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Sequence, Chains, Asymmetric and Biological Units

Title HIV-1 GP120 ENVELOPE GLYCOPROTEIN (I109C, T257S, S334A, S375 COMPLEXED WITH CD4 AND ANTIBODY 17B
Keywords HIV, GP120, ANTIBODY, CD4, VIRAL PROTEIN-IMMUNE SYSTEM COMPL
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2NY1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENVELOPE GLYCOPROTEIN GP120  A 305 2362 0
2  Protein   T-CELL SURFACE GLYCOPROTEIN CD4  B 181 1412 0
3  Protein   ANTIBODY 17B, LIGHT CHAIN  C 214 1646 0
4  Protein   ANTIBODY 17B, HEAVY CHAIN  D 223 1681 0
5  Ligand    E 2 0 23
6  Ligand   ENVELOPE GLYCOPROTEIN GP120  A 14 0 196
7 Water     532 0 532
total       1471 7101 751
Proteins
Unit 1 GLU83 VAL84 VAL85 LEU86 VAL87 ASN88 VAL89 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASP99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 GLU106 ASP107 ILE108 CYS109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124 LEU125 CYS126 VAL127 GLY128 ALA129 GLY194 SER195 CYS196 ASN197 THR198 SER199 VAL200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 ASN229 ASN230 LYS231 THR232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 THR240 ASN241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 ARG252 PRO253 VAL254 VAL255 SER256 SER257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 VAL271 ILE272 ARG273 SER274 VAL275 ASN276 PHE277 THR278 ASP279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 GLN287 LEU288 ASN289 THR290 SER291 VAL292 GLU293 ILE294 ASN295 CYS296 THR297 GLY298 ALA299 GLY329 HIS330 CYS331 ASN332 ILE333 ALA334 ARG335 ALA336 LYS337 TRP338 ASN339 ASN340 THR341 LEU342 LYS343 GLN344 ILE345 ALA346 SER347 LYS348 LEU349 ARG350 GLU351 GLN352 PHE353 GLY354 ASN355 ASN356 LYS357 THR358 ILE359 ILE360 PHE361 LYS362 GLN363 SER364 SER365 GLY366 GLY367 ASP368 PRO369 GLU370 ILE371 VAL372 THR373 HIS374 TRP375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 SER387 THR388 GLN389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 PHE396 ASN397 GLY410 SER411 ASP412 THR413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 CYS428 LYS429 VAL430 GLY431 LYS432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 SER440 GLY441 GLN442 ILE443 ARG444 CYS445 SER446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 LEU453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 ASN460 SER461 ASN462 ASN463 GLU464 SER465 GLU466 ILE467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492
Unit 2 LYS1001 LYS1002 VAL1003 VAL1004 LEU1005 GLY1006 LYS1007 LYS1008 GLY1009 ASP1010 THR1011 VAL1012 GLU1013 LEU1014 THR1015 CYS1016 THR1017 ALA1018 SER1019 GLN1020 LYS1021 LYS1022 SER1023 ILE1024 GLN1025 PHE1026 HIS1027 TRP1028 LYS1029 ASN1030 SER1031 ASN1032 GLN1033 ILE1034 LYS1035 ILE1036 LEU1037 GLY1038 ASN1039 GLN1040 GLY1041 SER1042 PHE1043 LEU1044 THR1045 LYS1046 GLY1047 PRO1048 SER1049 LYS1050 LEU1051 ASN1052 ASP1053 ARG1054 ALA1055 ASP1056 SER1057 ARG1058 ARG1059 SER1060 LEU1061 TRP1062 ASP1063 GLN1064 GLY1065 ASN1066 PHE1067 PRO1068 LEU1069 ILE1070 ILE1071 LYS1072 ASN1073 LEU1074 LYS1075 ILE1076 GLU1077 ASP1078 SER1079 ASP1080 THR1081 TYR1082 ILE1083 CYS1084 GLU1085 VAL1086 GLU1087 ASP1088 GLN1089 LYS1090 GLU1091 GLU1092 VAL1093 GLN1094 LEU1095 LEU1096 VAL1097 PHE1098 GLY1099 LEU1100 THR1101 ALA1102 ASN1103 SER1104 ASP1105 THR1106 HIS1107 LEU1108 LEU1109 GLN1110 GLY1111 GLN1112 SER1113 LEU1114 THR1115 LEU1116 THR1117 LEU1118 GLU1119 SER1120 PRO1121 PRO1122 GLY1123 SER1124 SER1125 PRO1126 SER1127 VAL1128 GLN1129 CYS1130 ARG1131 SER1132 PRO1133 ARG1134 GLY1135 LYS1136 ASN1137 ILE1138 GLN1139 GLY1140 GLY1141 LYS1142 THR1143 LEU1144 SER1145 VAL1146 SER1147 GLN1148 LEU1149 GLU1150 LEU1151 GLN1152 ASP1153 SER1154 GLY1155 THR1156 TRP1157 THR1158 CYS1159 THR1160 VAL1161 LEU1162 GLN1163 ASN1164 GLN1165 LYS1166 LYS1167 VAL1168 GLU1169 PHE1170 LYS1171 ILE1172 ASP1173 ILE1174 VAL1175 VAL1176 LEU1177 ALA1178 PHE1179 GLN1180 LYS1181
Unit 3 ASP2001 ILE2002 VAL2003 MET2004 THR2005 GLN2006 SER2007 PRO2008 ALA2009 THR2010 LEU2011 SER2012 VAL2013 SER2014 PRO2015 GLY2016 GLU2017 ARG2018 ALA2019 THR2020 LEU2021 SER2022 CYS2023 ARG2024 ALA2025 SER2026 GLU2027 SER2028 VAL2029 SER2030 SER2031 ASP2032 LEU2033 ALA2034 TRP2035 TYR2036 GLN2037 GLN2038 LYS2039 PRO2040 GLY2041 GLN2042 ALA2043 PRO2044 ARG2045 LEU2046 LEU2047 ILE2048 TYR2049 GLY2050 ALA2051 SER2052 THR2053 ARG2054 ALA2055 THR2056 GLY2057 VAL2058 PRO2059 ALA2060 ARG2061 PHE2062 SER2063 GLY2064 SER2065 GLY2066 SER2067 GLY2068 ALA2069 GLU2070 PHE2071 THR2072 LEU2073 THR2074 ILE2075 SER2076 SER2077 LEU2078 GLN2079 SER2080 GLU2081 ASP2082 PHE2083 ALA2084 VAL2085 TYR2086 TYR2087 CYS2088 GLN2089 GLN2090 TYR2091 ASN2092 ASN2093 TRP2094 PRO2095 PRO2096 ARG2097 TYR2098 THR2099 PHE2100 GLY2101 GLN2102 GLY2103 THR2104 ARG2105 LEU2106 GLU2107 ILE2108 LYS2109 ARG2110 THR2111 VAL2112 ALA2113 ALA2114 PRO2115 SER2116 VAL2117 PHE2118 ILE2119 PHE2120 PRO2121 PRO2122 SER2123 ASP2124 GLU2125 GLN2126 LEU2127 LYS2128 SER2129 GLY2130 THR2131 ALA2132 SER2133 VAL2134 VAL2135 CYS2136 LEU2137 LEU2138 ASN2139 ASN2140 PHE2141 TYR2142 PRO2143 ARG2144 GLU2145 ALA2146 LYS2147 VAL2148 GLN2149 TRP2150 LYS2151 VAL2152 ASP2153 ASN2154 ALA2155 LEU2156 GLN2157 SER2158 GLY2159 ASN2160 SER2161 GLN2162 GLU2163 SER2164 VAL2165 THR2166 GLU2167 GLN2168 ASP2169 SER2170 LYS2171 ASP2172 SER2173 THR2174 TYR2175 SER2176 LEU2177 SER2178 SER2179 THR2180 LEU2181 THR2182 LEU2183 SER2184 LYS2185 ALA2186 ASP2187 TYR2188 GLU2189 LYS2190 HIS2191 LYS2192 VAL2193 TYR2194 ALA2195 CYS2196 GLU2197 VAL2198 THR2199 HIS2200 GLN2201 GLY2202 LEU2203 SER2204 SER2205 PRO2206 VAL2207 THR2208 LYS2209 SER2210 PHE2211 ASN2212 ARG2213 GLY2214
Unit 4 GLU3001 VAL3002 GLN3003 LEU3004 VAL3005 GLU3006 SER3007 GLY3008 ALA3009 GLU3010 VAL3011 LYS3012 LYS3013 PRO3014 GLY3015 SER3016 SER3017 VAL3018 LYS3019 VAL3020 SER3021 CYS3022 LYS3023 ALA3024 SER3025 GLY3026 ASP3027 THR3028 PHE3029 ILE3030 ARG3031 TYR3032 SER3033 PHE3034 THR3035 TRP3036 VAL3037 ARG3038 GLN3039 ALA3040 PRO3041 GLY3042 GLN3043 GLY3044 LEU3045 GLU3046 TRP3047 MET3048 GLY3049 ARG3050 ILE3051 ILE3052 THR3053 ILE3054 LEU3055 ASP3056 VAL3057 ALA3058 HIS3059 TYR3060 ALA3061 PRO3062 HIS3063 LEU3064 GLN3065 GLY3066 ARG3067 VAL3068 THR3069 ILE3070 THR3071 ALA3072 ASP3073 LYS3074 SER3075 THR3076 SER3077 THR3078 VAL3079 TYR3080 LEU3081 GLU3082 LEU3083 ARG3084 ASN3085 LEU3086 ARG3087 SER3088 ASP3089 ASP3090 THR3091 ALA3092 VAL3093 TYR3094 PHE3095 CYS3096 ALA3097 GLY3098 VAL3099 TYR3100 GLU3101 GLY3102 GLU3103 ALA3104 ASP3105 GLU3106 GLY3107 GLU3108 TYR3109 ASP3110 ASN3111 ASN3112 GLY3113 PHE3114 LEU3115 LYS3116 HIS3117 TRP3118 GLY3119 GLN3120 GLY3121 THR3122 LEU3123 VAL3124 THR3125 VAL3126 SER3127 SER3128 ALA3129 SER3130 THR3131 LYS3132 GLY3133 PRO3134 SER3135 VAL3136 PHE3137 PRO3138 LEU3139 ALA3140 PRO3141 GLY3148 GLY3149 THR3150 ALA3151 ALA3152 LEU3153 GLY3154 CYS3155 LEU3156 VAL3157 LYS3158 ASP3159 TYR3160 PHE3161 PRO3162 GLU3163 PRO3164 VAL3165 THR3166 VAL3167 SER3168 TRP3169 ASN3170 SER3171 GLY3172 ALA3173 LEU3174 THR3175 SER3176 GLY3177 VAL3178 HIS3179 THR3180 PHE3181 PRO3182 ALA3183 VAL3184 LEU3185 GLN3186 SER3187 SER3188 GLY3189 LEU3190 TYR3191 SER3192 LEU3193 SER3194 SER3195 VAL3196 VAL3197 THR3198 VAL3199 PRO3200 SER3201 SER3202 SER3203 LEU3204 GLY3205 THR3206 GLN3207 THR3208 TYR3209 ILE3210 CYS3211 ASN3212 VAL3213 ASN3214 HIS3215 LYS3216 PRO3217 SER3218 ASN3219 THR3220 LYS3221 VAL3222 ASP3223 LYS3224 LYS3225 VAL3226 GLU3227 PRO3228 LYS3229
Ligands
Unit 5 GLC1 FRU2
Unit 6 NAG588 NAG697 NAG730 NAG734 NAG741 NAG762 NAG776 NAG789 NAG795 NAG839 NAG886 NAG892 NAG948 NAG963
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany