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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE IN PRESENCE OF PAROMAMINE DERIVATIVE NB30
Keywords AMINOGLYCOSIDE, ANTIBIOTICS, RIBOSOME, DECODING SITE, HOMO SAPIENS, EUKARYOTE, CYTOPLASMIC, TRANSLATION INHIBITION, STOP CODON READTHROUGH, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2O3Y     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 22 469 0
2  RNA    B 21 449 0
3  Ligand   RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP *UP*CP*GP*C)-3')  A 1 0 14
4 Water     56 0 56
total       100 918 70

Nucleic acids
Unit 1 U2 G3 C4 G5 U6 C7 G8 C9 U10 C11 C12 G13 G14 A15 A16 A17 A18 G19 U20 C21 G22 C23
Unit 2 G26 C27 G28 U29 C30 G31 C32 U33 C34 C35 G36 G37 A38 A39 A40 A41 G42 U43 C44 G45 C46

Ligands
Unit 3 SPM51

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany