2J9P - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS PBP4A, AND ITS CO A PEPTIDOGLYCAN MIMETIC PEPTIDE.
• Keywords: D-ALA-D-ALA- CARBOXYPEPTIDASE, PEPTIDOGLYCAN SYNTHESIS, PENI BINDING PROTEIN, PEPTIDOGLYCAN, CELL DIVISION, BACILLUS SUB CELL WALL, HYDROLASE, CELL SHAPE, CELL CYCLE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2J9P	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC	A	458	3461	0
2	Protein	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC	B	458	3461	0
3	Ligand	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC	A	2	0	22
4	Ligand	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACC	B	2	0	22
total				920	6922	44

Proteins

Unit 1

ASP 5 ALA 6 LEU 7 SER 8 GLY 9 GLN 10 ILE 11 ASP 12 LYS 13 ILE 14 LEU 15 ALA 16 ASP 17 HIS 18 PRO 19 ALA 20 LEU 21 GLU 22 GLY 23 ALA 24 MET 25 ALA 26 GLY 27 ILE 28 THR 29 VAL 30 ARG 31 SER 32 ALA 33 GLU 34 THR 35 GLY 36 ALA 37 VAL 38 LEU 39 TYR 40 GLU 41 HIS 42 SER 43 GLY 44 ASP 45 THR 46 ARG 47 MET 48 ARG 49 PRO 50 ALA 51 SER 52 SER 53 LEU 54 LYS 55 LEU 56 LEU 57 THR 58 ALA 59 ALA 60 ALA 61 ALA 62 LEU 63 SER 64 VAL 65 LEU 66 GLY 67 GLU 68 ASN 69 TYR 70 SER 71 PHE 72 THR 73 THR 74 GLU 75 VAL 76 ARG 77 THR 78 ASP 79 GLY 80 THR 81 LEU 82 LYS 83 GLY 84 LYS 85 LYS 86 LEU 87 ASN 88 GLY 89 ASN 90 LEU 91 TYR 92 LEU 93 LYS 94 GLY 95 LYS 96 GLY 97 ASP 98 PRO 99 THR 100 LEU 101 LEU 102 PRO 103 SER 104 ASP 105 PHE 106 ASP 107 LYS 108 MET 109 ALA 110 GLU 111 ILE 112 LEU 113 LYS 114 HIS 115 SER 116 GLY 117 VAL 118 LYS 119 VAL 120 ILE 121 LYS 122 GLY 123 ASN 124 LEU 125 ILE 126 GLY 127 ASP 128 ASP 129 THR 130 TRP 131 HIS 132 ASP 133 ASP 134 MET 135 ARG 136 LEU 137 SER 138 PRO 139 ASP 140 MET 141 PRO 142 TRP 143 SER 144 ASP 145 GLU 146 TYR 147 THR 148 TYR 149 TYR 150 GLY 151 ALA 152 PRO 153 ILE 154 SER 155 ALA 156 LEU 157 THR 158 ALA 159 SER 160 PRO 161 ASN 162 GLU 163 ASP 164 TYR 165 ASP 166 ALA 167 GLY 168 THR 169 VAL 170 ILE 171 VAL 172 GLU 173 VAL 174 THR 175 PRO 176 ASN 177 GLN 178 LYS 179 GLU 180 GLY 181 GLU 182 GLU 183 PRO 184 ALA 185 VAL 186 SER 187 VAL 188 SER 189 PRO 190 LYS 191 THR 192 ASP 193 TYR 194 ILE 195 THR 196 ILE 197 LYS 198 ASN 199 ASP 200 ALA 201 LYS 202 THR 203 THR 204 ALA 205 ALA 206 GLY 207 SER 208 GLU 209 LYS 210 ASP 211 LEU 212 THR 213 ILE 214 GLU 215 ARG 216 GLU 217 HIS 218 GLY 219 THR 220 ASN 221 THR 222 ILE 223 THR 224 ILE 225 GLU 226 GLY 227 SER 228 VAL 229 PRO 230 VAL 231 ASP 232 ALA 233 ASN 234 LYS 235 THR 236 LYS 237 GLU 238 TRP 239 ILE 240 SER 241 VAL 242 TRP 243 GLU 244 PRO 245 ALA 246 GLY 247 TYR 248 ALA 249 LEU 250 ASP 251 LEU 252 PHE 253 LYS 254 GLN 255 SER 256 LEU 257 LYS 258 LYS 259 GLN 260 GLY 261 ILE 262 THR 263 VAL 264 LYS 265 GLY 266 ASP 267 ILE 268 LYS 269 THR 270 GLY 271 GLU 272 ALA 273 PRO 274 SER 275 SER 276 SER 277 ASP 278 VAL 279 LEU 280 LEU 281 SER 282 HIS 283 ARG 284 SER 285 MET 286 PRO 287 LEU 288 SER 289 LYS 290 LEU 291 PHE 292 VAL 293 PRO 294 PHE 295 MET 296 LYS 297 LEU 298 SER 299 ASN 300 ASN 301 GLY 302 HIS 303 ALA 304 GLU 305 VAL 306 LEU 307 VAL 308 LYS 309 GLU 310 MET 311 GLY 312 LYS 313 VAL 314 LYS 315 LYS 316 GLY 317 GLU 318 GLY 319 SER 320 TRP 321 GLU 322 LYS 323 GLY 324 LEU 325 GLU 326 VAL 327 LEU 328 ASN 329 SER 330 THR 331 LEU 332 PRO 333 GLU 334 PHE 335 GLY 336 VAL 337 ASP 338 SER 339 LYS 340 SER 341 LEU 342 VAL 343 LEU 344 ARG 345 ASP 346 GLY 347 SER 348 GLY 349 ILE 350 SER 351 HIS 352 ILE 353 ASP 354 ALA 355 VAL 356 SER 357 SER 358 ASP 359 GLN 360 LEU 361 SER 362 GLN 363 LEU 364 LEU 365 TYR 366 ASP 367 ILE 368 GLN 369 ASP 370 GLN 371 SER 372 TRP 373 PHE 374 SER 375 ALA 376 TYR 377 LEU 378 ASN 379 SER 380 LEU 381 PRO 382 VAL 383 ALA 384 GLY 385 ASN 386 PRO 387 ASP 388 ARG 389 MET 390 VAL 391 GLY 392 GLY 393 THR 394 LEU 395 ARG 396 ASN 397 ARG 398 MET 399 LYS 400 GLY 401 THR 402 PRO 403 ALA 404 GLN 405 GLY 406 LYS 407 VAL 408 ARG 409 ALA 410 LYS 411 THR 412 GLY 413 SER 414 LEU 415 SER 416 THR 417 VAL 418 SER 419 SER 420 LEU 421 SER 422 GLY 423 TYR 424 ALA 425 GLU 426 THR 427 LYS 428 SER 429 GLY 430 LYS 431 LYS 432 LEU 433 VAL 434 PHE 435 SER 436 ILE 437 LEU 438 LEU 439 ASN 440 GLY 441 LEU 442 ILE 443 ASP 444 GLU 445 GLU 446 ASP 447 GLY 448 LYS 449 ASP 450 ILE 451 GLU 452 ASP 453 GLN 454 ILE 455 ALA 456 VAL 457 ILE 458 LEU 459 ALA 460 ASN 461 GLN 462

Unit 2

ASP 5 ALA 6 LEU 7 SER 8 GLY 9 GLN 10 ILE 11 ASP 12 LYS 13 ILE 14 LEU 15 ALA 16 ASP 17 HIS 18 PRO 19 ALA 20 LEU 21 GLU 22 GLY 23 ALA 24 MET 25 ALA 26 GLY 27 ILE 28 THR 29 VAL 30 ARG 31 SER 32 ALA 33 GLU 34 THR 35 GLY 36 ALA 37 VAL 38 LEU 39 TYR 40 GLU 41 HIS 42 SER 43 GLY 44 ASP 45 THR 46 ARG 47 MET 48 ARG 49 PRO 50 ALA 51 SER 52 SER 53 LEU 54 LYS 55 LEU 56 LEU 57 THR 58 ALA 59 ALA 60 ALA 61 ALA 62 LEU 63 SER 64 VAL 65 LEU 66 GLY 67 GLU 68 ASN 69 TYR 70 SER 71 PHE 72 THR 73 THR 74 GLU 75 VAL 76 ARG 77 THR 78 ASP 79 GLY 80 THR 81 LEU 82 LYS 83 GLY 84 LYS 85 LYS 86 LEU 87 ASN 88 GLY 89 ASN 90 LEU 91 TYR 92 LEU 93 LYS 94 GLY 95 LYS 96 GLY 97 ASP 98 PRO 99 THR 100 LEU 101 LEU 102 PRO 103 SER 104 ASP 105 PHE 106 ASP 107 LYS 108 MET 109 ALA 110 GLU 111 ILE 112 LEU 113 LYS 114 HIS 115 SER 116 GLY 117 VAL 118 LYS 119 VAL 120 ILE 121 LYS 122 GLY 123 ASN 124 LEU 125 ILE 126 GLY 127 ASP 128 ASP 129 THR 130 TRP 131 HIS 132 ASP 133 ASP 134 MET 135 ARG 136 LEU 137 SER 138 PRO 139 ASP 140 MET 141 PRO 142 TRP 143 SER 144 ASP 145 GLU 146 TYR 147 THR 148 TYR 149 TYR 150 GLY 151 ALA 152 PRO 153 ILE 154 SER 155 ALA 156 LEU 157 THR 158 ALA 159 SER 160 PRO 161 ASN 162 GLU 163 ASP 164 TYR 165 ASP 166 ALA 167 GLY 168 THR 169 VAL 170 ILE 171 VAL 172 GLU 173 VAL 174 THR 175 PRO 176 ASN 177 GLN 178 LYS 179 GLU 180 GLY 181 GLU 182 GLU 183 PRO 184 ALA 185 VAL 186 SER 187 VAL 188 SER 189 PRO 190 LYS 191 THR 192 ASP 193 TYR 194 ILE 195 THR 196 ILE 197 LYS 198 ASN 199 ASP 200 ALA 201 LYS 202 THR 203 THR 204 ALA 205 ALA 206 GLY 207 SER 208 GLU 209 LYS 210 ASP 211 LEU 212 THR 213 ILE 214 GLU 215 ARG 216 GLU 217 HIS 218 GLY 219 THR 220 ASN 221 THR 222 ILE 223 THR 224 ILE 225 GLU 226 GLY 227 SER 228 VAL 229 PRO 230 VAL 231 ASP 232 ALA 233 ASN 234 LYS 235 THR 236 LYS 237 GLU 238 TRP 239 ILE 240 SER 241 VAL 242 TRP 243 GLU 244 PRO 245 ALA 246 GLY 247 TYR 248 ALA 249 LEU 250 ASP 251 LEU 252 PHE 253 LYS 254 GLN 255 SER 256 LEU 257 LYS 258 LYS 259 GLN 260 GLY 261 ILE 262 THR 263 VAL 264 LYS 265 GLY 266 ASP 267 ILE 268 LYS 269 THR 270 GLY 271 GLU 272 ALA 273 PRO 274 SER 275 SER 276 SER 277 ASP 278 VAL 279 LEU 280 LEU 281 SER 282 HIS 283 ARG 284 SER 285 MET 286 PRO 287 LEU 288 SER 289 LYS 290 LEU 291 PHE 292 VAL 293 PRO 294 PHE 295 MET 296 LYS 297 LEU 298 SER 299 ASN 300 ASN 301 GLY 302 HIS 303 ALA 304 GLU 305 VAL 306 LEU 307 VAL 308 LYS 309 GLU 310 MET 311 GLY 312 LYS 313 VAL 314 LYS 315 LYS 316 GLY 317 GLU 318 GLY 319 SER 320 TRP 321 GLU 322 LYS 323 GLY 324 LEU 325 GLU 326 VAL 327 LEU 328 ASN 329 SER 330 THR 331 LEU 332 PRO 333 GLU 334 PHE 335 GLY 336 VAL 337 ASP 338 SER 339 LYS 340 SER 341 LEU 342 VAL 343 LEU 344 ARG 345 ASP 346 GLY 347 SER 348 GLY 349 ILE 350 SER 351 HIS 352 ILE 353 ASP 354 ALA 355 VAL 356 SER 357 SER 358 ASP 359 GLN 360 LEU 361 SER 362 GLN 363 LEU 364 LEU 365 TYR 366 ASP 367 ILE 368 GLN 369 ASP 370 GLN 371 SER 372 TRP 373 PHE 374 SER 375 ALA 376 TYR 377 LEU 378 ASN 379 SER 380 LEU 381 PRO 382 VAL 383 ALA 384 GLY 385 ASN 386 PRO 387 ASP 388 ARG 389 MET 390 VAL 391 GLY 392 GLY 393 THR 394 LEU 395 ARG 396 ASN 397 ARG 398 MET 399 LYS 400 GLY 401 THR 402 PRO 403 ALA 404 GLN 405 GLY 406 LYS 407 VAL 408 ARG 409 ALA 410 LYS 411 THR 412 GLY 413 SER 414 LEU 415 SER 416 THR 417 VAL 418 SER 419 SER 420 LEU 421 SER 422 GLY 423 TYR 424 ALA 425 GLU 426 THR 427 LYS 428 SER 429 GLY 430 LYS 431 LYS 432 LEU 433 VAL 434 PHE 435 SER 436 ILE 437 LEU 438 LEU 439 ASN 440 GLY 441 LEU 442 ILE 443 ASP 444 GLU 445 GLU 446 ASP 447 GLY 448 LYS 449 ASP 450 ILE 451 GLU 452 ASP 453 GLN 454 ILE 455 ALA 456 VAL 457 ILE 458 LEU 459 ALA 460 ASN 461 GLN 462

Ligands

Unit 3	REZ 500 DAL 501
Unit 4	REZ 500 DAL 501