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Title | SIMULTANEOUS RECOGNITION OF HIV-1 TAR RNA BULGE AND LOOP SEQUENCES BY CYCLIC PEPTIDE MIMIC OF TAT PROTEIN | |
Keywords | NMR, PEPTIDOMIMETICS, PEPTIDE STRUCTURE, RNA RECOGNITION, IMMUNODEFICIENCY VIRUS, TAR RNA, MIMIC OF RNA BINDING PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX | |
Experiment | NMR | |
Number of Models | 10 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2KDQ | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | L-22 CYCLIC PEPTIDE | A | 14 | 255 | 14 |
2 | RNA | B | 29 | 930 | 0 | |
total | 43 | 1185 | 14 |
Unit 1 | ARG1 VAL2 ARG3 THR4 ARG5 LYS6 GLY7 ARG8 ARG9 ILE10 ARG11 ILE12 DPR13 PRO14 |
Unit 2 | G17 G18 C19 A20 G21 A22 U23 C24 U25 G26 A27 G28 C29 C30 U31 G32 G33 G34 A35 G36 C37 U38 C39 U40 C41 U42 G43 C44 C45 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |