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Sequence, Chains, Asymmetric and Biological Units

Title E. COLI 2-OXOGLUTARATE DEHYDROGENASE (E1O)
Keywords 2-OXOGLUTARATE DEHYDROGENASE, FLAVOPROTEIN, OXIDOREDUCTASE, DIPHOSPHATE, THIAMINE PYROPHOSPHATE, ADENOSINE MONOPHOSPHAT KGDH, OGDH, GLYCOLYSIS, OXALOACETATE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2JGD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT  A 812 6309 0
2  Protein   2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT  B 807 6254 0
3  Ligand   2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT  A 1 0 23
4  Ligand   2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT  B 1 0 23
5 Water     735 0 735
total       2356 12563 781
Proteins
Unit 1 ASP84 THR85 ASN86 VAL87 LYS88 GLN89 VAL90 LYS91 VAL92 LEU93 GLN94 LEU95 ILE96 ASN97 ALA98 TYR99 ARG100 PHE101 ARG102 GLY103 HIS104 GLN105 HIS106 ALA107 ASN108 LEU109 ASP110 PRO111 LEU112 GLY113 LEU114 TRP115 GLN116 GLN117 ASP118 ASP122 LEU123 ASP124 PRO125 SER126 PHE127 HIS128 ASP129 LEU130 THR131 GLU132 ASP134 PHE135 GLN136 GLU137 THR138 PHE139 ASN140 VAL141 GLY142 SER143 PHE144 ALA145 GLU149 THR150 MET151 LYS152 LEU153 GLY154 GLU155 LEU156 LEU157 GLU158 ALA159 LEU160 LYS161 GLN162 THR163 TYR164 CYS165 GLY166 PRO167 ILE168 GLY169 ALA170 GLU171 TYR172 MET173 HIS174 ILE175 THR176 SER177 THR178 GLU179 GLU180 LYS181 ARG182 TRP183 ILE184 GLN185 GLN186 ARG187 ILE188 GLU189 SER190 ARG192 ALA193 THR194 PHE195 ASN196 SER197 GLU198 GLU199 LYS200 LYS201 ARG202 PHE203 LEU204 SER205 GLU206 LEU207 THR208 ALA209 ALA210 GLU211 GLY212 LEU213 GLU214 ARG215 TYR216 LEU217 GLY218 ALA219 LYS220 PHE221 PRO222 GLY223 ARG226 PHE227 SER228 LEU229 GLU230 GLY231 GLY232 ASP233 ALA234 LEU235 ILE236 PRO237 MET238 LEU239 LYS240 GLU241 MET242 ILE243 ARG244 HIS245 ALA246 GLY247 ASN248 SER249 GLY250 THR251 ARG252 GLU253 VAL254 VAL255 LEU256 GLY257 MET258 ALA259 HIS260 ARG261 GLY262 ARG263 LEU264 ASN265 VAL266 LEU267 VAL268 ASN269 VAL270 LEU271 GLY272 LYS273 LYS274 PRO275 GLN276 ASP277 LEU278 PHE279 ASP280 GLU281 PHE282 ALA283 GLY284 LYS285 HIS286 HIS289 LEU290 GLY291 THR292 GLY293 ASP294 VAL295 LYS296 TYR297 HIS298 MET299 GLY300 PHE301 SER302 SER303 ASP304 PHE305 GLN306 THR307 ASP308 GLY309 GLY310 LEU311 VAL312 HIS313 LEU314 ALA315 LEU316 ALA317 PHE318 ASN319 PRO320 SER321 HIS322 LEU323 GLU324 ILE325 VAL326 SER327 PRO328 VAL329 VAL330 ILE331 GLY332 SER333 VAL334 ARG335 ALA336 ARG337 LEU338 ASP339 ARG340 LEU341 ASP342 GLU343 PRO344 SER345 SER346 ASN347 LYS348 VAL349 LEU350 PRO351 ILE352 THR353 ILE354 HIS355 GLY356 ASP357 ALA358 ALA359 VAL360 THR361 GLY362 GLN363 GLY364 VAL365 VAL366 GLN367 GLU368 THR369 LEU370 ASN371 MET372 SER373 LYS374 ALA375 ARG376 GLY377 TYR378 GLU379 VAL380 GLY381 GLY382 THR383 VAL384 ARG385 ILE386 VAL387 ILE388 ASN389 ASN390 GLN391 TYR407 CYS408 THR409 ASP410 ILE411 GLY412 LYS413 MET414 VAL415 GLN416 ALA417 PRO418 ILE419 PHE420 HIS421 VAL422 ASN423 ALA424 ASP425 ASP426 PRO427 GLU428 ALA429 VAL430 ALA431 PHE432 VAL433 THR434 ARG435 LEU436 ALA437 LEU438 ASP439 PHE440 ARG441 ASN442 THR443 PHE444 LYS445 ARG446 ASP447 VAL448 PHE449 ILE450 ASP451 LEU452 VAL453 CYS454 TYR455 ARG456 ARG457 HIS458 GLN470 PRO471 LEU472 MET473 TYR474 GLN475 LYS476 ILE477 LYS478 LYS479 HIS480 PRO481 THR482 PRO483 ARG484 LYS485 ILE486 TYR487 ALA488 ASP489 LYS490 LEU491 GLU492 GLN493 GLU494 LYS495 VAL496 ALA497 THR498 LEU499 GLU500 ASP501 ALA502 THR503 GLU504 MET505 VAL506 ASN507 LEU508 TYR509 ARG510 ASP511 ALA512 LEU513 ASP514 ALA515 GLY516 ASP517 CYS518 VAL519 VAL520 ALA521 GLU522 TRP523 ARG524 PRO525 MET526 ASN527 MET528 HIS529 SER530 PHE531 THR532 TRP533 SER534 PRO535 TYR536 LEU537 ASN538 HIS539 GLU540 TRP541 ASP542 GLU543 GLU544 TYR545 PRO546 ASN547 LYS548 VAL549 GLU550 MET551 LYS552 ARG553 LEU554 GLN555 GLU556 LEU557 ALA558 LYS559 ARG560 ILE561 SER562 THR563 VAL564 PRO565 GLU566 ALA567 VAL568 GLU569 MET570 GLN571 SER572 ARG573 VAL574 ALA575 LYS576 ILE577 TYR578 GLY579 ASP580 ARG581 GLN582 ALA583 MET584 ALA585 ALA586 GLY587 GLU588 LYS589 LEU590 PHE591 ASP592 TRP593 GLY594 GLY595 ALA596 GLU597 ASN598 LEU599 ALA600 TYR601 ALA602 THR603 LEU604 VAL605 ASP606 GLU607 GLY608 ILE609 PRO610 VAL611 ARG612 LEU613 SER614 GLY615 GLU616 ASP617 SER618 GLY619 ARG620 GLY621 THR622 PHE623 PHE624 HIS625 ARG626 HIS627 ALA628 VAL629 ILE630 HIS631 ASN632 GLN633 SER634 ASN635 GLY636 SER637 THR638 TYR639 THR640 PRO641 LEU642 GLN643 HIS644 ILE645 HIS646 ASN647 GLY648 GLN649 GLY650 ALA651 PHE652 ARG653 VAL654 TRP655 ASP656 SER657 VAL658 LEU659 SER660 GLU661 GLU662 ALA663 VAL664 LEU665 ALA666 PHE667 GLU668 TYR669 GLY670 TYR671 ALA672 THR673 ALA674 GLU675 PRO676 ARG677 THR678 LEU679 THR680 ILE681 TRP682 GLU683 ALA684 GLN685 PHE686 GLY687 ASP688 PHE689 ALA690 ASN691 GLY692 ALA693 GLN694 VAL695 VAL696 ILE697 ASP698 GLN699 PHE700 ILE701 SER702 SER703 GLY704 GLU705 GLN706 LYS707 TRP708 GLY709 ARG710 MET711 CYS712 GLY713 LEU714 VAL715 MET716 LEU717 LEU718 PRO719 HIS720 GLY721 TYR722 GLU723 GLY724 GLN725 GLY726 PRO727 GLU728 HIS729 SER730 SER731 ALA732 ARG733 LEU734 GLU735 ARG736 TYR737 LEU738 GLN739 LEU740 CYS741 ALA742 GLU743 GLN744 ASN745 MET746 GLN747 VAL748 CYS749 VAL750 PRO751 SER752 THR753 PRO754 ALA755 GLN756 VAL757 TYR758 HIS759 MET760 LEU761 ARG762 ARG763 GLN764 ALA765 LEU766 ARG767 GLY768 MET769 ARG770 ARG771 PRO772 LEU773 VAL774 VAL775 MET776 SER777 PRO778 LYS779 SER780 LEU781 LEU782 ARG783 HIS784 PRO785 LEU786 ALA787 VAL788 SER789 SER790 LEU791 GLU792 GLU793 LEU794 ALA795 ASN796 GLY797 THR798 PHE799 LEU800 PRO801 ALA802 ILE803 GLY804 GLU805 ILE806 ASP807 GLU808 LEU809 ASP810 PRO811 LYS812 GLY813 VAL814 LYS815 ARG816 VAL817 VAL818 MET819 CYS820 SER821 GLY822 LYS823 VAL824 TYR825 TYR826 ASP827 LEU828 LEU829 GLU830 GLN831 ARG832 ARG833 LYS834 ASN835 ASN836 GLN837 HIS838 ASP839 VAL840 ALA841 ILE842 VAL843 ARG844 ILE845 GLU846 GLN847 LEU848 TYR849 PRO850 PHE851 PRO852 HIS853 LYS854 ALA855 MET856 GLN857 GLU858 VAL859 LEU860 GLN861 GLN862 PHE863 ALA864 HIS865 VAL866 LYS867 ASP868 PHE869 VAL870 TRP871 CYS872 GLN873 GLU874 GLU875 PRO876 LEU877 ASN878 GLN879 GLY880 ALA881 TRP882 TYR883 CYS884 SER885 GLN886 HIS887 HIS888 PHE889 ARG890 GLU891 VAL892 ILE893 PRO894 PHE895 GLY896 ALA897 SER898 LEU899 ARG900 TYR901 ALA902 GLY903 ARG904 PRO905 ALA906 SER907 ALA908 SER909 PRO910 ALA911 VAL912 GLY913 HIS914 MET915 SER916 VAL917 HIS918 GLN919 LYS920 GLN921 GLN922 GLN923 ASP924 LEU925 VAL926 ASN927 ASP928 ALA929 LEU930 ASN931 VAL932 GLU933
Unit 2 THR85 ASN86 VAL87 LYS88 GLN89 VAL90 LYS91 VAL92 LEU93 GLN94 LEU95 ILE96 ASN97 ALA98 TYR99 ARG100 PHE101 ARG102 GLY103 HIS104 GLN105 HIS106 ALA107 ASN108 LEU109 ASP110 PRO111 LEU112 GLY113 LEU114 TRP115 LYS119 VAL120 ALA121 ASP122 LEU123 ASP124 PRO125 SER126 PHE127 HIS128 ASP129 LEU130 THR131 GLU132 ALA133 ASP134 PHE135 GLN136 GLU137 THR138 PHE139 ASN140 VAL141 GLY142 SER143 PHE144 ALA145 SER146 GLY147 LYS148 GLU149 THR150 MET151 LYS152 LEU153 GLY154 GLU155 LEU156 LEU157 GLU158 ALA159 LEU160 LYS161 GLN162 THR163 TYR164 CYS165 GLY166 PRO167 ILE168 GLY169 ALA170 GLU171 TYR172 MET173 HIS174 ILE175 THR176 SER177 THR178 GLU179 GLU180 LYS181 ARG182 TRP183 ILE184 GLN185 GLN186 ARG187 ILE188 GLU189 SER190 GLY191 ARG192 ALA193 THR194 PHE195 ASN196 SER197 GLU198 GLU199 LYS200 LYS201 ARG202 PHE203 LEU204 SER205 GLU206 LEU207 THR208 ALA209 ALA210 GLU211 GLY212 LEU213 GLU214 ARG215 TYR216 LEU217 GLY218 ALA219 LYS220 PHE221 PRO222 ARG226 PHE227 SER228 LEU229 GLU230 GLY231 GLY232 ASP233 ALA234 LEU235 ILE236 PRO237 MET238 LEU239 LYS240 GLU241 MET242 ILE243 ARG244 HIS245 ALA246 GLY247 ASN248 SER249 GLY250 THR251 ARG252 GLU253 VAL254 VAL255 LEU256 GLY257 MET258 ALA259 HIS260 ARG261 GLY262 ARG263 LEU264 ASN265 VAL266 LEU267 VAL268 ASN269 VAL270 LEU271 GLY272 LYS273 LYS274 PRO275 GLN276 ASP277 LEU278 PHE279 ASP280 GLU281 PHE282 ALA283 GLY284 LYS285 HIS286 GLY291 THR292 GLY293 ASP294 VAL295 LYS296 TYR297 HIS298 MET299 GLY300 PHE301 SER302 SER303 ASP304 PHE305 GLN306 THR307 ASP308 GLY309 GLY310 LEU311 VAL312 HIS313 LEU314 ALA315 LEU316 ALA317 PHE318 ASN319 PRO320 SER321 HIS322 LEU323 GLU324 ILE325 VAL326 SER327 PRO328 VAL329 VAL330 ILE331 GLY332 SER333 VAL334 ARG335 ALA336 ARG337 LEU338 ASP339 ARG340 LEU341 ASP342 GLU343 PRO344 SER345 SER346 ASN347 LYS348 VAL349 LEU350 PRO351 ILE352 THR353 ILE354 HIS355 GLY356 ASP357 ALA358 ALA359 VAL360 THR361 GLY362 GLN363 GLY364 VAL365 VAL366 GLN367 GLU368 THR369 LEU370 ASN371 MET372 SER373 LYS374 ALA375 ARG376 GLY377 TYR378 GLU379 VAL380 GLY381 GLY382 THR383 VAL384 ARG385 ILE386 VAL387 ILE388 ASN389 ASN390 GLN391 TYR407 CYS408 THR409 ASP410 ILE411 GLY412 LYS413 MET414 VAL415 GLN416 ALA417 PRO418 ILE419 PHE420 HIS421 VAL422 ASN423 ALA424 ASP425 ASP426 PRO427 GLU428 ALA429 VAL430 ALA431 PHE432 VAL433 THR434 ARG435 LEU436 ALA437 LEU438 ASP439 PHE440 ARG441 ASN442 THR443 PHE444 LYS445 ARG446 ASP447 VAL448 PHE449 ILE450 ASP451 LEU452 VAL453 CYS454 TYR455 ARG456 ARG457 HIS458 TYR474 GLN475 LYS476 ILE477 LYS478 LYS479 HIS480 PRO481 THR482 PRO483 ARG484 LYS485 ILE486 TYR487 ALA488 ASP489 LYS490 LEU491 GLU492 GLN493 GLU494 LYS495 VAL496 ALA497 THR498 LEU499 GLU500 ASP501 ALA502 THR503 GLU504 MET505 VAL506 ASN507 LEU508 TYR509 ARG510 ASP511 ALA512 LEU513 ASP514 ALA515 GLY516 ASP517 CYS518 VAL519 VAL520 ALA521 GLU522 TRP523 ARG524 PRO525 MET526 ASN527 MET528 HIS529 SER530 PHE531 THR532 TRP533 SER534 PRO535 TYR536 LEU537 ASN538 HIS539 GLU540 TRP541 ASP542 GLU543 GLU544 TYR545 PRO546 ASN547 LYS548 VAL549 GLU550 MET551 LYS552 ARG553 LEU554 GLN555 GLU556 LEU557 ALA558 LYS559 ARG560 ILE561 SER562 THR563 VAL564 PRO565 GLU566 ALA567 VAL568 GLU569 MET570 GLN571 SER572 ARG573 VAL574 ALA575 LYS576 ILE577 TYR578 ALA579 ASP580 ARG581 GLN582 ALA583 MET584 ALA585 ALA586 GLY587 GLU588 LYS589 LEU590 PHE591 ASP592 TRP593 GLY594 GLY595 ALA596 GLU597 ASN598 LEU599 ALA600 TYR601 ALA602 THR603 LEU604 VAL605 ASP606 GLU607 GLY608 ILE609 PRO610 VAL611 ARG612 LEU613 SER614 GLY615 GLU616 ASP617 SER618 GLY619 ARG620 GLY621 THR622 PHE623 PHE624 HIS625 ARG626 HIS627 ALA628 VAL629 ILE630 HIS631 ASN632 GLN633 SER634 ASN635 GLY636 SER637 THR638 TYR639 THR640 PRO641 LEU642 GLN643 HIS644 ILE645 HIS646 ASN647 GLY648 GLN649 GLY650 ALA651 PHE652 ARG653 VAL654 TRP655 ASP656 SER657 SER660 GLU661 GLU662 ALA663 VAL664 LEU665 ALA666 PHE667 GLU668 TYR669 GLY670 TYR671 ALA672 THR673 ALA674 GLU675 PRO676 ARG677 THR678 LEU679 THR680 ILE681 TRP682 GLU683 ALA684 GLN685 PHE686 GLY687 ASP688 PHE689 ALA690 ASN691 GLY692 ALA693 GLN694 VAL695 VAL696 ILE697 ASP698 GLN699 PHE700 ILE701 SER702 SER703 GLY704 GLU705 GLN706 LYS707 TRP708 GLY709 ARG710 MET711 CYS712 GLY713 LEU714 VAL715 MET716 LEU717 LEU718 PRO719 HIS720 GLY721 TYR722 GLU723 GLY724 GLN725 GLY726 PRO727 GLU728 HIS729 SER730 SER731 ALA732 ARG733 LEU734 GLU735 ARG736 TYR737 LEU738 GLN739 LEU740 CYS741 ALA742 GLU743 GLN744 ASN745 MET746 GLN747 VAL748 CYS749 VAL750 PRO751 SER752 THR753 PRO754 ALA755 GLN756 VAL757 TYR758 HIS759 MET760 LEU761 ARG762 ARG763 GLN764 ALA765 LEU766 ARG767 GLY768 MET769 ARG770 ARG771 PRO772 LEU773 VAL774 VAL775 MET776 SER777 PRO778 LYS779 SER780 LEU781 LEU782 ARG783 HIS784 PRO785 LEU786 ALA787 VAL788 SER789 SER790 LEU791 GLU792 GLU793 LEU794 ALA795 ASN796 GLY797 THR798 PHE799 LEU800 PRO801 ALA802 ILE803 GLY804 GLU805 ILE806 ASP807 GLU808 LEU809 ASP810 PRO811 LYS812 GLY813 VAL814 LYS815 ARG816 VAL817 VAL818 MET819 CYS820 SER821 GLY822 LYS823 VAL824 TYR825 TYR826 ASP827 LEU828 LEU829 GLU830 GLN831 ARG832 ARG833 LYS834 ASN835 ASN836 GLN837 HIS838 ASP839 VAL840 ALA841 ILE842 VAL843 ARG844 ILE845 GLU846 GLN847 LEU848 TYR849 PRO850 PHE851 PRO852 HIS853 LYS854 ALA855 MET856 GLN857 GLU858 VAL859 LEU860 GLN861 GLN862 PHE863 ALA864 HIS865 VAL866 LYS867 ASP868 PHE869 VAL870 TRP871 CYS872 GLN873 GLU874 GLU875 PRO876 LEU877 ASN878 GLN879 GLY880 ALA881 TRP882 TYR883 CYS884 SER885 GLN886 HIS887 HIS888 PHE889 ARG890 GLU891 VAL892 ILE893 PRO894 PHE895 GLY896 ALA897 SER898 LEU899 ARG900 TYR901 ALA902 GLY903 ARG904 PRO905 ALA906 SER907 ALA908 SER909 PRO910 ALA911 VAL912 GLY913 TYR914 MET915 SER916 VAL917 HIS918 GLN919 LYS920 GLN921 GLN922 GLN923 ASP924 LEU925 VAL926 ASN927 ASP928 ALA929 LEU930 ASN931 VAL932 GLU933
Ligands
Unit 3 AMP1934
Unit 4 AMP1934
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany