Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS C COFACTOR
Keywords STRUCTURAL PROTEIN/RNA, STRUCTURAL PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2NZ4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    E 13 240 23
2  RNA    P 141 2947 32
3  RNA    F 13 254 23
4  RNA    Q 141 2971 32
5  RNA    G 13 254 23
6  RNA    R 141 2979 32
7  RNA    H 13 244 23
8  RNA    S 141 2971 32
9  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  A 90 720 0
10  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  B 94 749 0
11  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  C 90 723 0
12  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  D 90 716 0
13  Ligand   GLMS RIBOZYME  P 5 0 20
14  Ligand   SUBSTRATE STRAND RNA 13-MER  F 2 0 17
15  Ligand   GLMS RIBOZYME  Q 3 0 3
16  Ligand   SUBSTRATE STRAND RNA 13-MER  G 2 0 17
17  Ligand   GLMS RIBOZYME  R 3 0 3
18  Ligand   SUBSTRATE STRAND RNA 13-MER  H 3 0 18
19  Ligand   GLMS RIBOZYME  S 2 0 2
20 Water     206 0 206
total       1206 15768 506
Proteins
Unit 9 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96
Unit 10 GLU5 THR6 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96 MET97 LYS98
Unit 11 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96 MET97
Unit 12 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96
Nucleic acids
Unit 1 A-1 A2M0 G1 C2 G3 C4 C5 A6 G7 A8 A9 C10 U11
Unit 2 GTP12 G13 C14 A15 C16 C17A A17B U17C U17D G17E C17F A17G C17H U17I C17J C17K G17L G18 U19 G20 C21 C22 A23 G24 U25 U26 G27 A28 C29 G30 A31 G32 G33 U34 G35 G36 G37 G38 U39 U40 U41 A42 U43 C44 G45 A46 G47 A48 U49 U50 U51 C52 G53 G54 C55 G56 G57 A58 U59 G60 A61 C62 U63 C64 C65 C66 G67 G68 U69 U70 G71 U72 U73 C74 A75 U76 C77 A78 C79 A80 A81 C82 C83 G84 C85 A86 A87 G88 C89 U90 U91 U92 U93 A94 C95 U96 U97 A98 A99 A100 U101 C102 A103 U104 U105 A106 A107 G108 G109 U110 G111 A112 C113 U114 U115 A116 G117 U118 G119 G120 A121 C122 A123 A124 A125 G126 G127 U128 G129 A130 A131 A132 G133 U134 G135 U136 G137 A138 U139 G140 A141
Unit 3 A-1 A2M0 G1 C2 G3 C4 C5 A6 G7 A8 A9 C10 U11
Unit 4 GTP12 G13 C14 A15 C16 C17A A17B U17C U17D G17E C17F A17G C17H U17I C17J C17K G17L G18 U19 G20 C21 C22 A23 G24 U25 U26 G27 A28 C29 G30 A31 G32 G33 U34 G35 G36 G37 G38 U39 U40 U41 A42 U43 C44 G45 A46 G47 A48 U49 U50 U51 C52 G53 G54 C55 G56 G57 A58 U59 G60 A61 C62 U63 C64 C65 C66 G67 G68 U69 U70 G71 U72 U73 C74 A75 U76 C77 A78 C79 A80 A81 C82 C83 G84 C85 A86 A87 G88 C89 U90 U91 U92 U93 A94 C95 U96 U97 A98 A99 A100 U101 C102 A103 U104 U105 A106 A107 G108 G109 U110 G111 A112 C113 U114 U115 A116 G117 U118 G119 G120 A121 C122 A123 A124 A125 G126 G127 U128 G129 A130 A131 A132 G133 U134 G135 U136 G137 A138 U139 G140 A141
Unit 5 A-1 A2M0 G1 C2 G3 C4 C5 A6 G7 A8 A9 C10 U11
Unit 6 GTP12 G13 C14 A15 C16 C17A A17B U17C U17D G17E C17F A17G C17H U17I C17J C17K G17L G18 U19 G20 C21 C22 A23 G24 U25 U26 G27 A28 C29 G30 A31 G32 G33 U34 G35 G36 G37 G38 U39 U40 U41 A42 U43 C44 G45 A46 G47 A48 U49 U50 U51 C52 G53 G54 C55 G56 G57 A58 U59 G60 A61 C62 U63 C64 C65 C66 G67 G68 U69 U70 G71 U72 U73 C74 A75 U76 C77 A78 C79 A80 A81 C82 C83 G84 C85 A86 A87 G88 C89 U90 U91 U92 U93 A94 C95 U96 U97 A98 A99 A100 U101 C102 A103 U104 U105 A106 A107 G108 G109 U110 G111 A112 C113 U114 U115 A116 G117 U118 G119 G120 A121 C122 A123 A124 A125 G126 G127 U128 G129 A130 A131 A132 G133 U134 G135 U136 G137 A138 U139 G140 A141
Unit 7 A-1 A2M0 G1 C2 G3 C4 C5 A6 G7 A8 A9 C10 U11
Unit 8 GTP12 G13 C14 A15 C16 C17A A17B U17C U17D G17E C17F A17G C17H U17I C17J C17K G17L G18 U19 G20 C21 C22 A23 G24 U25 U26 G27 A28 C29 G30 A31 G32 G33 U34 G35 G36 G37 G38 U39 U40 U41 A42 U43 C44 G45 A46 G47 A48 U49 U50 U51 C52 G53 G54 C55 G56 G57 A58 U59 G60 A61 C62 U63 C64 C65 C66 G67 G68 U69 U70 G71 U72 U73 C74 A75 U76 C77 A78 C79 A80 A81 C82 C83 G84 C85 A86 A87 G88 C89 U90 U91 U92 U93 A94 C95 U96 U97 A98 A99 A100 U101 C102 A103 U104 U105 A106 A107 G108 G109 U110 G111 A112 C113 U114 U115 A116 G117 U118 G119 G120 A121 C122 A123 A124 A125 G126 G127 U128 G129 A130 A131 A132 G133 U134 G135 U136 G137 A138 U139 G140 A141
Ligands
Unit 13 GLP5001 MG9005 MG9006 MG9009 MG9010
Unit 14 GLP5002 MG9011
Unit 15 MG9007 MG9008 MG9012
Unit 16 GLP5003 MG9013
Unit 17 MG9001 MG9002 MG9014
Unit 18 GLP5004 MG9015 MG9016
Unit 19 MG9003 MG9004
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany