Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title SIMULTANEOUS RECOGNITION OF HIV-1 TAR RNA BULGE AND LOOP SEQUENCES BY CYCLIC PEPTIDE MIMIC OF TAT PROTEIN
Keywords NMR, PEPTIDOMIMETICS, PEPTIDE STRUCTURE, RNA RECOGNITION, IMMUNODEFICIENCY VIRUS, TAR RNA, MIMIC OF RNA BINDING PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX
Experiment NMR
Number of Models  10


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2KDQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   L-22 CYCLIC PEPTIDE  A 14 255 14
2  RNA    B 29 930 0
total       43 1185 14

Proteins
Unit 1 ARG1 VAL2 ARG3 THR4 ARG5 LYS6 GLY7 ARG8 ARG9 ILE10 ARG11 ILE12 DPR13 PRO14

Nucleic acids
Unit 2 G17 G18 C19 A20 G21 A22 U23 C24 U25 G26 A27 G28 C29 C30 U31 G32 G33 G34 A35 G36 C37 U38 C39 U40 C41 U42 G43 C44 C45

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany