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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AN RNA DOMAIN FROM HEPATITIS C VIRUS.
Keywords MG BINDING SITE, BENT RNA, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 24 505 0
2  RNA    B 20 423 0
3  RNA    C 24 505 0
4  RNA    D 20 423 0
5  Ligand   5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*U *CP*AP*CP*GP*CP*C)-3'  A 3 0 3
6  Ligand   5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*C *GP*G)-3'  B 4 0 4
7  Ligand   5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*U *CP*AP*CP*GP*CP*C)-3'  C 4 0 4
8  Ligand   5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*C *GP*G)-3'  D 2 0 2
total       101 1856 13

Nucleic acids
Unit 1 C47 G48 G49 A50 G51 G52 A53 A54 C55 U56 A57 C58 U59 G60 U61 C62 U63 U64 C65 A66 C67 G68 C69 C70
Unit 2 G98 C99 G100 U101 G102 U103 C104 G105 U106 G107 C108 A109 G110 C111 C112 U113 C114 C115 G116 G117
Unit 3 C47 G48 G49 A50 G51 G52 A53 A54 C55 U56 A57 C58 U59 G60 U61 C62 U63 U64 C65 A66 C67 G68 C69 C70
Unit 4 G98 C99 G100 U101 G102 U103 C104 G105 U106 G107 C108 A109 G110 C111 C112 U113 C114 C115 G116 G117

Ligands
Unit 5 MN119 MG127 MN128
Unit 6 MG122 MG124 MG129 MG130
Unit 7 MN118 MN120 MN123 MG126
Unit 8 MG121 MG125

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany