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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PHENYLPYRUVATE DECARBOXYLASE OF AZOSPIR BRASILENSE
Keywords THIAMINE PYROPHOSPHATE, ASYMMETRIC DIMER OF DIMERS, OPEN ACT LOOPS, LYASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2NXW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PHENYL-3-PYRUVATE DECARBOXYLASE  A 537 3960 0
2  Protein   PHENYL-3-PYRUVATE DECARBOXYLASE  B 529 3903 0
3  Ligand   PHENYL-3-PYRUVATE DECARBOXYLASE  A 4 0 34
4  Ligand   PHENYL-3-PYRUVATE DECARBOXYLASE  B 5 0 40
5 Water     1337 0 1337
total       2412 7863 1411

Proteins
Unit 1 LEU-6 VAL-5 PRO-4 ARG-3 GLY-2 SER-1 HIS0 MET1 LYS2 LEU3 ALA4 GLU5 ALA6 LEU7 LEU8 ARG9 ALA10 LEU11 LYS12 ASP13 ARG14 GLY15 ALA16 GLN17 ALA18 MET19 PHE20 GLY21 ILE22 PRO23 GLY24 ASP25 PHE26 ALA27 LEU28 PRO29 PHE30 PHE31 LYS32 VAL33 ALA34 GLU35 GLU36 THR37 GLN38 ILE39 LEU40 PRO41 LEU42 HIS43 THR44 LEU45 SER46 HIS47 GLU48 PRO49 ALA50 VAL51 GLY52 PHE53 ALA54 ALA55 ASP56 ALA57 ALA58 ALA59 ARG60 TYR61 SER62 SER63 THR64 LEU65 GLY66 VAL67 ALA68 ALA69 VAL70 THR71 TYR72 GLY73 ALA74 GLY75 ALA76 PHE77 ASN78 MET79 VAL80 ASN81 ALA82 VAL83 ALA84 GLY85 ALA86 TYR87 ALA88 GLU89 LYS90 SER91 PRO92 VAL93 VAL94 VAL95 ILE96 SER97 GLY98 ALA99 PRO100 GLY101 THR102 THR103 GLU104 GLY105 GLY108 LEU109 LEU110 LEU111 ASP119 THR120 GLN121 PHE122 GLN123 VAL124 PHE125 LYS126 GLU127 ILE128 THR129 VAL130 ALA131 GLN132 ALA133 ARG134 LEU135 ASP136 ASP137 PRO138 ALA139 LYS140 ALA141 PRO142 ALA143 GLU144 ILE145 ALA146 ARG147 VAL148 LEU149 GLY150 ALA151 ALA152 ARG153 ALA154 GLN155 SER156 ARG157 PRO158 VAL159 TYR160 LEU161 GLU162 ILE163 PRO164 ARG165 ASN166 MET167 VAL168 ASN169 ALA170 GLU171 VAL172 GLU173 PRO174 VAL175 GLY176 ASP177 ASP178 PRO179 ALA180 TRP181 PRO182 VAL183 ASP184 ARG185 ASP186 ALA187 LEU188 ALA189 ALA190 CYS191 ALA192 ASP193 GLU194 VAL195 LEU196 ALA197 ALA198 MET199 ARG200 SER201 ALA202 THR203 SER204 PRO205 VAL206 LEU207 MET208 VAL209 CYS210 VAL211 GLU212 VAL213 ARG214 ARG215 TYR216 GLY217 LEU218 GLU219 ALA220 LYS221 VAL222 ALA223 GLU224 LEU225 ALA226 GLN227 ARG228 LEU229 GLY230 VAL231 PRO232 VAL233 VAL234 THR235 THR236 PHE237 MET238 GLY239 ARG240 GLY241 LEU242 LEU243 ALA244 ASP245 ALA246 PRO247 THR248 PRO249 PRO250 LEU251 GLY252 THR253 TYR254 ILE255 GLY256 VAL257 ALA258 GLY259 ASP260 ALA261 GLU262 ILE263 THR264 ARG265 LEU266 VAL267 GLU268 GLU269 SER270 ASP271 GLY272 LEU273 PHE274 LEU275 LEU276 GLY277 ALA278 ILE279 LEU280 SER281 ASP282 THR283 ASN284 PHE285 ALA286 VAL287 SER288 GLN289 ARG290 LYS291 ILE292 ASP293 LEU294 ARG295 LYS296 THR297 ILE298 HIS299 ALA300 PHE301 ASP302 ARG303 ALA304 VAL305 THR306 LEU307 GLY308 TYR309 HIS310 THR311 TYR312 ALA313 ASP314 ILE315 PRO316 LEU317 ALA318 GLY319 LEU320 VAL321 ASP322 ALA323 LEU324 LEU325 GLU326 ARG327 LEU328 PRO329 PRO330 SER331 ASP332 ARG333 THR334 THR335 ARG336 GLY337 LYS338 GLU339 PRO340 HIS341 ALA342 TYR343 PRO344 THR345 GLY346 LEU347 GLN348 ALA349 ASP350 GLY351 GLU352 PRO353 ILE354 ALA355 PRO356 MET357 ASP358 ILE359 ALA360 ARG361 ALA362 VAL363 ASN364 ASP365 ARG366 VAL367 ARG368 ALA369 GLY370 GLN371 GLU372 PRO373 LEU374 LEU375 ILE376 ALA377 ALA378 ASP379 MET380 GLY381 ASP382 CYS383 LEU384 PHE385 THR386 ALA387 MET388 ASP389 MET390 ILE391 ASP392 ALA393 GLY394 LEU395 MET396 ALA397 PRO398 GLY399 TYR400 TYR401 ALA402 GLY403 MET404 GLY405 PHE406 GLY407 VAL408 PRO409 ALA410 GLY411 ILE412 GLY413 ALA414 GLN415 CYS416 VAL417 SER418 GLY419 GLY420 LYS421 ARG422 ILE423 LEU424 THR425 VAL426 VAL427 GLY428 ASP429 GLY430 ALA431 PHE432 GLN433 MET434 THR435 GLY436 TRP437 GLU438 LEU439 GLY440 ASN441 CYS442 ARG443 ARG444 LEU445 GLY446 ILE447 ASP448 PRO449 ILE450 VAL451 ILE452 LEU453 PHE454 ASN455 ASN456 ALA457 SER458 TRP459 GLU460 MET461 LEU462 ARG463 THR464 PHE465 GLN466 PRO467 GLU468 SER469 ALA470 PHE471 ASN472 ASP473 LEU474 ASP475 ASP476 TRP477 ARG478 PHE479 ALA480 ASP481 MET482 ALA483 ALA484 GLY485 MET486 GLY487 GLY488 ASP489 GLY490 VAL491 ARG492 VAL493 ARG494 THR495 ARG496 ALA497 GLU498 LEU499 LYS500 ALA501 ALA502 LEU503 ASP504 LYS505 ALA506 PHE507 ALA508 THR509 ARG510 GLY511 ARG512 PHE513 GLN514 LEU515 ILE516 GLU517 ALA518 MET519 ILE520 PRO521 ARG522 GLY523 VAL524 LEU525 SER526 ASP527 THR528 LEU529 ALA530 ARG531 PHE532 VAL533 GLN534 GLY535 GLN536 LYS537 ARG538 LEU539
Unit 2 GLY-2 SER-1 HIS0 MET1 LYS2 LEU3 ALA4 GLU5 ALA6 LEU7 LEU8 ARG9 ALA10 LEU11 LYS12 ASP13 ARG14 GLY15 ALA16 GLN17 ALA18 MET19 PHE20 GLY21 ILE22 PRO23 GLY24 ASP25 PHE26 ALA27 LEU28 PRO29 PHE30 PHE31 LYS32 VAL33 ALA34 GLU35 GLU36 THR37 GLN38 ILE39 LEU40 PRO41 LEU42 HIS43 THR44 LEU45 SER46 HIS47 GLU48 PRO49 ALA50 VAL51 GLY52 PHE53 ALA54 ALA55 ASP56 ALA57 ALA58 ALA59 ARG60 TYR61 SER62 SER63 THR64 LEU65 GLY66 VAL67 ALA68 ALA69 VAL70 THR71 TYR72 GLY73 ALA74 GLY75 ALA76 PHE77 ASN78 MET79 VAL80 ASN81 ALA82 VAL83 ALA84 GLY85 ALA86 TYR87 ALA88 GLU89 LYS90 SER91 PRO92 VAL93 VAL94 VAL95 ILE96 SER97 GLY98 ALA99 PRO100 GLY101 THR102 THR103 GLU104 LEU109 LEU110 ASP119 THR120 GLN121 PHE122 GLN123 VAL124 PHE125 LYS126 GLU127 ILE128 THR129 VAL130 ALA131 GLN132 ALA133 ARG134 LEU135 ASP136 ASP137 PRO138 ALA139 LYS140 ALA141 PRO142 ALA143 GLU144 ILE145 ALA146 ARG147 VAL148 LEU149 GLY150 ALA151 ALA152 ARG153 ALA154 GLN155 SER156 ARG157 PRO158 VAL159 TYR160 LEU161 GLU162 ILE163 PRO164 ARG165 ASN166 MET167 VAL168 ASN169 ALA170 GLU171 VAL172 GLU173 PRO174 VAL175 GLY176 ASP177 ASP178 PRO179 ALA180 TRP181 PRO182 VAL183 ASP184 ARG185 ASP186 ALA187 LEU188 ALA189 ALA190 CYS191 ALA192 ASP193 GLU194 VAL195 LEU196 ALA197 ALA198 MET199 ARG200 SER201 ALA202 THR203 SER204 PRO205 VAL206 LEU207 MET208 VAL209 CYS210 VAL211 GLU212 VAL213 ARG214 ARG215 TYR216 GLY217 LEU218 GLU219 ALA220 LYS221 VAL222 ALA223 GLU224 LEU225 ALA226 GLN227 ARG228 LEU229 GLY230 VAL231 PRO232 VAL233 VAL234 THR235 THR236 PHE237 MET238 GLY239 ARG240 GLY241 LEU242 LEU243 ALA244 ASP245 ALA246 PRO247 THR248 PRO249 PRO250 LEU251 GLY252 THR253 TYR254 ILE255 GLY256 VAL257 ALA258 GLY259 ASP260 ALA261 GLU262 ILE263 THR264 ARG265 LEU266 VAL267 GLU268 GLU269 SER270 ASP271 GLY272 LEU273 PHE274 LEU275 LEU276 GLY277 ALA278 ILE279 LEU280 SER281 ASP282 THR283 ASN284 PHE285 ALA286 VAL287 SER288 GLN289 ARG290 LYS291 ILE292 ASP293 LEU294 ARG295 LYS296 THR297 ILE298 HIS299 ALA300 PHE301 ASP302 ARG303 ALA304 VAL305 THR306 LEU307 GLY308 TYR309 HIS310 THR311 TYR312 ALA313 ASP314 ILE315 PRO316 LEU317 ALA318 GLY319 LEU320 VAL321 ASP322 ALA323 LEU324 LEU325 GLU326 ARG327 LEU328 PRO329 PRO330 SER331 ASP332 ARG333 THR334 THR335 ARG336 GLY337 LYS338 GLU339 PRO340 HIS341 ALA342 TYR343 PRO344 THR345 GLY346 LEU347 GLN348 ALA349 ASP350 GLY351 GLU352 PRO353 ILE354 ALA355 PRO356 MET357 ASP358 ILE359 ALA360 ARG361 ALA362 VAL363 ASN364 ASP365 ARG366 VAL367 ARG368 ALA369 GLY370 GLN371 GLU372 PRO373 LEU374 LEU375 ILE376 ALA377 ALA378 ASP379 MET380 GLY381 ASP382 CYS383 LEU384 PHE385 THR386 ALA387 MET388 ASP389 MET390 ILE391 ASP392 ALA393 GLY394 LEU395 MET396 ALA397 PRO398 GLY399 TYR400 TYR401 ALA402 GLY403 MET404 GLY405 PHE406 GLY407 VAL408 PRO409 ALA410 GLY411 ILE412 GLY413 ALA414 GLN415 CYS416 VAL417 SER418 GLY419 GLY420 LYS421 ARG422 ILE423 LEU424 THR425 VAL426 VAL427 GLY428 ASP429 GLY430 ALA431 PHE432 GLN433 MET434 THR435 GLY436 TRP437 GLU438 LEU439 GLY440 ASN441 CYS442 ARG443 ARG444 LEU445 GLY446 ILE447 ASP448 PRO449 ILE450 VAL451 ILE452 LEU453 PHE454 ASN455 ASN456 ALA457 SER458 TRP459 GLU460 MET461 LEU462 ARG463 THR464 PHE465 GLN466 PRO467 GLU468 SER469 ALA470 PHE471 ASN472 ASP473 LEU474 ASP475 ASP476 TRP477 ARG478 PHE479 ALA480 ASP481 MET482 ALA483 ALA484 GLY485 MET486 GLY487 GLY488 ASP489 GLY490 VAL491 ARG492 VAL493 ARG494 THR495 ARG496 ALA497 GLU498 LEU499 LYS500 ALA501 ALA502 LEU503 ASP504 LYS505 ALA506 PHE507 ALA508 THR509 ARG510 GLY511 ARG512 PHE513 GLN514 LEU515 ILE516 GLU517 ALA518 MET519 ILE520 PRO521 ARG522 GLY523 VAL524 LEU525 SER526 ASP527 THR528 LEU529 ALA530 ARG531 PHE532 VAL533 GLN534 GLY535 GLN536 LYS537 ARG538

Ligands
Unit 3 TPP2002 GOL3002 MG4002 CL4003
Unit 4 TPP2001 GOL3001 GOL3003 MG4001 CL4004

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany