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Sequence, Chains, Asymmetric and Biological Units

Title BREAKAGE-REUNION DOMAIN OF S.PNEUMONIAE TOPO IV: CRYSTAL STR A GRAM-POSITIVE QUINOLONE TARGET
Keywords PROTEIN, PARC, TOPO IV, GRAM-POSITIVE BACTERIA, QUINOLONE TA BINDING, DNA CLEAVAGE, ISOMERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2NOV     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA TOPOISOMERASE 4 SUBUNIT A  A 440 3368 0
2  Protein   DNA TOPOISOMERASE 4 SUBUNIT A  B 451 3458 0
3  Protein   DNA TOPOISOMERASE 4 SUBUNIT A  C 451 3456 0
4  Protein   DNA TOPOISOMERASE 4 SUBUNIT A  D 440 3338 0
5 Water     24 0 24
total       1806 13620 24

Proteins
Unit 1 ALA29 LEU30 PRO31 ASP32 ILE33 ARG34 ASP35 GLY36 LEU37 LYS38 PRO39 VAL40 GLN41 ARG42 ARG43 ILE44 LEU45 TYR46 SER47 MET48 ASN49 LYS50 ASP51 SER52 ASN53 THR54 PHE55 ASP56 LYS57 SER58 TYR59 ARG60 LYS61 SER62 ALA63 LYS64 SER65 VAL66 GLY67 ASN68 ILE69 MET70 GLY71 ASN72 PHE73 HIS74 PRO75 HIS76 GLY77 ASP78 SER79 SER80 ILE81 TYR82 ASP83 ALA84 MET85 VAL86 ARG87 MET88 SER89 GLN90 ASN91 TRP92 LYS93 ASN94 ARG95 GLU96 ILE97 LEU98 VAL99 GLU100 MET101 HIS102 GLY103 ASN104 ASN105 GLY106 SER107 MET108 ASP109 GLY110 ASP111 PRO112 PRO113 ALA114 ALA115 MET116 ARG117 TYR118 THR119 GLU120 ALA121 ARG122 LEU123 SER124 GLU125 ILE126 ALA127 GLY128 TYR129 LEU130 LEU131 GLN132 ASP133 ILE134 GLU135 LYS136 LYS137 THR138 VAL139 PRO140 PHE141 ALA142 TRP143 ASN144 PHE145 ASP146 ASP147 THR148 GLU149 LYS150 GLU151 PRO152 THR153 VAL154 LEU155 PRO156 ALA157 ALA158 PHE159 PRO160 ASN161 LEU162 LEU163 VAL164 ASN165 GLY166 SER167 THR168 GLY169 ILE170 SER171 GLY173 TYR174 ALA175 THR176 ASP177 ILE178 PRO179 PRO180 HIS181 ASN182 LEU183 ALA184 GLU185 VAL186 ILE187 ASP188 ALA189 ALA190 VAL191 TYR192 MET193 ILE194 ASP195 HIS196 PRO197 THR198 ALA199 LYS200 ILE201 ASP202 LYS203 LEU204 MET205 GLU206 PHE207 LEU208 PRO209 GLY210 PRO211 ASP212 PHE213 PRO214 THR215 GLY216 ALA217 ILE218 ILE219 GLN220 GLY221 ARG222 ASP223 GLU224 ILE225 LYS226 LYS227 ALA228 TYR229 GLU230 THR231 GLY232 LYS233 GLY234 ARG235 VAL236 VAL237 VAL238 ARG239 SER240 LYS241 THR242 GLU243 ILE244 GLU245 LYS246 LEU247 LYS248 GLY249 GLY250 LYS251 GLU252 GLN253 ILE254 VAL255 ILE256 THR257 GLU258 ILE259 PRO260 TYR261 GLU262 ILE263 ASN264 LYS265 ALA266 ASN267 LEU268 VAL269 LYS270 LYS271 ILE272 ASP273 ASP274 VAL275 ARG276 VAL277 ASN278 ASN279 LYS280 VAL281 ALA282 GLU286 VAL287 ARG288 ASP289 GLU290 LEU296 ARG297 ILE298 ALA299 ILE300 ASP305 ALA306 ASN307 THR308 GLU309 LEU310 VAL311 LEU312 ASN313 TYR314 LEU315 PHE316 LYS317 TYR318 THR319 ASP320 LEU321 GLN322 ILE323 ASN324 TYR325 ASN326 PHE327 ASN328 MET329 VAL330 ALA331 ILE332 ASP333 ASN334 PHE335 THR336 PRO337 ARG338 GLN339 VAL340 GLY341 ILE342 VAL343 PRO344 ILE345 LEU346 SER347 SER348 TYR349 ILE350 ALA351 HIS352 ARG353 ARG354 GLU355 VAL356 ILE357 LEU358 ALA359 ARG360 SER361 ARG362 PHE363 ASP364 LYS365 GLU366 LYS367 ALA368 GLU369 LYS370 ARG371 LEU372 HIS373 ILE374 VAL375 GLU376 GLY377 LEU378 ILE379 ARG380 VAL381 ILE382 SER383 ILE384 LEU385 ASP386 GLU387 VAL388 ILE389 ALA390 LEU391 ILE392 ARG393 ALA394 SER395 GLU396 ASN397 LYS398 ALA399 ASP400 ALA401 LYS402 GLU403 ASN404 LEU405 LYS406 VAL407 TYR409 ASP410 PHE411 THR412 GLU413 GLU414 GLN415 ALA416 GLU417 ALA418 ILE419 VAL420 THR421 LEU422 GLN423 LEU424 TYR425 ARG426 LEU427 THR428 ASN429 THR430 ASP431 VAL432 VAL433 VAL434 LEU435 GLN436 GLU437 GLU438 GLU439 ALA440 GLU441 LEU442 ARG443 GLU444 LYS445 ILE446 ALA447 MET448 LEU449 ALA450 ALA451 ILE452 ILE453 GLY454 ASP455 GLU456 ARG457 THR458 MET459 TYR460 ASN461 LEU462 MET463 LYS464 LYS465 GLU466 LEU467 ARG468 GLU469 VAL470 LYS471 LYS472 LYS473 PHE474 ALA475 THR476 PRO477 ARG478 LEU479 SER480 SER481 LEU482
Unit 2 ALA29 LEU30 PRO31 ASP32 ILE33 ARG34 ASP35 GLY36 LEU37 LYS38 PRO39 VAL40 GLN41 ARG42 ARG43 ILE44 LEU45 TYR46 SER47 MET48 ASN49 LYS50 ASP51 SER52 ASN53 THR54 PHE55 ASP56 LYS57 SER58 TYR59 ARG60 LYS61 SER62 ALA63 LYS64 SER65 VAL66 GLY67 ASN68 ILE69 MET70 GLY71 ASN72 PHE73 HIS74 PRO75 HIS76 GLY77 ASP78 SER79 SER80 ILE81 TYR82 ASP83 ALA84 MET85 VAL86 ARG87 MET88 SER89 GLN90 ASN91 TRP92 LYS93 ASN94 ARG95 GLU96 ILE97 LEU98 VAL99 GLU100 MET101 HIS102 GLY103 ASN104 ASN105 GLY106 SER107 MET108 ASP109 GLY110 ASP111 PRO112 PRO113 ALA114 ALA115 MET116 ARG117 TYR118 THR119 GLU120 ALA121 ARG122 LEU123 SER124 GLU125 ILE126 ALA127 GLY128 TYR129 LEU130 LEU131 GLN132 ASP133 ILE134 GLU135 LYS136 LYS137 THR138 VAL139 PRO140 PHE141 ALA142 TRP143 ASN144 PHE145 ASP146 ASP147 THR148 GLU149 LYS150 GLU151 PRO152 THR153 VAL154 LEU155 PRO156 ALA157 ALA158 PHE159 PRO160 ASN161 LEU162 LEU163 VAL164 ASN165 GLY166 SER167 THR168 GLY169 ILE170 SER171 GLY173 TYR174 ALA175 THR176 ASP177 ILE178 PRO179 PRO180 HIS181 ASN182 LEU183 ALA184 GLU185 VAL186 ILE187 ASP188 ALA189 ALA190 VAL191 TYR192 MET193 ILE194 ASP195 HIS196 PRO197 THR198 ALA199 LYS200 ILE201 ASP202 LYS203 LEU204 MET205 GLU206 PHE207 LEU208 PRO209 GLY210 PRO211 ASP212 PHE213 PRO214 THR215 GLY216 ALA217 ILE218 ILE219 GLN220 GLY221 ARG222 ASP223 GLU224 ILE225 LYS226 LYS227 ALA228 TYR229 GLU230 THR231 GLY232 LYS233 GLY234 ARG235 VAL236 VAL237 VAL238 ARG239 SER240 LYS241 THR242 GLU243 ILE244 GLU245 LYS246 LEU247 LYS248 GLY249 GLY250 LYS251 GLU252 GLN253 ILE254 VAL255 ILE256 THR257 GLU258 ILE259 PRO260 TYR261 GLU262 ILE263 ASN264 LYS265 ALA266 ASN267 LEU268 VAL269 LYS270 LYS271 ILE272 ASP273 ASP274 VAL275 ARG276 VAL277 ASN278 ASN279 LYS280 VAL281 ALA282 GLY283 ILE284 ALA285 GLU286 VAL287 ARG288 ASP289 GLU290 SER291 ASP292 ARG293 ASP294 GLY295 LEU296 ARG297 ILE298 ILE300 GLU301 LEU302 LYS303 LYS304 ASP305 ALA306 ASN307 THR308 GLU309 LEU310 VAL311 LEU312 ASN313 TYR314 LEU315 PHE316 LYS317 TYR318 THR319 ASP320 LEU321 GLN322 ILE323 ASN324 TYR325 ASN326 PHE327 ASN328 MET329 VAL330 ALA331 ILE332 ASP333 ASN334 PHE335 THR336 PRO337 ARG338 GLN339 VAL340 GLY341 ILE342 VAL343 PRO344 ILE345 LEU346 SER347 SER348 TYR349 ILE350 ALA351 HIS352 ARG353 ARG354 GLU355 VAL356 ILE357 LEU358 ALA359 ARG360 SER361 ARG362 PHE363 ASP364 LYS365 GLU366 LYS367 ALA368 GLU369 LYS370 ARG371 LEU372 HIS373 ILE374 VAL375 GLU376 GLY377 LEU378 ILE379 ARG380 VAL381 ILE382 SER383 ILE384 LEU385 ASP386 GLU387 VAL388 ILE389 ALA390 LEU391 ILE392 ARG393 ALA394 SER395 GLU396 ASN397 LYS398 ALA399 ASP400 ALA401 LYS402 GLU403 ASN404 LEU405 LYS406 VAL407 TYR409 ASP410 PHE411 THR412 GLU413 GLU414 GLN415 ALA416 GLU417 ALA418 ILE419 VAL420 THR421 LEU422 GLN423 LEU424 TYR425 ARG426 LEU427 THR428 ASN429 THR430 ASP431 VAL432 VAL433 VAL434 LEU435 GLN436 GLU437 GLU438 GLU439 ALA440 GLU441 LEU442 ARG443 GLU444 LYS445 ILE446 ALA447 MET448 LEU449 ALA450 ALA451 ILE452 ILE453 GLY454 ASP455 GLU456 ARG457 THR458 MET459 TYR460 ASN461 LEU462 MET463 LYS464 LYS465 GLU466 LEU467 ARG468 GLU469 VAL470 LYS471 LYS472 LYS473 PHE474 ALA475 THR476 PRO477 ARG478 LEU479 SER480 SER481 LEU482
Unit 3 ALA29 LEU30 PRO31 ASP32 ILE33 ARG34 ASP35 GLY36 LEU37 LYS38 PRO39 VAL40 GLN41 ARG42 ARG43 ILE44 LEU45 TYR46 SER47 MET48 ASN49 LYS50 ASP51 SER52 ASN53 THR54 PHE55 ASP56 LYS57 SER58 TYR59 ARG60 LYS61 SER62 ALA63 LYS64 SER65 VAL66 GLY67 ASN68 ILE69 MET70 GLY71 ASN72 PHE73 HIS74 PRO75 HIS76 GLY77 ASP78 SER79 SER80 ILE81 TYR82 ASP83 ALA84 MET85 VAL86 ARG87 MET88 SER89 GLN90 ASN91 TRP92 LYS93 ASN94 ARG95 GLU96 ILE97 LEU98 VAL99 GLU100 MET101 HIS102 GLY103 ASN104 ASN105 GLY106 SER107 MET108 ASP109 GLY110 ASP111 PRO112 PRO113 ALA114 ALA115 MET116 ARG117 TYR118 THR119 GLU120 ALA121 ARG122 LEU123 SER124 GLU125 ILE126 ALA127 GLY128 TYR129 LEU130 LEU131 GLN132 ASP133 ILE134 GLU135 LYS136 LYS137 THR138 VAL139 PRO140 PHE141 ALA142 TRP143 ASN144 PHE145 ASP146 ASP147 THR148 GLU149 LYS150 GLU151 PRO152 THR153 VAL154 LEU155 PRO156 ALA157 ALA158 PHE159 PRO160 ASN161 LEU162 LEU163 VAL164 ASN165 GLY166 SER167 THR168 GLY169 ILE170 SER171 ALA172 GLY173 TYR174 ALA175 THR176 ASP177 ILE178 PRO179 PRO180 HIS181 ASN182 LEU183 ALA184 GLU185 VAL186 ILE187 ASP188 ALA189 ALA190 VAL191 TYR192 MET193 ILE194 ASP195 HIS196 PRO197 THR198 ALA199 LYS200 ILE201 ASP202 LYS203 LEU204 MET205 GLU206 PHE207 LEU208 PRO209 GLY210 PRO211 ASP212 PHE213 PRO214 THR215 GLY216 ALA217 ILE218 ILE219 GLN220 GLY221 ARG222 ASP223 GLU224 ILE225 LYS226 LYS227 ALA228 TYR229 GLU230 THR231 GLY232 LYS233 GLY234 ARG235 VAL236 VAL237 VAL238 ARG239 SER240 LYS241 THR242 GLU243 ILE244 GLU245 LYS246 LEU247 LYS248 GLY249 GLY250 LYS251 GLU252 GLN253 ILE254 VAL255 ILE256 THR257 GLU258 ILE259 PRO260 TYR261 GLU262 ILE263 ASN264 LYS265 ALA266 ASN267 LEU268 VAL269 LYS270 LYS271 ILE272 ASP273 ASP274 VAL275 ARG276 VAL277 ASN278 ASN279 LYS280 VAL281 ALA282 GLY283 ILE284 ALA285 GLU286 VAL287 ARG288 ASP289 GLU290 SER291 ASP292 ARG293 ASP294 GLY295 LEU296 ARG297 ILE298 ALA299 ILE300 GLU301 LEU302 LYS303 LYS304 ASP305 ASN307 THR308 GLU309 LEU310 VAL311 LEU312 ASN313 TYR314 LEU315 PHE316 LYS317 TYR318 THR319 ASP320 LEU321 GLN322 ILE323 ASN324 TYR325 ASN326 PHE327 ASN328 MET329 VAL330 ALA331 ILE332 ASP333 ASN334 PHE335 THR336 PRO337 ARG338 GLN339 VAL340 GLY341 ILE342 VAL343 PRO344 ILE345 LEU346 SER347 SER348 TYR349 ILE350 ALA351 HIS352 ARG353 ARG354 GLU355 VAL356 ILE357 LEU358 ALA359 ARG360 SER361 ARG362 PHE363 ASP364 LYS365 GLU366 LYS367 ALA368 GLU369 LYS370 ARG371 LEU372 HIS373 ILE374 VAL375 GLU376 GLY377 LEU378 ILE379 ARG380 VAL381 ILE382 SER383 ILE384 LEU385 ASP386 GLU387 VAL388 ILE389 ALA390 LEU391 ILE392 ARG393 ALA394 SER395 GLU396 ASN397 LYS398 ALA399 ASP400 ALA401 LYS402 GLU403 ASN404 LEU405 LYS406 VAL407 ASP410 PHE411 THR412 GLU413 GLU414 GLN415 ALA416 GLU417 ALA418 ILE419 VAL420 THR421 LEU422 GLN423 LEU424 TYR425 ARG426 LEU427 THR428 ASN429 THR430 ASP431 VAL432 VAL433 VAL434 LEU435 GLN436 GLU437 GLU438 GLU439 ALA440 GLU441 LEU442 ARG443 GLU444 LYS445 ILE446 ALA447 MET448 LEU449 ALA450 ALA451 ILE452 ILE453 GLY454 ASP455 GLU456 ARG457 THR458 MET459 TYR460 ASN461 LEU462 MET463 LYS464 LYS465 GLU466 LEU467 ARG468 GLU469 VAL470 LYS471 LYS472 LYS473 PHE474 ALA475 THR476 PRO477 ARG478 LEU479 SER480 SER481 LEU482
Unit 4 ALA29 LEU30 PRO31 ASP32 ILE33 ARG34 ASP35 GLY36 LEU37 LYS38 PRO39 VAL40 GLN41 ARG42 ARG43 ILE44 LEU45 TYR46 SER47 MET48 ASN49 LYS50 ASP51 SER52 ASN53 THR54 PHE55 ASP56 LYS57 SER58 TYR59 ARG60 LYS61 SER62 ALA63 LYS64 SER65 VAL66 GLY67 ASN68 ILE69 MET70 GLY71 ASN72 PHE73 HIS74 PRO75 HIS76 GLY77 ASP78 SER79 SER80 ILE81 TYR82 ASP83 ALA84 MET85 VAL86 ARG87 MET88 SER89 GLN90 ASN91 TRP92 LYS93 ASN94 ARG95 GLU96 ILE97 LEU98 VAL99 GLU100 MET101 HIS102 GLY103 ASN104 ASN105 GLY106 SER107 MET108 ASP109 ASP111 PRO112 PRO113 ALA114 ALA115 MET116 ARG117 TYR118 THR119 GLU120 ALA121 ARG122 LEU123 SER124 GLU125 ILE126 ALA127 GLY128 TYR129 LEU130 LEU131 GLN132 ASP133 ILE134 GLU135 LYS136 LYS137 THR138 VAL139 PRO140 PHE141 ALA142 TRP143 ASN144 PHE145 ASP146 ASP147 THR148 GLU149 LYS150 GLU151 PRO152 THR153 VAL154 LEU155 PRO156 ALA157 ALA158 PHE159 PRO160 ASN161 LEU162 LEU163 VAL164 ASN165 GLY166 SER167 THR168 GLY169 ILE170 ALA175 THR176 ASP177 ILE178 PRO179 PRO180 HIS181 ASN182 LEU183 ALA184 GLU185 VAL186 ILE187 ASP188 ALA189 ALA190 VAL191 TYR192 MET193 ILE194 ASP195 HIS196 PRO197 THR198 ALA199 LYS200 ILE201 ASP202 LYS203 LEU204 MET205 GLU206 PHE207 LEU208 PRO209 GLY210 PRO211 ASP212 PHE213 PRO214 THR215 GLY216 ALA217 ILE218 ILE219 GLN220 GLY221 ARG222 ASP223 GLU224 ILE225 LYS226 LYS227 ALA228 TYR229 GLU230 THR231 GLY232 LYS233 GLY234 ARG235 VAL236 VAL237 VAL238 ARG239 SER240 LYS241 THR242 GLU243 ILE244 GLU245 LYS246 LEU247 LYS248 GLY249 GLY250 LYS251 GLU252 ILE254 VAL255 ILE256 THR257 GLU258 ILE259 PRO260 TYR261 GLU262 ILE263 ASN264 LYS265 ALA266 ASN267 LEU268 VAL269 LYS270 LYS271 ILE272 ASP273 ASP274 VAL275 ARG276 VAL277 ASN278 ASN279 LYS280 VAL281 ALA285 GLU286 VAL287 ARG288 ASP289 GLU290 SER291 ASP292 ARG293 ASP294 GLY295 LEU296 ARG297 ILE298 ALA299 ILE300 GLU301 LEU302 LYS303 LYS304 ASP305 ALA306 ASN307 THR308 GLU309 LEU310 VAL311 LEU312 ASN313 TYR314 LEU315 THR319 ASP320 LEU321 GLN322 ILE323 ASN324 TYR325 ASN326 PHE327 ASN328 MET329 VAL330 ALA331 ILE332 ASP333 ASN334 PHE335 THR336 PRO337 ARG338 GLN339 VAL340 GLY341 ILE342 VAL343 PRO344 ILE345 LEU346 SER347 SER348 TYR349 ILE350 ALA351 HIS352 ARG353 ARG354 GLU355 VAL356 ILE357 LEU358 ALA359 ARG360 SER361 ARG362 PHE363 ASP364 LYS365 GLU366 LYS367 ALA368 GLU369 LYS370 ARG371 LEU372 HIS373 ILE374 VAL375 GLU376 GLY377 LEU378 ILE379 ARG380 VAL381 ILE382 SER383 ILE384 LEU385 ASP386 GLU387 VAL388 ILE389 ALA390 LEU391 ILE392 ARG393 ALA394 SER395 GLU396 ASN397 LYS398 ALA399 ASP400 ALA401 LYS402 GLU403 ASN404 LEU405 LYS406 VAL407 ASP410 PHE411 THR412 GLU413 GLU414 GLN415 ALA416 GLU417 ALA418 ILE419 VAL420 THR421 LEU422 GLN423 LEU424 TYR425 ARG426 LEU427 THR428 ASN429 THR430 ASP431 VAL432 VAL433 VAL434 LEU435 GLN436 GLU437 GLU438 GLU439 ALA440 GLU441 LEU442 ARG443 GLU444 LYS445 ILE446 ALA447 MET448 LEU449 ALA450 ALA451 ILE452 ILE453 GLY454 ASP455 GLU456 ARG457 THR458 MET459 TYR460 ASN461 LEU462 MET463 LYS464 LYS465 GLU466 LEU467 ARG468 GLU469 VAL470 LYS471 LYS472 LYS473 PHE474 ALA475 THR476 PRO477 ARG478 LEU479 SER480 SER481 LEU482

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany