2JIP - Sequence, Chains, Asymmetric and Biological Units

• Title: A NEW CATALYTIC MECHANISM OF PERIPLASMIC NITRATE REDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 FROM CRYSTALLOGRAPHIC AND EPR DATA AND BASED ON DETAILED ANALYSIS OF THE SIXTH LIGAND
• Keywords: NITRATE ASSIMILATION, NITROGENOUS ACCEPTOR, IRON, TRANSPORT, MOLYBDENUM, PERIPLASMIC, DISULFIDE BOND, ELECTRON TRANSPORT IRON-SULFUR, IRON- SULFUR, METAL-BINDING, DISSIMILATORY NIT REDUCTASE, MOLYBDOPTERIN COFACTOR, SULFIDO LIGAND, 4FE-4S C OXIDOREDUCTASE, ELECTRON PARAMAGNETIC RESONANCE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2JIP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PERIPLASMIC NITRATE REDUCTASE	A	720	5622	0
2	Ligand	PERIPLASMIC NITRATE REDUCTASE	A	5	0	104
3	Water			620	0	620
total				1345	5622	724

Proteins

Unit 1

ARG 4 PRO 5 GLU 6 LYS 7 TRP 8 VAL 9 LYS 10 GLY 11 VAL 12 CYS 13 ARG 14 TYR 15 CYS 16 GLY 17 THR 18 GLY 19 CYS 20 GLY 21 VAL 22 LEU 23 VAL 24 GLY 25 VAL 26 LYS 27 ASP 28 GLY 29 LYS 30 ALA 31 VAL 32 ALA 33 ILE 34 GLN 35 GLY 36 ASN 37 PRO 38 ASN 39 ASN 40 HIS 41 ASN 42 ALA 43 GLY 44 LEU 45 LEU 46 CYS 47 LEU 48 LYS 49 GLY 50 SER 51 LEU 52 LEU 53 ILE 54 PRO 55 VAL 56 LEU 57 ASN 58 SER 59 LYS 60 GLU 61 ARG 62 VAL 63 THR 64 GLN 65 PRO 66 LEU 67 VAL 68 ARG 69 ARG 70 HIS 71 LYS 72 GLY 73 GLY 74 LYS 75 LEU 76 GLU 77 PRO 78 VAL 79 SER 80 TRP 81 ASP 82 GLU 83 ALA 84 LEU 85 ASP 86 LEU 87 MET 88 ALA 89 SER 90 ARG 91 PHE 92 ARG 93 SER 94 SER 95 ILE 96 ASP 97 MET 98 TYR 99 GLY 100 PRO 101 ASN 102 SER 103 VAL 104 ALA 105 TRP 106 TYR 107 GLY 108 SER 109 GLY 110 GLN 111 CYS 112 LEU 113 THR 114 GLU 115 GLU 116 SER 117 TYR 118 VAL 119 ALA 120 ASN 121 LYS 122 ILE 123 PHE 124 LYS 125 GLY 126 GLY 127 PHE 128 GLY 129 THR 130 ASN 131 ASN 132 VAL 133 ASP 134 GLY 135 ASN 136 PRO 137 ARG 138 LEU 139 CYS 140 MET 141 ALA 142 SER 143 ALA 144 VAL 145 GLY 146 GLY 147 TYR 148 VAL 149 THR 150 SER 151 PHE 152 GLY 153 LYS 154 ASP 155 GLU 156 PRO 157 MET 158 GLY 159 THR 160 TYR 161 ALA 162 ASP 163 ILE 164 ASP 165 GLN 166 ALA 167 THR 168 CYS 169 PHE 170 PHE 171 ILE 172 ILE 173 GLY 174 SER 175 ASN 176 THR 177 SER 178 GLU 179 ALA 180 HIS 181 PRO 182 VAL 183 LEU 184 PHE 185 ARG 186 ARG 187 ILE 188 ALA 189 ARG 190 ARG 191 LYS 192 GLN 193 VAL 194 GLU 195 PRO 196 GLY 197 VAL 198 LYS 199 ILE 200 ILE 201 VAL 202 ALA 203 ASP 204 PRO 205 ARG 206 ARG 207 THR 208 ASN 209 THR 210 SER 211 ARG 212 ILE 213 ALA 214 ASP 215 MET 216 HIS 217 VAL 218 ALA 219 PHE 220 ARG 221 PRO 222 GLY 223 THR 224 ASP 225 LEU 226 ALA 227 PHE 228 MET 229 HIS 230 SER 231 MET 232 ALA 233 TRP 234 VAL 235 ILE 236 ILE 237 ASN 238 GLU 239 GLU 240 LEU 241 ASP 242 ASN 243 PRO 244 ARG 245 PHE 246 TRP 247 GLN 248 ARG 249 TYR 250 VAL 251 ASN 252 PHE 253 MET 254 ASP 255 ALA 256 GLU 257 GLY 258 LYS 259 PRO 260 SER 261 ASP 262 PHE 263 GLU 264 GLY 265 TYR 266 LYS 267 ALA 268 PHE 269 LEU 270 GLU 271 ASN 272 TYR 273 ARG 274 PRO 275 GLU 276 LYS 277 VAL 278 ALA 279 GLU 280 ILE 281 CYS 282 ARG 283 VAL 284 PRO 285 VAL 286 GLU 287 GLN 288 ILE 289 TYR 290 GLY 291 ALA 292 ALA 293 ARG 294 ALA 295 PHE 296 ALA 297 GLU 298 SER 299 ALA 300 ALA 301 THR 302 MET 303 SER 304 LEU 305 TRP 306 CYS 307 MET 308 GLY 309 ILE 310 ASN 311 GLN 312 ARG 313 VAL 314 GLN 315 GLY 316 VAL 317 PHE 318 ALA 319 ASN 320 ASN 321 LEU 322 ILE 323 HIS 324 ASN 325 LEU 326 HIS 327 LEU 328 ILE 329 THR 330 GLY 331 GLN 332 ILE 333 CYS 334 ARG 335 PRO 336 GLY 337 ALA 338 THR 339 SER 340 PHE 341 SER 342 LEU 343 THR 344 GLY 345 GLN 346 PRO 347 ASN 348 ALA 349 CYS 350 GLY 351 GLY 352 VAL 353 ARG 354 ASP 355 GLY 356 GLY 357 ALA 358 LEU 359 SER 360 HIS 361 LEU 362 LEU 363 PRO 364 ALA 365 GLY 366 ARG 367 ALA 368 ILE 369 PRO 370 ASN 371 ALA 372 LYS 373 HIS 374 ARG 375 ALA 376 GLU 377 MET 378 GLU 379 LYS 380 LEU 381 TRP 382 GLY 383 LEU 384 PRO 385 GLU 386 GLY 387 ARG 388 ILE 389 ALA 390 PRO 391 GLU 392 PRO 393 GLY 394 TYR 395 HIS 396 THR 397 VAL 398 ALA 399 LEU 400 PHE 401 GLU 402 ALA 403 LEU 404 GLY 405 ARG 406 GLY 407 ASP 408 VAL 409 LYS 410 CYS 411 MET 412 ILE 413 ILE 414 CYS 415 GLU 416 THR 417 ASN 418 PRO 419 ALA 420 HIS 421 THR 422 LEU 423 PRO 424 ASN 425 LEU 426 ASN 427 LYS 428 VAL 429 HIS 430 LYS 431 ALA 432 MET 433 SER 434 HIS 435 PRO 436 GLU 437 SER 438 PHE 439 ILE 440 VAL 441 CYS 442 ILE 443 GLU 444 ALA 445 PHE 446 PRO 447 ASP 448 ALA 449 VAL 450 THR 451 LEU 452 GLU 453 TYR 454 ALA 455 ASP 456 LEU 457 VAL 458 LEU 459 PRO 460 PRO 461 ALA 462 PHE 463 TRP 464 CYS 465 GLU 466 ARG 467 ASP 468 GLY 469 VAL 470 TYR 471 GLY 472 CYS 473 GLY 474 GLU 475 ARG 476 ARG 477 TYR 478 SER 479 LEU 480 THR 481 GLU 482 LYS 483 ALA 484 VAL 485 ASP 486 PRO 487 PRO 488 GLY 489 GLN 490 CYS 491 ARG 492 PRO 493 THR 494 VAL 495 ASN 496 THR 497 LEU 498 VAL 499 GLU 500 PHE 501 ALA 502 ARG 503 ARG 504 ALA 505 GLY 506 VAL 507 ASP 508 PRO 509 GLN 510 LEU 511 VAL 512 ASN 513 PHE 514 ARG 515 ASN 516 ALA 517 GLU 518 ASP 519 VAL 520 TRP 521 ASN 522 GLU 523 TRP 524 ARG 525 MET 526 VAL 527 SER 528 LYS 529 GLY 530 THR 531 THR 532 TYR 533 ASP 534 PHE 535 TRP 536 GLY 537 MET 538 THR 539 ARG 540 GLU 541 ARG 542 LEU 543 ARG 544 LYS 545 GLU 546 SER 547 GLY 548 LEU 549 ILE 550 TRP 551 PRO 552 CYS 553 PRO 554 SER 555 GLU 556 ASP 557 HIS 558 PRO 559 GLY 560 THR 561 SER 562 LEU 563 ARG 564 TYR 565 VAL 566 ARG 567 GLY 568 GLN 569 ASP 570 PRO 571 CYS 572 VAL 573 PRO 574 ALA 575 ASP 576 HIS 577 PRO 578 ASP 579 ARG 580 PHE 581 PHE 582 PHE 583 TYR 584 GLY 585 LYS 586 PRO 587 ASP 588 GLY 589 ARG 590 ALA 591 VAL 592 ILE 593 TRP 594 MET 595 ARG 596 PRO 597 ALA 598 LYS 599 GLY 600 ALA 601 ALA 602 GLU 603 GLU 604 PRO 605 ASP 606 ALA 607 GLU 608 TYR 609 PRO 610 LEU 611 TYR 612 LEU 613 THR 614 SER 615 MET 616 ARG 617 VAL 618 ILE 619 ASP 620 HIS 621 TRP 622 HIS 623 THR 624 ALA 625 THR 626 MET 627 THR 628 GLY 629 LYS 630 VAL 631 PRO 632 GLU 633 LEU 634 GLN 635 LYS 636 ALA 637 ASN 638 PRO 639 ILE 640 ALA 641 PHE 642 VAL 643 GLU 644 ILE 645 ASN 646 GLU 647 GLU 648 ASP 649 ALA 650 ALA 651 ARG 652 THR 653 GLY 654 ILE 655 LYS 656 HIS 657 GLY 658 ASP 659 SER 660 VAL 661 ILE 662 VAL 663 GLU 664 THR 665 ARG 666 ARG 667 ASP 668 ALA 669 MET 670 GLU 671 LEU 672 PRO 673 ALA 674 ARG 675 VAL 676 SER 677 ASP 678 VAL 679 CYS 680 ARG 681 PRO 682 GLY 683 LEU 684 ILE 685 ALA 686 VAL 687 PRO 688 PHE 689 PHE 690 ASP 691 PRO 692 LYS 693 LYS 694 LEU 695 VAL 696 ASN 697 LYS 698 LEU 699 PHE 700 LEU 701 ASP 702 ALA 703 THR 704 ASP 705 PRO 706 VAL 707 SER 708 ARG 709 GLU 710 PRO 711 GLU 712 TYR 713 LYS 714 ILE 715 CYS 716 ALA 717 ALA 718 ARG 719 VAL 720 ARG 721 LYS 722 ALA 723

Ligands

Unit 2

SF4 800 MO 810 MGD 811 MGD 812 UNX 813