2NTF - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A QUORUM-QUENCHING ANTIBODY IN COMPLEX ACYL-L-HOMOSERINE LACTONE ANALOG
• Keywords: IMMUNOGLOBULIN, ANTIBODY, FAB, HAPTEN COMPLEX, QUORUM SENSIN HOMOSERINE LACTONE, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2NTF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MURINE ANTIBODY FAB RS2-1G9 LAMBDA LIGHT CHAIN	L	211	1606	0
2	Protein	MURINE ANTIBODY FAB RS2-1G9 IGG1 HEAVY CHAIN	H	222	1699	0
3	Protein	MURINE ANTIBODY FAB RS2-1G9 LAMBDA LIGHT CHAIN	A	211	1606	0
4	Protein	MURINE ANTIBODY FAB RS2-1G9 IGG1 HEAVY CHAIN	B	222	1699	0
5	Ligand	MURINE ANTIBODY FAB RS2-1G9 IGG1 HEAVY CHAIN	H	1	0	21
6	Ligand	MURINE ANTIBODY FAB RS2-1G9 IGG1 HEAVY CHAIN	B	1	0	21
total				868	6610	42

Proteins

Unit 1	GLN 1 ALA 2 VAL 3 VAL 4 THR 5 GLN 6 GLU 7 SER 8 ALA 9 LEU 11 THR 12 THR 13 SER 14 PRO 15 GLY 16 GLU 17 THR 18 VAL 19 THR 20 LEU 21 THR 22 CYS 23 ARG 24 SER 25 SER 26 THR 27 GLY 27A ALA 27B VAL 27C THR 28 THR 29 ARG 30 ASN 31 TYR 32 ALA 33 ASN 34 TRP 35 VAL 36 GLN 37 GLU 38 LYS 39 PRO 40 ASP 41 HIS 42 PHE 43 PHE 44 THR 45 GLY 46 LEU 47 ILE 48 GLY 49 ASP 50 THR 51 ASN 52 ASN 53 ARG 54 ALA 55 PRO 56 GLY 57 VAL 58 PRO 59 ALA 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LEU 66 ILE 67 GLY 68 HIS 69 LYS 70 ALA 71 ALA 72 LEU 73 THR 74 ILE 75 THR 76 GLY 77 ALA 78 GLN 79 THR 80 GLU 81 ASP 82 GLU 83 SER 84 VAL 85 TYR 86 PHE 87 CYS 88 ALA 89 LEU 90 TRP 91 TYR 92 SER 93 ASN 94 HIS 95 TRP 96 VAL 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 106A GLY 107 GLN 108 PRO 109 LYS 110 SER 111 SER 112 PRO 113 SER 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLU 126 THR 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 THR 135 ILE 136 THR 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 VAL 143 VAL 144 THR 145 VAL 146 ASP 147 TRP 148 LYS 149 VAL 150 ASP 151 GLY 152 THR 153 PRO 154 VAL 155 THR 156 GLN 157 GLY 158 MET 159 GLU 160 THR 161 THR 162 GLN 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 170 ASN 171 LYS 172 TYR 173 MET 174 ALA 175 SER 176 SER 177 TYR 178 LEU 179 THR 180 LEU 181 THR 182 ALA 183 GLY 184 ALA 185 TRP 186 GLU 187 ARG 188 HIS 189 SER 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 HIS 203 THR 204 VAL 205 GLU 206 LYS 207 SER 208 LEU 209 SER 210 ARG 211
Unit 2	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 SER 9 GLU 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 THR 31 TYR 32 TRP 33 ILE 34 HIS 35 TRP 36 VAL 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 THR 50 ILE 51 TYR 52 PRO 52A GLY 53 SER 54 ASP 55 ASN 56 THR 57 TYR 58 TYR 59 ASP 60 GLU 61 LYS 62 PHE 63 LYS 64 ASN 65 LYS 66 ALA 67 THR 68 LEU 69 THR 70 VAL 71 ASP 72 THR 73 SER 74 SER 75 SER 76 THR 77 ALA 78 PHE 79 MET 80 GLN 81 LEU 82 SER 82A SER 82B LEU 82C THR 83 SER 84 GLU 85 ASP 86 SER 87 ALA 88 VAL 89 TYR 90 PHE 91 CYS 92 THR 93 ARG 94 GLY 95 SER 96 LEU 97 TYR 98 TYR 99 ASN 100 ASN 100A TYR 100B GLY 100C TRP 100D PHE 100E GLY 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 ALA 113 ALA 114 LYS 115 THR 116 THR 117 PRO 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 GLY 127 SER 128 ASN 129 ALA 130 ALA 133 SER 134 GLN 135 SER 136 MET 137 VAL 138 THR 139 LEU 140 GLY 141 CYS 142 LEU 143 VAL 144 LYS 145 GLY 146 TYR 147 PHE 148 PRO 149 GLU 150 PRO 151 VAL 152 THR 153 VAL 154 THR 156 TRP 157 ASN 162 SER 163 GLY 164 SER 165 LEU 166 SER 167 SER 169 GLY 170 VAL 171 HIS 172 THR 173 PHE 174 PRO 175 ALA 176 VAL 177 LEU 180 GLN 181 SER 182 ASP 183 LEU 184 TYR 185 THR 186 LEU 187 THR 188 SER 189 SER 190 VAL 191 THR 192 VAL 193 PRO 194 SER 195 SER 196 THR 198 TRP 199 PRO 200 SER 202 GLN 203 THR 204 VAL 205 THR 206 CYS 208 ASN 209 VAL 210 ALA 211 HIS 212 PRO 213 ALA 214 SER 215 SER 216 THR 217 LYS 218 VAL 219 ASP 220 LYS 221 LYS 222 ILE 223 VAL 226 PRO 227 ARG 228
Unit 3	GLN 1 ALA 2 VAL 3 VAL 4 THR 5 GLN 6 GLU 7 SER 8 ALA 9 LEU 11 THR 12 THR 13 SER 14 PRO 15 GLY 16 GLU 17 THR 18 VAL 19 THR 20 LEU 21 THR 22 CYS 23 ARG 24 SER 25 SER 26 THR 27 GLY 27A ALA 27B VAL 27C THR 28 THR 29 ARG 30 ASN 31 TYR 32 ALA 33 ASN 34 TRP 35 VAL 36 GLN 37 GLU 38 LYS 39 PRO 40 ASP 41 HIS 42 PHE 43 PHE 44 THR 45 GLY 46 LEU 47 ILE 48 GLY 49 ASP 50 THR 51 ASN 52 ASN 53 ARG 54 ALA 55 PRO 56 GLY 57 VAL 58 PRO 59 ALA 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LEU 66 ILE 67 GLY 68 HIS 69 LYS 70 ALA 71 ALA 72 LEU 73 THR 74 ILE 75 THR 76 GLY 77 ALA 78 GLN 79 THR 80 GLU 81 ASP 82 GLU 83 SER 84 VAL 85 TYR 86 PHE 87 CYS 88 ALA 89 LEU 90 TRP 91 TYR 92 SER 93 ASN 94 HIS 95 TRP 96 VAL 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 106A GLY 107 GLN 108 PRO 109 LYS 110 SER 111 SER 112 PRO 113 SER 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLU 126 THR 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 THR 135 ILE 136 THR 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 VAL 143 VAL 144 THR 145 VAL 146 ASP 147 TRP 148 LYS 149 VAL 150 ASP 151 GLY 152 THR 153 PRO 154 VAL 155 THR 156 GLN 157 GLY 158 MET 159 GLU 160 THR 161 THR 162 GLN 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 170 ASN 171 LYS 172 TYR 173 MET 174 ALA 175 SER 176 SER 177 TYR 178 LEU 179 THR 180 LEU 181 THR 182 ALA 183 GLY 184 ALA 185 TRP 186 GLU 187 ARG 188 HIS 189 SER 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 HIS 203 THR 204 VAL 205 GLU 206 LYS 207 SER 208 LEU 209 SER 210 ARG 211
Unit 4	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 SER 9 GLU 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 THR 31 TYR 32 TRP 33 ILE 34 HIS 35 TRP 36 VAL 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 THR 50 ILE 51 TYR 52 PRO 52A GLY 53 SER 54 ASP 55 ASN 56 THR 57 TYR 58 TYR 59 ASP 60 GLU 61 LYS 62 PHE 63 LYS 64 ASN 65 LYS 66 ALA 67 THR 68 LEU 69 THR 70 VAL 71 ASP 72 THR 73 SER 74 SER 75 SER 76 THR 77 ALA 78 PHE 79 MET 80 GLN 81 LEU 82 SER 82A SER 82B LEU 82C THR 83 SER 84 GLU 85 ASP 86 SER 87 ALA 88 VAL 89 TYR 90 PHE 91 CYS 92 THR 93 ARG 94 GLY 95 SER 96 LEU 97 TYR 98 TYR 99 ASN 100 ASN 100A TYR 100B GLY 100C TRP 100D PHE 100E GLY 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 ALA 113 ALA 114 LYS 115 THR 116 THR 117 PRO 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 GLY 127 SER 128 ASN 129 ALA 130 ALA 133 SER 134 GLN 135 SER 136 MET 137 VAL 138 THR 139 LEU 140 GLY 141 CYS 142 LEU 143 VAL 144 LYS 145 GLY 146 TYR 147 PHE 148 PRO 149 GLU 150 PRO 151 VAL 152 THR 153 VAL 154 THR 156 TRP 157 ASN 162 SER 163 GLY 164 SER 165 LEU 166 SER 167 SER 169 GLY 170 VAL 171 HIS 172 THR 173 PHE 174 PRO 175 ALA 176 VAL 177 LEU 180 GLN 181 SER 182 ASP 183 LEU 184 TYR 185 THR 186 LEU 187 THR 188 SER 189 SER 190 VAL 191 THR 192 VAL 193 PRO 194 SER 195 SER 196 THR 198 TRP 199 PRO 200 SER 202 GLN 203 THR 204 VAL 205 THR 206 CYS 208 ASN 209 VAL 210 ALA 211 HIS 212 PRO 213 ALA 214 SER 215 SER 216 THR 217 LYS 218 VAL 219 ASP 220 LYS 221 LYS 222 ILE 223 VAL 226 PRO 227 ARG 228

Ligands

Unit 5	OHM 1001
Unit 6	OHM 1002