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Sequence, Chains, Asymmetric and Biological Units

Title NMR REVEALS ABSENCE OF HYDROGEN BONDING IN ADJACENT UU AND AG MISMATCHES IN AN ISOLATED INTERNAL LOOP FROM RIBOSOMAL RNA.
Keywords NMR STRUCTURE OF RNA LOOP 5' GUGG 3' / 3' CUAC 5', G BASE FLIPPED OUT, 2X2 THERMODYNAMICS, LACK OF HYDROGEN BONDING, ABSENCE OF HYDROGEN BONDING, UU INTERNAL LOOP, UU/AG INTERNAL LOOP, AG INTERNAL LOOP, INTERNAL LOOP FROM PROTEIN L11 BINDING SITE
Experiment NMR
Number of Models  10


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 22 712 0
total       22 712 0

Nucleic acids
Unit 1 G1 G2 A3 G4 U5 G6 G7 C8 C9 G10 A11 A12 A13 G14 G15 C16 A17 U18 C19 U20 C21 C22

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany