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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE COMPLEX OF ANTIBODY AND THE ALLERGE
Keywords BLA G 2, FAB, HYDROLASE-IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2NR6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ASPARTIC PROTEASE BLA G 2  A 330 2541 7
2  Protein   ASPARTIC PROTEASE BLA G 2  B 330 2541 7
3  Protein   ANTIBODY LIGHT CHAIN  C 211 1641 0
4  Protein   ANTIBODY HEAVY CHAIN  D 213 1611 0
5  Protein   ANTIBODY LIGHT CHAIN  E 211 1641 0
6  Protein   ANTIBODY HEAVY CHAIN  F 213 1611 0
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand   ASPARTIC PROTEASE BLA G 2  A 2 0 15
10  Ligand   ASPARTIC PROTEASE BLA G 2  B 2 0 15
11 Water     110 0 110
total       1626 11586 210
Proteins
Unit 1 GLY-8 ALA-7 SER-6 ILE-5 VAL-4 PRO-3 LEU-2 TYR-1 LYS0 LEU1 VAL2 HIS3 VAL4 PHE5 ILE6 ASN7 THR8 GLN13 TYR14 ALA15 GLY16 ILE17 THR18 LYS19 ILE20 GLY21 ASN24 GLN25 ASN26 PHE27 LEU28 THR29 VAL30 PHE31 ASP32 SER33 THR34 SER35 CYS36 ASN37 VAL38 VAL39 VAL40 ALA41 SER42 GLN43 GLU44 CYS45 VAL46 GLY47 GLY48 ALA49 CYS50 VAL51 CYS51A PRO51B ASN52 LEU53 GLN54 LYS55 TYR56 GLU57 LYS58 LEU59 LYS60 PRO61 LYS65 TYR66 ILE67 SER68 ASP68A GLY69 ASN70 VAL71 GLN72 VAL73 LYS74 PHE75 PHE75A ASP76 THR77 GLY78 SER79 ALA80 VAL81 GLY82 ARG83 GLY84 ILE85 GLU86 ASP87 SER88 LEU89 THR90 ILE91 SER92 GLN93 LEU94 THR95 THR96 SER97 GLN98 GLN99 ASP100 ILE101 VAL102 LEU103 ALA104 ASP105 GLU106 LEU107 SER109 GLN110 GLU111 VAL112 CYS113 ILE114 LEU115 SER116 ALA117 ASP118 VAL119 VAL120 VAL121 GLY122 ILE123 ALA124 ALA125 PRO126 GLY126A CYS127 PRO128 ASN129 ALA130 LEU131 LYS132 GLY133 LYS134 THR135 VAL136 LEU137 GLU138 ASN139 PHE140 VAL141 GLU142 GLU143 ASN144 LEU145 ILE146 ALA148 PRO149 VAL150 PHE151 SER152 ILE153 HIS154 HIS155 ALA156 ARG157 PHE158 GLN159 ASP159A GLY159B GLU160 HIS161 PHE162 GLY163 GLU164 ILE165 ILE166 PHE167 GLY168 GLY169 SER170 ASP171 TRP172 LYS173 TYR174 VAL175 ASP176 GLY177 GLU178 PHE179 THR180 TYR181 VAL182 PRO183 LEU184 VAL185 GLY186 ASP187 ASP188 SER189 TRP190 LYS191 PHE192 ARG193 LEU194 ASP195 GLY196 VAL197 LYS198 ILE199 GLY200 ASP201 THR202 THR203 VAL204 ALA205 PRO206 ALA207 GLY208 THR210 GLN211 ALA212 ILE213 ILE214 ASP215 THR216 SER217 LYS218 ALA219 ILE220 ILE221 VAL222 GLY223 PRO224 LYS225 ALA226 TYR227 VAL228 ASN229 PRO230 ILE231 ASN232 GLU233 ALA234 ILE235 GLY236 CYS237 VAL238 VAL239 GLU240 LYS241 THR242 THR242A THR242B ARG242C ARG243 ILE244 CYS245 LYS246 LEU247 ASP248 CYS249 SER250 LYS251 ILE252 PRO253 SER254 LEU255 PRO256 ASP257 VAL258 THR259 PHE260 VAL261 ILE262 ASN263 GLY264 ARG265 ASN266 PHE267 ASN268 ILE269 SER270 SER271 GLN272 TYR273 TYR274 ILE275 GLN276 GLN277 ASN278 GLY279 ASN280 LEU281 CYS282 TYR283 SER284 GLY285 PHE286 GLN287 PRO288 CSX289 GLY290 HIS291 SER292 ASP297 HIS298 PHE299 PHE300 ILE301 GLY302 ASP303 PHE304 PHE305 VAL306 ASP307 HIS308 TYR309 TYR310 SER311 GLU312 PHE313 ASN314 TRP315 GLU316 ASN317 LYS318 THR319 MET320 GLY321 PHE322 GLY323 ARG324 SER325 VAL326 GLU327
Unit 2 GLY-8 ALA-7 SER-6 ILE-5 VAL-4 PRO-3 LEU-2 TYR-1 LYS0 LEU1 VAL2 HIS3 VAL4 PHE5 ILE6 ASN7 THR8 GLN13 TYR14 ALA15 GLY16 ILE17 THR18 LYS19 ILE20 GLY21 ASN24 GLN25 ASN26 PHE27 LEU28 THR29 VAL30 PHE31 ASP32 SER33 THR34 SER35 CYS36 ASN37 VAL38 VAL39 VAL40 ALA41 SER42 GLN43 GLU44 CYS45 VAL46 GLY47 GLY48 ALA49 CYS50 VAL51 CYS51A PRO51B ASN52 LEU53 GLN54 LYS55 TYR56 GLU57 LYS58 LEU59 LYS60 PRO61 LYS65 TYR66 ILE67 SER68 ASP68A GLY69 ASN70 VAL71 GLN72 VAL73 LYS74 PHE75 PHE75A ASP76 THR77 GLY78 SER79 ALA80 VAL81 GLY82 ARG83 GLY84 ILE85 GLU86 ASP87 SER88 LEU89 THR90 ILE91 SER92 GLN93 LEU94 THR95 THR96 SER97 GLN98 GLN99 ASP100 ILE101 VAL102 LEU103 ALA104 ASP105 GLU106 LEU107 SER109 GLN110 GLU111 VAL112 CYS113 ILE114 LEU115 SER116 ALA117 ASP118 VAL119 VAL120 VAL121 GLY122 ILE123 ALA124 ALA125 PRO126 GLY126A CYS127 PRO128 ASN129 ALA130 LEU131 LYS132 GLY133 LYS134 THR135 VAL136 LEU137 GLU138 ASN139 PHE140 VAL141 GLU142 GLU143 ASN144 LEU145 ILE146 ALA148 PRO149 VAL150 PHE151 SER152 ILE153 HIS154 HIS155 ALA156 ARG157 PHE158 GLN159 ASP159A GLY159B GLU160 HIS161 PHE162 GLY163 GLU164 ILE165 ILE166 PHE167 GLY168 GLY169 SER170 ASP171 TRP172 LYS173 TYR174 VAL175 ASP176 GLY177 GLU178 PHE179 THR180 TYR181 VAL182 PRO183 LEU184 VAL185 GLY186 ASP187 ASP188 SER189 TRP190 LYS191 PHE192 ARG193 LEU194 ASP195 GLY196 VAL197 LYS198 ILE199 GLY200 ASP201 THR202 THR203 VAL204 ALA205 PRO206 ALA207 GLY208 THR210 GLN211 ALA212 ILE213 ILE214 ASP215 THR216 SER217 LYS218 ALA219 ILE220 ILE221 VAL222 GLY223 PRO224 LYS225 ALA226 TYR227 VAL228 ASN229 PRO230 ILE231 ASN232 GLU233 ALA234 ILE235 GLY236 CYS237 VAL238 VAL239 GLU240 LYS241 THR242 THR242A THR242B ARG242C ARG243 ILE244 CYS245 LYS246 LEU247 ASP248 CYS249 SER250 LYS251 ILE252 PRO253 SER254 LEU255 PRO256 ASP257 VAL258 THR259 PHE260 VAL261 ILE262 ASN263 GLY264 ARG265 ASN266 PHE267 ASN268 ILE269 SER270 SER271 GLN272 TYR273 TYR274 ILE275 GLN276 GLN277 ASN278 GLY279 ASN280 LEU281 CYS282 TYR283 SER284 GLY285 PHE286 GLN287 PRO288 CSX289 GLY290 HIS291 SER292 ASP297 HIS298 PHE299 PHE300 ILE301 GLY302 ASP303 PHE304 PHE305 VAL306 ASP307 HIS308 TYR309 TYR310 SER311 GLU312 PHE313 ASN314 TRP315 GLU316 ASN317 LYS318 THR319 MET320 GLY321 PHE322 GLY323 ARG324 SER325 VAL326 GLU327
Unit 3 ASP1 ILE2 VAL3 MET4 THR5 GLN6 SER7 HIS8 LYS9 PHE10 MET11 SER12 THR13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 SER20 ILE21 THR22 CYS23 LYS24 ALA25 SER26 GLN27 ILE28 VAL29 SER30 THR31 ALA32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 ALA51 SER52 TYR53 ARG54 TYR55 THR56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 THR63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 PHE73 THR74 ILE75 SER76 SER77 VAL78 GLN79 ALA80 GLU81 ASP82 LEU83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 HIS91 TYR92 ASN93 SER94 PRO95 GLN96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 4 GLU1 ILE2 GLN3 LEU4 GLN5 GLN6 SER7 GLY8 ALA9 GLU10 LEU11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 THR23 ALA24 SER25 GLY26 PHE27 ASN28 ILE29 LYS30 ASP31 THR32 TYR33 ILE34 HIS35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 GLU42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ARG50 ILE51 ASP52 PRO53 ALA54 ASN55 GLY56 ASN57 THR58 ARG59 TYR60 GLY61 PRO62 LYS63 PHE64 LEU65 GLY66 LYS67 ALA68 THR69 ILE70 THR71 ALA72 ASP73 THR74 SER75 SER76 ASN77 THR78 ALA79 TYR80 LEU81 HIS82 LEU83 ASN84 SER85 LEU86 THR87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 PHE95 CYS96 ALA97 ARG98 TRP99 VAL100 ARG101 GLN102 MET103 ASP104 TYR105 TRP106 GLY107 GLN108 GLY109 THR110 SER111 VAL112 THR113 VAL114 SER115 SER116 ALA117 LYS118 THR119 THR120 PRO121 PRO122 SER123 VAL124 TYR125 PRO126 LEU127 ALA128 PRO129 GLY130 SER131 ALA132 ALA133 GLN134 THR135 ASN136 SER137 MET138 VAL139 THR140 LEU141 GLY142 CYS143 LEU144 VAL145 LYS146 GLY147 TYR148 PHE149 PRO150 GLU151 PRO152 VAL153 THR154 VAL155 THR156 TRP157 ASN158 SER159 GLY160 SER161 LEU162 SER163 SER164 GLY165 VAL166 HIS167 THR168 PHE169 PRO170 ALA171 VAL172 LEU173 GLN174 SER175 ASP176 LEU177 TYR178 THR179 LEU180 SER181 SER182 SER183 VAL184 THR185 VAL186 PRO187 SER188 SER189 THR190 TRP191 PRO192 SER193 GLU194 THR195 VAL196 THR197 CYS198 ASN199 VAL200 ALA201 HIS202 PRO203 ALA204 SER205 SER206 THR207 LYS208 VAL209 ASP210 LYS211 LYS212 ILE213
Unit 5 ASP1 ILE2 VAL3 MET4 THR5 GLN6 SER7 HIS8 LYS9 PHE10 MET11 SER12 THR13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 SER20 ILE21 THR22 CYS23 LYS24 ALA25 SER26 GLN27 ILE28 VAL29 SER30 THR31 ALA32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 ALA51 SER52 TYR53 ARG54 TYR55 THR56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 THR63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 PHE73 THR74 ILE75 SER76 SER77 VAL78 GLN79 ALA80 GLU81 ASP82 LEU83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 HIS91 TYR92 ASN93 SER94 PRO95 GLN96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 6 GLU1 ILE2 GLN3 LEU4 GLN5 GLN6 SER7 GLY8 ALA9 GLU10 LEU11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 THR23 ALA24 SER25 GLY26 PHE27 ASN28 ILE29 LYS30 ASP31 THR32 TYR33 ILE34 HIS35 TRP36 VAL37 LYS38 GLN39 ARG40 PRO41 GLU42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ARG50 ILE51 ASP52 PRO53 ALA54 ASN55 GLY56 ASN57 THR58 ARG59 TYR60 GLY61 PRO62 LYS63 PHE64 LEU65 GLY66 LYS67 ALA68 THR69 ILE70 THR71 ALA72 ASP73 THR74 SER75 SER76 ASN77 THR78 ALA79 TYR80 LEU81 HIS82 LEU83 ASN84 SER85 LEU86 THR87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 PHE95 CYS96 ALA97 ARG98 TRP99 VAL100 ARG101 GLN102 MET103 ASP104 TYR105 TRP106 GLY107 GLN108 GLY109 THR110 SER111 VAL112 THR113 VAL114 SER115 SER116 ALA117 LYS118 THR119 THR120 PRO121 PRO122 SER123 VAL124 TYR125 PRO126 LEU127 ALA128 PRO129 GLY130 SER131 ALA132 ALA133 GLN134 THR135 ASN136 SER137 MET138 VAL139 THR140 LEU141 GLY142 CYS143 LEU144 VAL145 LYS146 GLY147 TYR148 PHE149 PRO150 GLU151 PRO152 VAL153 THR154 VAL155 THR156 TRP157 ASN158 SER159 GLY160 SER161 LEU162 SER163 SER164 GLY165 VAL166 HIS167 THR168 PHE169 PRO170 ALA171 VAL172 LEU173 GLN174 SER175 ASP176 LEU177 TYR178 THR179 LEU180 SER181 SER182 SER183 VAL184 THR185 VAL186 PRO187 SER188 SER189 THR190 TRP191 PRO192 SER193 GLU194 THR195 VAL196 THR197 CYS198 ASN199 VAL200 ALA201 HIS202 PRO203 ALA204 SER205 SER206 THR207 LYS208 VAL209 ASP210 LYS211 LYS212 ILE213
Ligands
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG601 ZN602
Unit 10 NAG601 ZN602
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany