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Sequence, Chains, Asymmetric and Biological Units

Title AN NMR/SAXS STRUCTURE OF THE PKI DOMAIN OF THE HONEYBEE DICI ISRAELI ACUTE PARALYSIS VIRUS (IAPV) IRES
Keywords RNA, IAPV, PSEUDOKNOT
Experiment NMR
Number of Models  10


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2N8V     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    X 70 2250 0
total       70 2250 0

Nucleic acids
Unit 1 G1 G2 A3 A4 C5 A6 G7 C8 U9 G10 U11 A12 C13 U14 G15 G16 G17 C18 A19 G20 U21 U22 A23 C24 A25 G26 C27 A28 G29 U30 C31 G32 U33 A34 U35 G36 G37 U38 A39 A40 C41 A42 C43 A44 U45 G46 C47 G48 G49 C50 G51 U52 U53 C54 C55 G56 A57 A58 A59 U60 A61 C62 C63 A64 U65 G66 C67 C68 U69 G70

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany