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Title | X-RAY STRUCTURE OF MUTANT 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, DXR, RV2870C, FROM MYCOBACTERIUM TUBERCULOSIS, IN COMPLEX WITH NADPH | |
Keywords | OXIDOREDUCTASE, DOXP/MEP PATHWAY, ISOPRENE BIOSYNTHESIS, 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, NADP, RV2870C, METAL-BINDING | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2JD0 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE | A | 379 | 2781 | 0 |
2 | Protein | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE | B | 379 | 2781 | 0 |
3 | Ligand | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE | A | 3 | 0 | 58 |
4 | Ligand | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE | B | 1 | 0 | 5 |
5 | Water | 263 | 0 | 263 | ||
total | 1025 | 5562 | 326 |
Unit 1 | GLY11 ARG12 LEU13 ARG14 VAL15 VAL16 VAL17 LEU18 GLY19 SER20 THR21 GLY22 SER23 ILE24 GLY25 THR26 GLN27 ALA28 LEU29 GLN30 VAL31 ILE32 ALA33 ASP34 ASN35 PRO36 ASP37 ARG38 PHE39 GLU40 VAL41 VAL42 GLY43 LEU44 ALA45 ALA46 GLY47 GLY48 ALA49 HIS50 LEU51 ASP52 THR53 LEU54 LEU55 ARG56 GLN57 ARG58 ALA59 GLN60 THR61 GLY62 VAL63 THR64 ASN65 ILE66 ALA67 VAL68 ALA69 ASP70 GLU71 HIS72 ALA73 ALA74 GLN75 ARG76 VAL77 GLY78 ASP79 ILE80 PRO81 TYR82 HIS83 GLY84 SER85 ASP86 ALA87 ALA88 THR89 ARG90 LEU91 VAL92 GLU93 GLN94 THR95 GLU96 ALA97 ASP98 VAL99 VAL100 LEU101 ASN102 ALA103 LEU104 VAL105 GLY106 ALA107 LEU108 GLY109 LEU110 ARG111 PRO112 THR113 LEU114 ALA115 ALA116 LEU117 LYS118 THR119 GLY120 ALA121 ARG122 LEU123 ALA124 LEU125 ALA126 ASN127 LYS128 GLU129 SER130 LEU131 VAL132 ALA133 GLY134 GLY135 SER136 LEU137 VAL138 LEU139 ARG140 ALA141 ALA142 ARG143 PRO144 GLY145 GLN146 ILE147 VAL148 PRO149 VAL150 ASN151 SER152 GLU153 HIS154 SER155 ALA156 LEU157 ALA158 GLN159 CYS160 LEU161 ARG162 GLY163 GLY164 THR165 PRO166 ASP167 GLU168 VAL169 ALA170 LYS171 LEU172 VAL173 LEU174 THR175 ALA176 SER177 GLY178 GLY179 PRO180 PHE181 ARG182 GLY183 TRP184 SER185 ALA186 ALA187 ASP188 LEU189 GLU190 HIS191 VAL192 THR193 PRO194 GLU195 GLN196 ALA197 GLY198 ALA199 HIS200 PRO201 THR202 TRP203 SER204 MET205 GLY206 PRO207 MET208 ASN209 THR210 LEU211 ASN212 SER213 ALA214 SER215 LEU216 VAL217 ASN218 LYS219 GLY220 LEU221 GLN222 VAL223 ILE224 GLU225 THR226 HIS227 LEU228 LEU229 PHE230 GLY231 ILE232 PRO233 TYR234 ASP235 ARG236 ILE237 ASP238 VAL239 VAL240 VAL241 HIS242 PRO243 GLN244 SER245 ILE246 ILE247 HIS248 SER249 MET250 VAL251 THR252 PHE253 ILE254 ASP255 GLY256 SER257 THR258 ILE259 ALA260 GLN261 ALA262 SER263 PRO264 PRO265 ASP266 MET267 LYS268 LEU269 PRO270 ILE271 SER272 LEU273 ALA274 LEU275 GLY276 TRP277 PRO278 ARG279 ARG280 VAL281 SER282 GLY283 ALA284 ALA285 ALA286 ALA287 CYS288 ASP289 PHE290 HIS291 THR292 ALA293 SER294 SER295 TRP296 GLU297 PHE298 GLU299 PRO300 LEU301 ASP302 THR303 ASP304 VAL305 PHE306 PRO307 ALA308 VAL309 GLU310 LEU311 ALA312 ARG313 GLN314 ALA315 GLY316 VAL317 ALA318 GLY319 GLY320 CYS321 MET322 THR323 ALA324 VAL325 TYR326 ASN327 ALA328 ALA329 ASN330 GLU331 GLU332 ALA333 ALA334 ALA335 ALA336 PHE337 LEU338 ALA339 GLY340 ARG341 ILE342 GLY343 PHE344 PRO345 ALA346 ILE347 VAL348 GLY349 ILE350 ILE351 ALA352 ASP353 VAL354 LEU355 HIS356 ALA357 ALA358 ASP359 GLN360 TRP361 ALA362 VAL363 GLU364 PRO365 ALA366 THR367 VAL368 ASP369 ASP370 VAL371 LEU372 ASP373 ALA374 GLN375 ARG376 TRP377 ALA378 ARG379 GLU380 ARG381 ALA382 GLN383 ARG384 ALA385 VAL386 SER387 GLY388 MET389 |
Unit 2 | GLY11 ARG12 LEU13 ARG14 VAL15 VAL16 VAL17 LEU18 GLY19 SER20 THR21 GLY22 SER23 ILE24 GLY25 THR26 GLN27 ALA28 LEU29 GLN30 VAL31 ILE32 ALA33 ASP34 ASN35 PRO36 ASP37 ARG38 PHE39 GLU40 VAL41 VAL42 GLY43 LEU44 ALA45 ALA46 GLY47 GLY48 ALA49 HIS50 LEU51 ASP52 THR53 LEU54 LEU55 ARG56 GLN57 ARG58 ALA59 GLN60 THR61 GLY62 VAL63 THR64 ASN65 ILE66 ALA67 VAL68 ALA69 ASP70 GLU71 HIS72 ALA73 ALA74 GLN75 ARG76 VAL77 GLY78 ASP79 ILE80 PRO81 TYR82 HIS83 GLY84 SER85 ASP86 ALA87 ALA88 THR89 ARG90 LEU91 VAL92 GLU93 GLN94 THR95 GLU96 ALA97 ASP98 VAL99 VAL100 LEU101 ASN102 ALA103 LEU104 VAL105 GLY106 ALA107 LEU108 GLY109 LEU110 ARG111 PRO112 THR113 LEU114 ALA115 ALA116 LEU117 LYS118 THR119 GLY120 ALA121 ARG122 LEU123 ALA124 LEU125 ALA126 ASN127 LYS128 GLU129 SER130 LEU131 VAL132 ALA133 GLY134 GLY135 SER136 LEU137 VAL138 LEU139 ARG140 ALA141 ALA142 ARG143 PRO144 GLY145 GLN146 ILE147 VAL148 PRO149 VAL150 ASN151 SER152 GLU153 HIS154 SER155 ALA156 LEU157 ALA158 GLN159 CYS160 LEU161 ARG162 GLY163 GLY164 THR165 PRO166 ASP167 GLU168 VAL169 ALA170 LYS171 LEU172 VAL173 LEU174 THR175 ALA176 SER177 GLY178 GLY179 PRO180 PHE181 ARG182 GLY183 TRP184 SER185 ALA186 ALA187 ASP188 LEU189 GLU190 HIS191 VAL192 THR193 PRO194 GLU195 GLN196 ALA197 GLY198 ALA199 HIS200 PRO201 THR202 TRP203 SER204 MET205 GLY206 PRO207 MET208 ASN209 THR210 LEU211 ASN212 SER213 ALA214 SER215 LEU216 VAL217 ASN218 LYS219 GLY220 LEU221 GLN222 VAL223 ILE224 GLU225 THR226 HIS227 LEU228 LEU229 PHE230 GLY231 ILE232 PRO233 TYR234 ASP235 ARG236 ILE237 ASP238 VAL239 VAL240 VAL241 HIS242 PRO243 GLN244 SER245 ILE246 ILE247 HIS248 SER249 MET250 VAL251 THR252 PHE253 ILE254 ASP255 GLY256 SER257 THR258 ILE259 ALA260 GLN261 ALA262 SER263 PRO264 PRO265 ASP266 MET267 LYS268 LEU269 PRO270 ILE271 SER272 LEU273 ALA274 LEU275 GLY276 TRP277 PRO278 ARG279 ARG280 VAL281 SER282 GLY283 ALA284 ALA285 ALA286 ALA287 CYS288 ASP289 PHE290 HIS291 THR292 ALA293 SER294 SER295 TRP296 GLU297 PHE298 GLU299 PRO300 LEU301 ASP302 THR303 ASP304 VAL305 PHE306 PRO307 ALA308 VAL309 GLU310 LEU311 ALA312 ARG313 GLN314 ALA315 GLY316 VAL317 ALA318 GLY319 GLY320 CYS321 MET322 THR323 ALA324 VAL325 TYR326 ASN327 ALA328 ALA329 ASN330 GLU331 GLU332 ALA333 ALA334 ALA335 ALA336 PHE337 LEU338 ALA339 GLY340 ARG341 ILE342 GLY343 PHE344 PRO345 ALA346 ILE347 VAL348 GLY349 ILE350 ILE351 ALA352 ASP353 VAL354 LEU355 HIS356 ALA357 ALA358 ASP359 GLN360 TRP361 ALA362 VAL363 GLU364 PRO365 ALA366 THR367 VAL368 ASP369 ASP370 VAL371 LEU372 ASP373 ALA374 GLN375 ARG376 TRP377 ALA378 ARG379 GLU380 ARG381 ALA382 GLN383 ARG384 ALA385 VAL386 SER387 GLY388 MET389 |
Unit 3 | NDP1390 SO41391 SO41392 |
Unit 4 | SO41390 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |