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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE WITH COVALENT REACTION INTERMEDIATE
Keywords LYASE, FLAVOPROTEIN, DECARBOXYLASE, OXALATE DEGRADATION, INTERMEDIATE COMPLEX, THIAMIN DIPHOSPHATE-DEPENDENT, THIAMI PYROPHOSPHATE, NON- OXIDATIVE DECARBOXYLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2JI7     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   OXALYL-COA DECARBOXYLASE  A 559 4174 0
2  Protein   OXALYL-COA DECARBOXYLASE  B 559 4174 0
3  Ligand   OXALYL-COA DECARBOXYLASE  A 7 0 171
4  Ligand   OXALYL-COA DECARBOXYLASE  B 7 0 171
5 Water     1185 0 1185
total       2317 8348 1527

Proteins
Unit 1 VAL7 GLU8 LEU9 THR10 ASP11 GLY12 PHE13 HIS14 VAL15 LEU16 ILE17 ASP18 ALA19 LEU20 LYS21 MET22 ASN23 ASP24 ILE25 ASP26 THR27 MET28 TYR29 GLY30 VAL31 VAL32 GLY33 ILE34 PRO35 ILE36 THR37 ASN38 LEU39 ALA40 ARG41 MET42 TRP43 GLN44 ASP45 ASP46 GLY47 GLN48 ARG49 PHE50 TYR51 SER52 PHE53 ARG54 HIS55 GLU56 GLN57 HIS58 ALA59 GLY60 TYR61 ALA62 ALA63 SER64 ILE65 ALA66 GLY67 TYR68 ILE69 GLU70 GLY71 LYS72 PRO73 GLY74 VAL75 CYS76 LEU77 THR78 VAL79 SER80 ALA81 PRO82 GLY83 PHE84 LEU85 ASN86 GLY87 VAL88 THR89 SER90 LEU91 ALA92 HIS93 ALA94 THR95 THR96 ASN97 CYS98 PHE99 PRO100 MET101 ILE102 LEU103 LEU104 SER105 GLY106 SER107 SER108 GLU109 ARG110 GLU111 ILE112 VAL113 ASP114 LEU115 GLN116 GLN117 GLY118 ASP119 TYR120 GLU121 GLU122 MET123 ASP124 GLN125 MET126 ASN127 VAL128 ALA129 ARG130 PRO131 HIS132 CYS133 LYS134 ALA135 SER136 PHE137 ARG138 ILE139 ASN140 SER141 ILE142 LYS143 ASP144 ILE145 PRO146 ILE147 GLY148 ILE149 ALA150 ARG151 ALA152 VAL153 ARG154 THR155 ALA156 VAL157 SER158 GLY159 ARG160 PRO161 GLY162 GLY163 VAL164 TYR165 VAL166 ASP167 LEU168 PRO169 ALA170 LYS171 LEU172 PHE173 GLY174 GLN175 THR176 ILE177 SER178 VAL179 GLU180 GLU181 ALA182 ASN183 LYS184 LEU185 LEU186 PHE187 LYS188 PRO189 ILE190 ASP191 PRO192 ALA193 PRO194 ALA195 GLN196 ILE197 PRO198 ALA199 GLU200 ASP201 ALA202 ILE203 ALA204 ARG205 ALA206 ALA207 ASP208 LEU209 ILE210 LYS211 ASN212 ALA213 LYS214 ARG215 PRO216 VAL217 ILE218 MET219 LEU220 GLY221 LYS222 GLY223 ALA224 ALA225 TYR226 ALA227 GLN228 CYS229 ASP230 ASP231 GLU232 ILE233 ARG234 ALA235 LEU236 VAL237 GLU238 GLU239 THR240 GLY241 ILE242 PRO243 PHE244 LEU245 PRO246 MET247 GLY248 MET249 ALA250 LYS251 GLY252 LEU253 LEU254 PRO255 ASP256 ASN257 HIS258 PRO259 GLN260 SER261 ALA262 ALA263 ALA264 THR265 ARG266 ALA267 PHE268 ALA269 LEU270 ALA271 GLN272 CYS273 ASP274 VAL275 CYS276 VAL277 LEU278 ILE279 GLY280 ALA281 ARG282 LEU283 ASN284 TRP285 LEU286 MET287 GLN288 HIS289 GLY290 LYS291 GLY292 LYS293 THR294 TRP295 GLY296 ASP297 GLU298 LEU299 LYS300 LYS301 TYR302 VAL303 GLN304 ILE305 ASP306 ILE307 GLN308 ALA309 ASN310 GLU311 MET312 ASP313 SER314 ASN315 GLN316 PRO317 ILE318 ALA319 ALA320 PRO321 VAL322 VAL323 GLY324 ASP325 ILE326 LYS327 SER328 ALA329 VAL330 SER331 LEU332 LEU333 ARG334 LYS335 ALA336 LEU337 LYS338 GLY339 ALA340 PRO341 LYS342 ALA343 ASP344 ALA345 GLU346 TRP347 THR348 GLY349 ALA350 LEU351 LYS352 ALA353 LYS354 VAL355 ASP356 GLY357 ASN358 LYS359 ALA360 LYS361 LEU362 ALA363 GLY364 LYS365 MET366 THR367 ALA368 GLU369 THR370 PRO371 SER372 GLY373 MET374 MET375 ASN376 TYR377 SER378 ASN379 SER380 LEU381 GLY382 VAL383 VAL384 ARG385 ASP386 PHE387 MET388 LEU389 ALA390 ASN391 PRO392 ASP393 ILE394 SER395 LEU396 VAL397 ASN398 GLU399 GLY400 ALA401 ASN402 ALA403 LEU404 ASP405 ASN406 THR407 ARG408 MET409 ILE410 VAL411 ASP412 MET413 LEU414 LYS415 PRO416 ARG417 LYS418 ARG419 LEU420 ASP421 SER422 GLY423 THR424 TRP425 GLY426 VAL427 MET428 GLY429 ILE430 GLY431 MET432 GLY433 TYR434 CYS435 VAL436 ALA437 ALA438 ALA439 ALA440 VAL441 THR442 GLY443 LYS444 PRO445 VAL446 ILE447 ALA448 VAL449 GLU450 GLY451 ASP452 SER453 ALA454 PHE455 GLY456 PHE457 SER458 GLY459 MET460 GLU461 LEU462 GLU463 THR464 ILE465 CYS466 ARG467 TYR468 ASN469 LEU470 PRO471 VAL472 THR473 VAL474 ILE475 ILE476 MET477 ASN478 ASN479 GLY480 GLY481 ILE482 TYR483 LYS484 GLY485 ASN486 GLU487 ALA488 ASP489 PRO490 GLN491 PRO492 GLY493 VAL494 ILE495 SER496 CYS497 THR498 ARG499 LEU500 THR501 ARG502 GLY503 ARG504 TYR505 ASP506 MET507 MET508 MET509 GLU510 ALA511 PHE512 GLY513 GLY514 LYS515 GLY516 TYR517 VAL518 ALA519 ASN520 THR521 PRO522 ALA523 GLU524 LEU525 LYS526 ALA527 ALA528 LEU529 GLU530 GLU531 ALA532 VAL533 ALA534 SER535 GLY536 LYS537 PRO538 CYS539 LEU540 ILE541 ASN542 ALA543 MET544 ILE545 ASP546 PRO547 ASP548 ALA549 GLY550 VAL551 GLU552 SER553 GLY554 ARG555 ILE556 LYS557 SER558 LEU559 ASN560 VAL561 VAL562 SER563 LYS564 VAL565
Unit 2 VAL7 GLU8 LEU9 THR10 ASP11 GLY12 PHE13 HIS14 VAL15 LEU16 ILE17 ASP18 ALA19 LEU20 LYS21 MET22 ASN23 ASP24 ILE25 ASP26 THR27 MET28 TYR29 GLY30 VAL31 VAL32 GLY33 ILE34 PRO35 ILE36 THR37 ASN38 LEU39 ALA40 ARG41 MET42 TRP43 GLN44 ASP45 ASP46 GLY47 GLN48 ARG49 PHE50 TYR51 SER52 PHE53 ARG54 HIS55 GLU56 GLN57 HIS58 ALA59 GLY60 TYR61 ALA62 ALA63 SER64 ILE65 ALA66 GLY67 TYR68 ILE69 GLU70 GLY71 LYS72 PRO73 GLY74 VAL75 CYS76 LEU77 THR78 VAL79 SER80 ALA81 PRO82 GLY83 PHE84 LEU85 ASN86 GLY87 VAL88 THR89 SER90 LEU91 ALA92 HIS93 ALA94 THR95 THR96 ASN97 CYS98 PHE99 PRO100 MET101 ILE102 LEU103 LEU104 SER105 GLY106 SER107 SER108 GLU109 ARG110 GLU111 ILE112 VAL113 ASP114 LEU115 GLN116 GLN117 GLY118 ASP119 TYR120 GLU121 GLU122 MET123 ASP124 GLN125 MET126 ASN127 VAL128 ALA129 ARG130 PRO131 HIS132 CYS133 LYS134 ALA135 SER136 PHE137 ARG138 ILE139 ASN140 SER141 ILE142 LYS143 ASP144 ILE145 PRO146 ILE147 GLY148 ILE149 ALA150 ARG151 ALA152 VAL153 ARG154 THR155 ALA156 VAL157 SER158 GLY159 ARG160 PRO161 GLY162 GLY163 VAL164 TYR165 VAL166 ASP167 LEU168 PRO169 ALA170 LYS171 LEU172 PHE173 GLY174 GLN175 THR176 ILE177 SER178 VAL179 GLU180 GLU181 ALA182 ASN183 LYS184 LEU185 LEU186 PHE187 LYS188 PRO189 ILE190 ASP191 PRO192 ALA193 PRO194 ALA195 GLN196 ILE197 PRO198 ALA199 GLU200 ASP201 ALA202 ILE203 ALA204 ARG205 ALA206 ALA207 ASP208 LEU209 ILE210 LYS211 ASN212 ALA213 LYS214 ARG215 PRO216 VAL217 ILE218 MET219 LEU220 GLY221 LYS222 GLY223 ALA224 ALA225 TYR226 ALA227 GLN228 CYS229 ASP230 ASP231 GLU232 ILE233 ARG234 ALA235 LEU236 VAL237 GLU238 GLU239 THR240 GLY241 ILE242 PRO243 PHE244 LEU245 PRO246 MET247 GLY248 MET249 ALA250 LYS251 GLY252 LEU253 LEU254 PRO255 ASP256 ASN257 HIS258 PRO259 GLN260 SER261 ALA262 ALA263 ALA264 THR265 ARG266 ALA267 PHE268 ALA269 LEU270 ALA271 GLN272 CYS273 ASP274 VAL275 CYS276 VAL277 LEU278 ILE279 GLY280 ALA281 ARG282 LEU283 ASN284 TRP285 LEU286 MET287 GLN288 HIS289 GLY290 LYS291 GLY292 LYS293 THR294 TRP295 GLY296 ASP297 GLU298 LEU299 LYS300 LYS301 TYR302 VAL303 GLN304 ILE305 ASP306 ILE307 GLN308 ALA309 ASN310 GLU311 MET312 ASP313 SER314 ASN315 GLN316 PRO317 ILE318 ALA319 ALA320 PRO321 VAL322 VAL323 GLY324 ASP325 ILE326 LYS327 SER328 ALA329 VAL330 SER331 LEU332 LEU333 ARG334 LYS335 ALA336 LEU337 LYS338 GLY339 ALA340 PRO341 LYS342 ALA343 ASP344 ALA345 GLU346 TRP347 THR348 GLY349 ALA350 LEU351 LYS352 ALA353 LYS354 VAL355 ASP356 GLY357 ASN358 LYS359 ALA360 LYS361 LEU362 ALA363 GLY364 LYS365 MET366 THR367 ALA368 GLU369 THR370 PRO371 SER372 GLY373 MET374 MET375 ASN376 TYR377 SER378 ASN379 SER380 LEU381 GLY382 VAL383 VAL384 ARG385 ASP386 PHE387 MET388 LEU389 ALA390 ASN391 PRO392 ASP393 ILE394 SER395 LEU396 VAL397 ASN398 GLU399 GLY400 ALA401 ASN402 ALA403 LEU404 ASP405 ASN406 THR407 ARG408 MET409 ILE410 VAL411 ASP412 MET413 LEU414 LYS415 PRO416 ARG417 LYS418 ARG419 LEU420 ASP421 SER422 GLY423 THR424 TRP425 GLY426 VAL427 MET428 GLY429 ILE430 GLY431 MET432 GLY433 TYR434 CYS435 VAL436 ALA437 ALA438 ALA439 ALA440 VAL441 THR442 GLY443 LYS444 PRO445 VAL446 ILE447 ALA448 VAL449 GLU450 GLY451 ASP452 SER453 ALA454 PHE455 GLY456 PHE457 SER458 GLY459 MET460 GLU461 LEU462 GLU463 THR464 ILE465 CYS466 ARG467 TYR468 ASN469 LEU470 PRO471 VAL472 THR473 VAL474 ILE475 ILE476 MET477 ASN478 ASN479 GLY480 GLY481 ILE482 TYR483 LYS484 GLY485 ASN486 GLU487 ALA488 ASP489 PRO490 GLN491 PRO492 GLY493 VAL494 ILE495 SER496 CYS497 THR498 ARG499 LEU500 THR501 ARG502 GLY503 ARG504 TYR505 ASP506 MET507 MET508 MET509 GLU510 ALA511 PHE512 GLY513 GLY514 LYS515 GLY516 TYR517 VAL518 ALA519 ASN520 THR521 PRO522 ALA523 GLU524 LEU525 LYS526 ALA527 ALA528 LEU529 GLU530 GLU531 ALA532 VAL533 ALA534 SER535 GLY536 LYS537 PRO538 CYS539 LEU540 ILE541 ASN542 ALA543 MET544 ILE545 ASP546 PRO547 ASP548 ALA549 GLY550 VAL551 GLU552 SER553 GLY554 ARG555 ILE556 LYS557 SER558 LEU559 ASN560 VAL561 VAL562 SER563 LYS564 VAL565

Ligands
Unit 3 OXT1566 MG1567 ADP1568 PGE1569 B3P1570 B3P1571 B3P1572
Unit 4 OXT1566 MG1567 ADP1568 PGE1569 B3P1570 B3P1571 B3P1572

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany