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Sequence, Chains, Asymmetric and Biological Units

Title DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP
Keywords HYDROLASE-RNA COMPLEX, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING SECRETED, HELICASE, PROTEASE, HYDROLASE, TRANSFERASE, VIRAL NUCLEOPROTEIN, ENDOPLASMIC RETICULUM, CLEAVAGE ON PAIR OF B RESIDUES, MULTIFUNCTIONAL ENZYME, TRANSCRIPTION REGULATION, SSRNA, VIRION, ATPASE, NUCLEUS, MEMBRANE, NUCLEOTIDYLTRANSF NS3 HELICASE STRUCTURE, ATP-BINDING, RNA-BINDING, FLAVIVIRU GLYCOPROTEIN, RNA-DIRECTED RNA POLYMERASE, RNA REPLICATION, PROTEASE, ENVELOPE PROTEIN, DENGUE VIRUS, METAL-BINDING, TRANSMEMBRANE, TRANSCRIPTION, PHOSPHOPROTEIN, CAPSID PROTEI
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2JLZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SERINE PROTEASE SUBUNIT NS3  A 451 3609 0
2  Protein   SERINE PROTEASE SUBUNIT NS3  B 451 3602 0
3  RNA    C 7 138 0
4  RNA    D 7 138 0
5  Ligand   SERINE PROTEASE SUBUNIT NS3  A 4 0 35
6  Ligand   SERINE PROTEASE SUBUNIT NS3  B 4 0 35
7 Water     357 0 357
total       1281 7487 427
Proteins
Unit 1 GLY168 SER169 ALA170 MET171 GLY172 GLU173 PRO174 ASP175 TYR176 GLU177 VAL178 ASP179 GLU180 ASP181 ILE182 PHE183 ARG184 LYS185 LYS186 ARG187 LEU188 THR189 ILE190 MET191 ASP192 LEU193 HIS194 PRO195 GLY196 ALA197 GLY198 LYS199 THR200 LYS201 ARG202 ILE203 LEU204 PRO205 SER206 ILE207 VAL208 ARG209 GLU210 ALA211 LEU212 LYS213 ARG214 ARG215 LEU216 ARG217 THR218 LEU219 ILE220 LEU221 ALA222 PRO223 THR224 ARG225 VAL226 VAL227 ALA228 ALA229 GLU230 MET231 GLU232 GLU233 ALA234 LEU235 ARG236 GLY237 LEU238 PRO239 ILE240 ARG241 TYR242 GLN243 THR244 PRO245 ALA246 VAL247 LYS248 SER249 ASP250 HIS251 THR252 GLY253 ARG254 GLU255 ILE256 VAL257 ASP258 LEU259 MET260 CYS261 HIS262 ALA263 THR264 PHE265 THR266 THR267 ARG268 LEU269 LEU270 SER271 SER272 THR273 ARG274 VAL275 PRO276 ASN277 TYR278 ASN279 LEU280 ILE281 VAL282 MET283 ASP284 GLU285 ALA286 HIS287 PHE288 THR289 ASP290 PRO291 CYS292 SER293 VAL294 ALA295 ALA296 ARG297 GLY298 TYR299 ILE300 SER301 THR302 ARG303 VAL304 GLU305 MET306 GLY307 GLU308 ALA309 ALA310 ALA311 ILE312 PHE313 MET314 THR315 ALA316 THR317 PRO318 PRO319 GLY320 SER321 ILE322 ASP323 PRO324 PHE325 PRO326 GLN327 SER328 ASN329 SER330 PRO331 ILE332 GLU333 ASP334 ILE335 GLU336 ARG337 GLU338 ILE339 PRO340 GLU341 ARG342 SER343 TRP344 ASN345 THR346 GLY347 PHE348 ASP349 TRP350 ILE351 THR352 ASP353 TYR354 GLN355 GLY356 LYS357 THR358 VAL359 TRP360 PHE361 VAL362 PRO363 SER364 ILE365 LYS366 ALA367 GLY368 ASN369 ASP370 ILE371 ALA372 ASN373 CYS374 LEU375 ARG376 LYS377 SER378 GLY379 LYS380 ARG381 VAL382 ILE383 GLN384 LEU385 SER386 ARG387 LYS388 THR389 PHE390 ASP391 THR392 GLU393 TYR394 PRO395 LYS396 THR397 LYS398 LEU399 THR400 ASP401 TRP402 ASP403 PHE404 VAL405 VAL406 THR407 THR408 ASP409 ILE410 SER411 GLU412 MET413 GLY414 ALA415 ASN416 PHE417 ARG418 ALA419 GLY420 ARG421 VAL422 ILE423 ASP424 PRO425 ARG426 ARG427 CYS428 LEU429 LYS430 PRO431 VAL432 ILE433 LEU434 THR435 ASP436 GLY437 PRO438 GLU439 ARG440 VAL441 ILE442 LEU443 ALA444 GLY445 PRO446 ILE447 PRO448 VAL449 THR450 PRO451 ALA452 SER453 ALA454 ALA455 GLN456 ARG457 ARG458 GLY459 ARG460 ILE461 GLY462 ARG463 ASN464 PRO465 ALA466 GLN467 GLU468 ASP469 ASP470 GLN471 TYR472 VAL473 PHE474 SER475 GLY476 ASP477 PRO478 LEU479 LYS480 ASN481 ASP482 GLU483 ASP484 HIS485 ALA486 HIS487 TRP488 THR489 GLU490 ALA491 LYS492 MET493 LEU494 LEU495 ASP496 ASN497 ILE498 TYR499 THR500 PRO501 GLU502 GLY503 ILE504 ILE505 PRO506 THR507 LEU508 PHE509 GLY510 PRO511 GLU512 ARG513 GLU514 LYS515 THR516 GLN517 ALA518 ILE519 ASP520 GLY521 GLU522 PHE523 ARG524 LEU525 ARG526 GLY527 GLU528 GLN529 ARG530 LYS531 THR532 PHE533 VAL534 GLU535 LEU536 MET537 ARG538 ARG539 GLY540 ASP541 LEU542 PRO543 VAL544 TRP545 LEU546 SER547 TYR548 LYS549 VAL550 ALA551 SER552 ALA553 GLY554 ILE555 SER556 TYR557 LYS558 ASP559 ARG560 GLU561 TRP562 CYS563 PHE564 THR565 GLY566 GLU567 ARG568 ASN569 ASN570 GLN571 ILE572 LEU573 GLU574 GLU575 ASN576 MET577 GLU578 VAL579 GLU580 ILE581 TRP582 THR583 ARG584 GLU585 GLY586 GLU587 LYS588 LYS589 LYS590 LEU591 ARG592 PRO593 LYS594 TRP595 LEU596 ASP597 ALA598 ARG599 VAL600 TYR601 ALA602 ASP603 PRO604 MET605 ALA606 LEU607 LYS608 ASP609 PHE610 LYS611 GLU612 PHE613 ALA614 SER615 GLY616 ARG617 LYS618
Unit 2 GLY168 SER169 ALA170 MET171 GLY172 GLU173 PRO174 ASP175 TYR176 GLU177 VAL178 ASP179 GLU180 ASP181 ILE182 PHE183 ARG184 LYS185 LYS186 ARG187 LEU188 THR189 ILE190 MET191 ASP192 LEU193 HIS194 PRO195 GLY196 ALA197 GLY198 LYS199 THR200 LYS201 ARG202 ILE203 LEU204 PRO205 SER206 ILE207 VAL208 ARG209 GLU210 ALA211 LEU212 LYS213 ARG214 ARG215 LEU216 ARG217 THR218 LEU219 ILE220 LEU221 ALA222 PRO223 THR224 ARG225 VAL226 VAL227 ALA228 ALA229 GLU230 MET231 GLU232 GLU233 ALA234 LEU235 ARG236 GLY237 LEU238 PRO239 ILE240 ARG241 TYR242 GLN243 THR244 PRO245 ALA246 VAL247 LYS248 SER249 ASP250 HIS251 THR252 GLY253 ARG254 GLU255 ILE256 VAL257 ASP258 LEU259 MET260 CYS261 HIS262 ALA263 THR264 PHE265 THR266 THR267 ARG268 LEU269 LEU270 SER271 SER272 THR273 ARG274 VAL275 PRO276 ASN277 TYR278 ASN279 LEU280 ILE281 VAL282 MET283 ASP284 GLU285 ALA286 HIS287 PHE288 THR289 ASP290 PRO291 CYS292 SER293 VAL294 ALA295 ALA296 ARG297 GLY298 TYR299 ILE300 SER301 THR302 ARG303 VAL304 GLU305 MET306 GLY307 GLU308 ALA309 ALA310 ALA311 ILE312 PHE313 MET314 THR315 ALA316 THR317 PRO318 PRO319 GLY320 SER321 ILE322 ASP323 PRO324 PHE325 PRO326 GLN327 SER328 ASN329 SER330 PRO331 ILE332 GLU333 ASP334 ILE335 GLU336 ARG337 GLU338 ILE339 PRO340 GLU341 ARG342 SER343 TRP344 ASN345 THR346 GLY347 PHE348 ASP349 TRP350 ILE351 THR352 ASP353 TYR354 GLN355 GLY356 LYS357 THR358 VAL359 TRP360 PHE361 VAL362 PRO363 SER364 ILE365 LYS366 ALA367 GLY368 ASN369 ASP370 ILE371 ALA372 ASN373 CYS374 LEU375 ARG376 LYS377 SER378 GLY379 LYS380 ARG381 VAL382 ILE383 GLN384 LEU385 SER386 ARG387 LYS388 THR389 PHE390 ASP391 THR392 GLU393 TYR394 PRO395 LYS396 THR397 LYS398 LEU399 THR400 ASP401 TRP402 ASP403 PHE404 VAL405 VAL406 THR407 THR408 ASP409 ILE410 SER411 GLU412 MET413 GLY414 ALA415 ASN416 PHE417 ARG418 ALA419 GLY420 ARG421 VAL422 ILE423 ASP424 PRO425 ARG426 ARG427 CYS428 LEU429 LYS430 PRO431 VAL432 ILE433 LEU434 THR435 ASP436 GLY437 PRO438 GLU439 ARG440 VAL441 ILE442 LEU443 ALA444 GLY445 PRO446 ILE447 PRO448 VAL449 THR450 PRO451 ALA452 SER453 ALA454 ALA455 GLN456 ARG457 ARG458 GLY459 ARG460 ILE461 GLY462 ARG463 ASN464 PRO465 ALA466 GLN467 GLU468 ASP469 ASP470 GLN471 TYR472 VAL473 PHE474 SER475 GLY476 ASP477 PRO478 LEU479 LYS480 ASN481 ASP482 GLU483 ASP484 HIS485 ALA486 HIS487 TRP488 THR489 GLU490 ALA491 LYS492 MET493 LEU494 LEU495 ASP496 ASN497 ILE498 TYR499 THR500 PRO501 GLU502 GLY503 ILE504 ILE505 PRO506 THR507 LEU508 PHE509 GLY510 PRO511 GLU512 ARG513 GLU514 LYS515 THR516 GLN517 ALA518 ILE519 ASP520 GLY521 GLU522 PHE523 ARG524 LEU525 ARG526 GLY527 GLU528 GLN529 ARG530 LYS531 THR532 PHE533 VAL534 GLU535 LEU536 MET537 ARG538 ARG539 GLY540 ASP541 LEU542 PRO543 VAL544 TRP545 LEU546 SER547 TYR548 LYS549 VAL550 ALA551 SER552 ALA553 GLY554 ILE555 SER556 TYR557 LYS558 ASP559 ARG560 GLU561 TRP562 CYS563 PHE564 THR565 GLY566 GLU567 ARG568 ASN569 ASN570 GLN571 ILE572 LEU573 GLU574 GLU575 ASN576 MET577 GLU578 VAL579 GLU580 ILE581 TRP582 THR583 ARG584 GLU585 GLY586 GLU587 LYS588 LYS589 LYS590 LEU591 ARG592 PRO593 LYS594 TRP595 LEU596 ASP597 ALA598 ARG599 VAL600 TYR601 ALA602 ASP603 PRO604 MET605 ALA606 LEU607 LYS608 ASP609 PHE610 LYS611 GLU612 PHE613 ALA614 SER615 GLY616 ARG617 LYS618
Nucleic acids
Unit 3 A1 G2 A3 C4 U5 A6 A7
Unit 4 A1 G2 A3 C4 U5 A6 A7
Ligands
Unit 5 ADP1619 MN1620 CL1621 GOL1622
Unit 6 ADP1619 MN1620 CL1621 GOL1622
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany