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Title | CRYSTAL STRUCTURE OF AN RNA DOMAIN FROM HEPATITIS C VIRUS. | |
Keywords | MG BINDING SITE, BENT RNA, RNA | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2NOK | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 24 | 505 | 0 | |
2 | RNA | B | 20 | 423 | 0 | |
3 | RNA | C | 24 | 505 | 0 | |
4 | RNA | D | 20 | 423 | 0 | |
5 | Ligand | 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*U *CP*AP*CP*GP*CP*C)-3' | A | 3 | 0 | 3 |
6 | Ligand | 5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*C *GP*G)-3' | B | 4 | 0 | 4 |
7 | Ligand | 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*U *CP*AP*CP*GP*CP*C)-3' | C | 4 | 0 | 4 |
8 | Ligand | 5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*C *GP*G)-3' | D | 2 | 0 | 2 |
total | 101 | 1856 | 13 |
Unit 1 | C47 G48 G49 A50 G51 G52 A53 A54 C55 U56 A57 C58 U59 G60 U61 C62 U63 U64 C65 A66 C67 G68 C69 C70 |
Unit 2 | G98 C99 G100 U101 G102 U103 C104 G105 U106 G107 C108 A109 G110 C111 C112 U113 C114 C115 G116 G117 |
Unit 3 | C47 G48 G49 A50 G51 G52 A53 A54 C55 U56 A57 C58 U59 G60 U61 C62 U63 U64 C65 A66 C67 G68 C69 C70 |
Unit 4 | G98 C99 G100 U101 G102 U103 C104 G105 U106 G107 C108 A109 G110 C111 C112 U113 C114 C115 G116 G117 |
Unit 5 | MN119 MG127 MN128 |
Unit 6 | MG122 MG124 MG129 MG130 |
Unit 7 | MN118 MN120 MN123 MG126 |
Unit 8 | MG121 MG125 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |