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Sequence, Chains, Asymmetric and Biological Units

Title THE SOLUTION STRUCTURE OF THE ADAR2 DSRBM-RNA COMPLEX REVEAL SEQUENCE-SPECIFIC READ OUT OF THE MINOR GROOVE
Keywords EDITING, DSRNA RECOGNITION, DSRBM, HYDROLASE-RNA COMPLEX
Experiment NMR
Number of Models  19


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2L3J     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DOUBLE-STRANDED RNA-SPECIFIC EDITASE 1  A 236 3251 0
2  RNA    B 71 2269 0
total       307 5520 0

Proteins
Unit 1 PRO1 GLY2 PRO3 VAL4 LEU5 PRO6 LYS7 ASN8 ALA9 LEU10 MET11 GLN12 LEU13 ASN14 GLU15 ILE16 LYS17 PRO18 GLY19 LEU20 GLN21 TYR22 MET23 LEU24 LEU25 SER26 GLN27 THR28 GLY29 PRO30 VAL31 HIS32 ALA33 PRO34 LEU35 PHE36 VAL37 MET38 SER39 VAL40 GLU41 VAL42 ASN43 GLY44 GLN45 VAL46 PHE47 GLU48 GLY49 SER50 GLY51 PRO52 THR53 LYS54 LYS55 LYS56 ALA57 LYS58 LEU59 HIS60 ALA61 ALA62 GLU63 LYS64 ALA65 LEU66 ARG67 SER68 PHE69 VAL70 GLN71 PHE72 PRO73 ASN74 ALA75 SER76 GLU77 ALA78 HIS79 LEU80 ALA81 MET82 GLY83 ARG84 THR85 LEU86 SER87 VAL88 ASN89 THR90 ASP91 PHE92 THR93 SER94 ASP95 GLN96 ALA97 ASP98 PHE99 PRO100 ASP101 THR102 LEU103 PHE104 ASN105 GLY106 PHE107 GLU108 THR109 PRO110 ASP111 LYS112 SER113 GLU114 PRO115 PRO116 PHE117 TYR118 VAL119 GLY120 SER121 ASN122 GLY123 ASP124 ASP125 SER126 PHE127 SER128 SER129 SER130 GLY131 ASP132 VAL133 SER134 LEU135 SER136 ALA137 SER138 PRO139 VAL140 PRO141 ALA142 SER143 LEU144 THR145 GLN146 PRO147 PRO148 LEU149 PRO150 ILE151 PRO152 PRO153 PRO154 PHE155 PRO156 PRO157 PRO158 SER159 GLY160 LYS161 ASN162 PRO163 VAL164 MET165 ILE166 LEU167 ASN168 GLU169 LEU170 ARG171 PRO172 GLY173 LEU174 LYS175 TYR176 ASP177 PHE178 LEU179 SER180 GLU181 SER182 GLY183 GLU184 SER185 HIS186 ALA187 LYS188 SER189 PHE190 VAL191 MET192 SER193 VAL194 VAL195 VAL196 ASP197 GLY198 GLN199 PHE200 PHE201 GLU202 GLY203 SER204 GLY205 ARG206 ASN207 LYS208 LYS209 LEU210 ALA211 LYS212 ALA213 ARG214 ALA215 ALA216 GLN217 SER218 ALA219 LEU220 ALA221 THR222 VAL223 PHE224 ASN225 LEU226 HIS227 LEU228 LEU229 GLU230 HIS231 HIS232 HIS233 HIS234 HIS235 HIS236

Nucleic acids
Unit 2 G237 G238 C239 A240 U241 U242 A243 A244 G245 G246 U247 G248 G249 G250 U251 G252 G253 A254 A255 U256 A257 G258 U259 A260 U261 A262 A263 C264 A265 A266 U267 A268 U269 G270 C271 U272 A273 A274 A275 U276 G277 U278 U279 G280 U281 U282 A283 U284 A285 G286 U287 A288 U289 C290 C291 C292 A293 C294 C295 U296 A297 C298 C299 C300 U301 G302 A303 U304 G305 C306 C307

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany