502 ILE503 ALA504 ARG505 PHE506 VAL507 GLN508 ASP509 LYS510 ASP511 LEU512 LYS513 LYS514 ILE515 LEU516 ARG517 ALA518 THR519 ASP520 GLY521 LEU522 GLY523 THR524 GLU525 ALA526 THR527 ARG528 ALA529 GLY530 ILE531 ILE532 GLU533 LEU534 LEU535 PHE536 LYS537 ARG538 GLY539 PHE540 LEU541 THR542 LYS543 LYS544 GLY545 ARG546 TYR547 ILE548 HIS549 SER550 THR551 ASP552 ALA553 GLY554 LYS555 ALA556 LEU557 PHE558 HIS559 SER560 LEU561 PRO562 GLU563 MET564 ALA565 THR566 ARG567 PRO568 ASP569 MET570 THR571 ALA572 HIS573 TRP574 GLU575 SER576 VAL577 LEU578 THR579 GLN580 ILE581 SER582 GLU583 LYS584 GLN585 CYS586 ARG587 TYR588 GLN589 ASP590 PHE591 MET592 GLN593 PRO594 LEU595 VAL596 GLY597 THR598 LEU599 TYR600 GLN601 LEU602 ILE603 ASP604 GLN605 ALA606 LYS607 ARG608 THR609 PRO610 VAL611 ARG612 GLN613 PHE614 ARG615 GLY616 ILE617 VAL618 ALA619 PRO620 GLU646 VAL647 GLY648 SER649 GLY650 ALA651 ILE652 ALA653 HIS654 HIS655 HIS656 HIS657 HIS658 HIS659
Unit 4 MET1 ARG2 LEU3 PHE4 ILE5 ALA6 GLU7 LYS8 PRO9 SER10 LEU11 ALA12 ARG13 ALA14 ILE15 ALA16 ASP17 VAL18 LEU19 PRO20 LYS21 PRO22 HIS23 ARG24 LYS25 GLY26 ASP27 GLY28 PHE29 ILE30 GLU31 CYS32 GLY33 ASN34 GLY35 GLN36 VAL37 VAL38 THR39 TRP40 CYS41 ILE42 GLY43 HIS44 LEU45 LEU46 GLU47 GLN48 ALA49 GLN50 PRO51 ASP52 ALA53 TYR54 ASP55 SER56 ARG57 TYR58 ALA59 ARG60 TRP61 ASN62 LEU63 ALA64 ASP65 LEU66 PRO67 ILE68 VAL69 PRO70 GLU71 LYS72 TRP73 GLN74 LEU75 GLN76 PRO77 ARG78 PRO79 SER80 VAL81 THR82 LYS83 GLN84 LEU85 ASN86 VAL87 ILE88 LYS89 ARG90 PHE91 LEU92 HIS93 GLU94 ALA95 SER96 GLU97 ILE98 VAL99 HIS100 ALA101 GLY102 ASP103 PRO104 ASP105 ARG106 GLU107 GLY108 GLN109 LEU110 LEU111 VAL112 ASP113 GLU114 VAL115 LEU116 ASP117 TYR118 LEU119 GLN120 LEU121 ALA122 PRO123 GLU124 LYS125 ARG126 GLN127 GLN128 VAL129 GLN130 ARG131 CYS132 LEU133 ILE134 ASN135 ASP136 LEU137 ASN138 PRO139 GLN140 ALA141 VAL142 GLU143 ARG144 ALA145 ILE146 ASP147 ARG148 LEU149 ARG150 SER151 ASN152 SER153 GLU154 PHE155 VAL156 PRO157 LEU158 CYS159 VAL160 SER161 ALA162 LEU163 ALA164 ARG165 ALA166 ARG167 ALA168 ASP169 TRP170 LEU171 TYR172 GLY173 ILE174 ASN175 MET176 THR177 ARG178 ALA179 TYR180 THR181 ILE182 LEU183 GLY184 ARG185 ASN186 ALA187 GLY188 TYR189 GLN190 GLY191 VAL192 LEU193 SER194 VAL195 GLY196 ARG197 VAL198 GLN199 THR200 PRO201 VAL202 LEU203 GLY204 LEU205 VAL206 VAL207 ARG208 ARG209 ASP210 GLU211 GLU212 ILE213 GLU214 ASN215 PHE216 VAL217 ALA218 LYS219 ASP220 PHE221 PHE222 GLU223 VAL224 LYS225 ALA226 HIS227 ILE228 VAL229 THR230 PRO231 ALA232 ASP233 GLU234 ARG235 PHE236 THR237 ALA238 ILE239 TRP240 GLN241 PRO242 SER243 GLU244 ALA245 CYS246 GLU247 PRO248 TYR249 GLN250 ASP251 GLU252 GLU253 GLY254 ARG255 LEU256 LEU257 HIS258 ARG259 PRO260 LEU261 ALA262 GLU263 HIS264 VAL265 VAL266 ASN267 ARG268 ILE269 SER270 GLY271 GLN272 PRO273 ALA274 ILE275 VAL276 THR277 SER278 TYR279 ASN280 ASP281 LYS282 ARG283 GLU284 SER285 GLU286 SER287 ALA288 PRO289 LEU290 PRO291 PHE292 SER293 LEU294 SER295 ALA296 LEU297 GLN298 ILE299 GLU300 ALA301 ALA302 LYS303 ARG304 PHE305 GLY306 LEU307 SER308 ALA309 GLN310 ASN311 VAL312 LEU313 ASP314 ILE315 CYS316 GLN317 LYS318 LEU319 TYR320 GLU321 THR322 HIS323 LYS324 LEU325 ILE326 THR327 TYR328 PRO329 ARG330 SER331 ASP332 CYS333 ARG334 TYR335 LEU336 PRO337 GLU338 GLU339 HIS340 PHE341 ALA342 GLY343 ARG344 HIS345 ALA346 VAL347 MET348 ASN349 ALA350 ILE351 SER352 VAL353 HIS354 ALA355 PRO356 ASP357 LEU358 LEU359 PRO360 GLN361 PRO362 VAL363 VAL364 ASP365 PRO366 ASP367 ILE368 ARG369 ASN370 ARG371 CYS372 TRP373 ASP374 ASP375 LYS376 LYS377 VAL378 ASP379 ALA380 HIS381 HIS382 ALA383 ILE384 ILE385 PRO386 THR387 ALA388 ARG389 SER390 SER391 ALA392 ILE393 ASN394 LEU395 THR396 GLU397 ASN398 GLU399 ALA400 LYS401 VAL402 TYR403 ASN404 LEU405 ILE406 ALA407 ARG408 GLN409 TYR410 LEU411 MET412 GLN413 PHE414 CYS415 PRO416 ASP417 ALA418 VAL419 PHE420 ARG421 LYS422 CYS423 VAL424 ILE425 GLU426 LEU427 ASP428 ILE429 ALA430 LYS431 GLY432 LYS433 PHE434 VAL435 ALA436 LYS437 ALA438 ARG439 PHE440 LEU441 ALA442 GLU443 ALA444 GLY445 TRP446 ARG447 THR448 LEU449 LEU450 GLY451 SER452 LYS453 GLU454 ARG455 ASP456 GLU457 GLU458 ASN459 ASP460 GLY461 THR462 PRO463 LEU464 PRO465 VAL466 VAL467 ALA468 LYS469 GLY470 ASP471 GLU472 LEU473 LEU474 CYS475 GLU476 LYS477 GLY478 GLU479 VAL480 VAL481 GLU482 ARG483 GLN484 THR485 GLN486 PRO487 PRO488 ARG489 HIS490 PHE491 THR492 ASP493 ALA494 THR495 LEU496 LEU497 SER498 ALA499 MET500 THR501 GLY502 ILE503 ALA504 ARG505 PHE506 VAL507 GLN508 ASP509 LYS510 ASP511 LEU512 LYS513 LYS514 ILE515 LEU516 ARG517 ALA518 THR519 ASP520 GLY521 LEU522 GLY523 THR524 GLU525 ALA526 THR527 ARG528 ALA529 GLY530 ILE531 ILE532 GLU533 LEU534 LEU535 PHE536 LYS537 ARG538 GLY539 PHE540 LEU541 THR542 LYS543 LYS544 GLY545 ARG546 TYR547 ILE548 HIS549 SER550 THR551 ASP552 ALA553 GLY554 LYS555 ALA556 LEU557 PHE558 HIS559 SER560 LEU561 PRO562 GLU563 MET564 ALA565 THR566 ARG567 PRO568 ASP569 MET570 THR571 ALA572 HIS573 TRP574 GLU575 SER576 VAL577 LEU578 THR579 GLN580 ILE581 SER582 GLU583 LYS584 GLN585 CYS586 ARG587 TYR588 GLN589 ASP590 PHE591 MET592 GLN593 PRO594 LEU595 VAL596 GLY597 THR598 LEU599 TYR600 GLN601 LEU602 ILE603 ASP604 GLN605 ALA606 LYS607 ARG608 THR609 PRO610 VAL611 ARG612 GLN613 PHE614 ARG615 GLY616 ILE617 VAL618 GLU646 VAL647 GLY648 SER649 GLY650 ALA651 ILE652 ALA653 HIS654 HIS655 HIS656 HIS657 HIS658
Other macromolecules
Unit 1 DC1 DG2 DC3 DA4 DA5 DC6 DT7
Unit 2 DC1 DG2 DC3 DA4 DA5 DC6 DT7
Ligands
Unit 5 TDR799
Unit 6 CL800 CL801
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany