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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA
Keywords PSEUDOURIDINE SYNTHASE, ANTICODON STEM LOOP, TRNA, MULTISITE SPECIFICITY, ISOMERASE/RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    F 56 1196 0
2  Protein   TRNA PSEUDOURIDINE SYNTHASE A  A 259 1961 0
3  Ligand   LEUCYL TRNA  F 2 0 2
total       317 3157 2

Proteins
Unit 2 PRO7 PRO8 VAL9 TYR10 LYS11 ILE12 ALA13 LEU14 GLY15 ILE16 GLU17 TYR18 ASP19 GLY20 SER21 LYS22 TYR23 TYR24 GLY25 TRP26 GLN27 ARG28 GLN29 ASN30 GLU31 VAL32 ARG33 SER34 VAL35 GLN36 GLU37 LYS38 LEU39 GLU40 LYS41 ALA42 LEU43 SER44 GLN45 VAL46 ALA47 ASN48 GLU49 PRO50 ILE51 THR52 VAL53 PHE54 CYS55 ALA56 GLY57 ARG58 THR59 ASP60 ALA61 GLY62 VAL63 HIS64 GLY65 THR66 GLY67 GLN68 VAL69 VAL70 HIS71 PHE72 GLU73 THR74 THR75 ALA76 LEU77 ARG78 LYS79 ASP80 ALA81 ALA82 TRP83 THR84 LEU85 GLY86 VAL87 ASN88 ALA89 ASN90 LEU91 PRO92 GLY93 ASP94 ILE95 ALA96 VAL97 ARG98 TRP99 VAL100 LYS101 THR102 VAL103 PRO104 ASP105 ASP106 PHE107 HIS108 ALA109 ARG110 PHE111 SER112 ALA113 THR114 ALA115 ARG116 ARG117 TYR118 ARG119 TYR120 ILE121 ILE122 TYR123 ASN124 HIS125 ARG126 LEU127 ARG128 PRO129 ALA130 VAL131 LEU132 SER133 LYS134 GLY135 VAL136 THR137 HIS138 PHE139 TYR140 GLU141 PRO142 LEU143 ASP144 ALA145 GLU146 ARG147 MET148 HIS149 ARG150 ALA151 ALA152 GLN153 CYS154 LEU155 LEU156 GLY157 GLU158 ASN159 ASP160 PHE161 THR162 SER163 PHE164 ARG165 ALA166 VAL167 THR173 PRO174 TRP175 ARG176 ASN177 VAL178 MET179 HIS180 ILE181 ASN182 VAL183 THR184 ARG185 HIS186 GLY187 PRO188 TYR189 VAL190 VAL191 VAL192 ASP193 ILE194 LYS195 ALA196 ASN197 ALA198 PHE199 VAL200 HIS201 HIS202 MET203 VAL204 ARG205 ASN206 ILE207 VAL208 GLY209 SER210 LEU211 MET212 GLU213 VAL214 GLY215 ALA216 HIS217 ASN218 GLN219 PRO220 GLU221 SER222 TRP223 ILE224 ALA225 GLU226 LEU227 LEU228 ALA229 ALA230 LYS231 ASP232 ARG233 THR234 LEU235 ALA236 ALA237 ALA238 THR239 ALA240 LYS241 ALA242 GLU243 GLY244 LEU245 TYR246 LEU247 VAL248 ALA249 VAL250 ASP251 TYR252 PRO253 ASP254 ARG255 TYR256 ASP257 LEU258 PRO259 LYS260 PRO261 PRO262 MET263 GLY264 PRO265 LEU266 PHE267 LEU268 ALA269 ASP270

Nucleic acids
Unit 1 A5 G6 G7 U8 G9 G10 U11 G12 G13 A14 A15 U16 U17 G18 G19 U20 A20A G21 A22 C23 A24 C25 G26 C27 U28 A29 C30 C31 G39 G40 U41 A42 G43 U44 U48 A49 C50 G51 G52 G53 U54 U55 C56 A57 A58 G59 U60 C61 C62 C63 G64 U65 C66 C67 U68 C69

Ligands
Unit 3 K77 K78

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany