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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS OF THE NON-CODING RNA RSMZ ACTING AS PROTEI CONFORMER L OF RSMZ(1-72)/RSME(DIMER) 1TO3 COMPLEX
Keywords PROTEIN/RNA, NON-CODING RNA, TRANSLATION REPRESSOR PROTEIN, PSEUDOMONAS AERUGINOSA, MESSENGER RNA, PROTEIN SEQUESTRATIO CONFORMATIONS, RNASE E CLEAVE SITES, HOMO-DIMERIC PROTEINS, COOPERATIVITY, MULTIPLE PROTEIN BINDING SITES, TRANSLATION ACTIVATION, RIBOSOME BINDING SITE, LARGE SOLUTION STRUCTURE ELECTRON PARAMAGNETIC RESONANCE, PROTEIN SPONGE, RNP ASSEMB BINDING PROTEIN-RNA COMPLEX
Experiment NMR
Number of Models  20


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2MF0     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CARBON STORAGE REGULATOR HOMOLOG  A 59 920 0
2  Protein   CARBON STORAGE REGULATOR HOMOLOG  B 59 920 0
3  Protein   CARBON STORAGE REGULATOR HOMOLOG  C 59 920 0
4  Protein   CARBON STORAGE REGULATOR HOMOLOG  D 59 920 0
5  Protein   CARBON STORAGE REGULATOR HOMOLOG  E 59 920 0
6  Protein   CARBON STORAGE REGULATOR HOMOLOG  F 59 920 0
7  RNA    G 72 2332 0
total       426 7852 0

Proteins
Unit 1 MET1 LEU2 ILE3 LEU4 THR5 ARG6 LYS7 VAL8 GLY9 GLU10 SER11 ILE12 ASN13 ILE14 GLY15 ASP16 ASP17 ILE18 THR19 ILE20 THR21 ILE22 LEU23 GLY24 VAL25 SER26 GLY27 GLN28 GLN29 VAL30 ARG31 ILE32 GLY33 ILE34 ASN35 ALA36 PRO37 LYS38 ASP39 VAL40 ALA41 VAL42 HIS43 ARG44 GLU45 GLU46 ILE47 TYR48 GLN49 ARG50 ILE51 GLN52 ALA53 GLY54 LEU55 THR56 ALA57 PRO58 ASP59
Unit 2 MET1 LEU2 ILE3 LEU4 THR5 ARG6 LYS7 VAL8 GLY9 GLU10 SER11 ILE12 ASN13 ILE14 GLY15 ASP16 ASP17 ILE18 THR19 ILE20 THR21 ILE22 LEU23 GLY24 VAL25 SER26 GLY27 GLN28 GLN29 VAL30 ARG31 ILE32 GLY33 ILE34 ASN35 ALA36 PRO37 LYS38 ASP39 VAL40 ALA41 VAL42 HIS43 ARG44 GLU45 GLU46 ILE47 TYR48 GLN49 ARG50 ILE51 GLN52 ALA53 GLY54 LEU55 THR56 ALA57 PRO58 ASP59
Unit 3 MET1 LEU2 ILE3 LEU4 THR5 ARG6 LYS7 VAL8 GLY9 GLU10 SER11 ILE12 ASN13 ILE14 GLY15 ASP16 ASP17 ILE18 THR19 ILE20 THR21 ILE22 LEU23 GLY24 VAL25 SER26 GLY27 GLN28 GLN29 VAL30 ARG31 ILE32 GLY33 ILE34 ASN35 ALA36 PRO37 LYS38 ASP39 VAL40 ALA41 VAL42 HIS43 ARG44 GLU45 GLU46 ILE47 TYR48 GLN49 ARG50 ILE51 GLN52 ALA53 GLY54 LEU55 THR56 ALA57 PRO58 ASP59
Unit 4 MET1 LEU2 ILE3 LEU4 THR5 ARG6 LYS7 VAL8 GLY9 GLU10 SER11 ILE12 ASN13 ILE14 GLY15 ASP16 ASP17 ILE18 THR19 ILE20 THR21 ILE22 LEU23 GLY24 VAL25 SER26 GLY27 GLN28 GLN29 VAL30 ARG31 ILE32 GLY33 ILE34 ASN35 ALA36 PRO37 LYS38 ASP39 VAL40 ALA41 VAL42 HIS43 ARG44 GLU45 GLU46 ILE47 TYR48 GLN49 ARG50 ILE51 GLN52 ALA53 GLY54 LEU55 THR56 ALA57 PRO58 ASP59
Unit 5 MET1 LEU2 ILE3 LEU4 THR5 ARG6 LYS7 VAL8 GLY9 GLU10 SER11 ILE12 ASN13 ILE14 GLY15 ASP16 ASP17 ILE18 THR19 ILE20 THR21 ILE22 LEU23 GLY24 VAL25 SER26 GLY27 GLN28 GLN29 VAL30 ARG31 ILE32 GLY33 ILE34 ASN35 ALA36 PRO37 LYS38 ASP39 VAL40 ALA41 VAL42 HIS43 ARG44 GLU45 GLU46 ILE47 TYR48 GLN49 ARG50 ILE51 GLN52 ALA53 GLY54 LEU55 THR56 ALA57 PRO58 ASP59
Unit 6 MET1 LEU2 ILE3 LEU4 THR5 ARG6 LYS7 VAL8 GLY9 GLU10 SER11 ILE12 ASN13 ILE14 GLY15 ASP16 ASP17 ILE18 THR19 ILE20 THR21 ILE22 LEU23 GLY24 VAL25 SER26 GLY27 GLN28 GLN29 VAL30 ARG31 ILE32 GLY33 ILE34 ASN35 ALA36 PRO37 LYS38 ASP39 VAL40 ALA41 VAL42 HIS43 ARG44 GLU45 GLU46 ILE47 TYR48 GLN49 ARG50 ILE51 GLN52 ALA53 GLY54 LEU55 THR56 ALA57 PRO58 ASP59

Nucleic acids
Unit 7 U1 G2 U3 C4 G5 A6 C7 G8 G9 A10 U11 A12 G13 A14 C15 A16 C17 A18 G19 C20 C21 A22 U23 C24 A25 A26 G27 G28 A29 C30 G31 A32 U33 G34 G35 U36 C37 A38 G39 G40 A41 C42 A43 U44 C45 G46 C47 A48 G49 G50 A51 A52 G53 C54 G55 A56 U57 U58 C59 A60 U61 C62 A63 G64 G65 A66 C67 G68 A69 U70 G71 A72

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany