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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE ARF1:ARHGAP21-ARFBD COMPLEX
Keywords ARF, ARF1, ARFBD, ARHGAP21, MYRISTATE, TRANSPORT, NUCLEOTIDE-BINDING, RHOGAP PROTEIN, HYDROLASE, PROTEIN TRANSPORT, ACTIN ORGANIZATION, SMALL GTP-BINDING PROTEIN, GOLGI APPARATUS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2J59     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ADP-RIBOSYLATION FACTOR 1  A 165 1322 0
2  Protein   ADP-RIBOSYLATION FACTOR 1  B 165 1322 0
3  Protein   ADP-RIBOSYLATION FACTOR 1  C 165 1322 0
4  Protein   ADP-RIBOSYLATION FACTOR 1  D 165 1322 0
5  Protein   ADP-RIBOSYLATION FACTOR 1  E 165 1322 0
6  Protein   ADP-RIBOSYLATION FACTOR 1  F 165 1322 0
7  Protein   RHO-GTPASE ACTIVATING PROTEIN 10  M 113 939 0
8  Protein   RHO-GTPASE ACTIVATING PROTEIN 10  N 114 948 0
9  Protein   RHO-GTPASE ACTIVATING PROTEIN 10  O 111 923 0
10  Protein   RHO-GTPASE ACTIVATING PROTEIN 10  P 114 948 0
11  Protein   RHO-GTPASE ACTIVATING PROTEIN 10  Q 114 948 0
12  Protein   RHO-GTPASE ACTIVATING PROTEIN 10  R 113 939 0
13  Ligand   ADP-RIBOSYLATION FACTOR 1  A 3 0 39
14  Ligand   ADP-RIBOSYLATION FACTOR 1  B 3 0 39
15  Ligand   ADP-RIBOSYLATION FACTOR 1  C 3 0 37
16  Ligand   ADP-RIBOSYLATION FACTOR 1  D 2 0 33
17  Ligand   ADP-RIBOSYLATION FACTOR 1  E 3 0 37
18  Ligand   ADP-RIBOSYLATION FACTOR 1  F 3 0 39
19  Ligand   RHO-GTPASE ACTIVATING PROTEIN 10  M 1 0 5
20  Ligand   RHO-GTPASE ACTIVATING PROTEIN 10  N 1 0 5
21  Ligand   RHO-GTPASE ACTIVATING PROTEIN 10  O 2 0 9
22  Ligand   RHO-GTPASE ACTIVATING PROTEIN 10  P 1 0 5
23  Ligand   RHO-GTPASE ACTIVATING PROTEIN 10  Q 1 0 5
24  Ligand   RHO-GTPASE ACTIVATING PROTEIN 10  R 1 0 5
25 Water     1656 0 1656
total       3349 13577 1914
Proteins
Unit 1 GLY16 SER17 MET18 ARG19 ILE20 LEU21 MET22 VAL23 GLY24 LEU25 ASP26 ALA27 ALA28 GLY29 LYS30 THR31 THR32 ILE33 LEU34 TYR35 LYS36 LEU37 LYS38 LEU39 GLY40 GLU41 ILE42 VAL43 THR44 THR45 ILE46 PRO47 THR48 ILE49 GLY50 PHE51 ASN52 VAL53 GLU54 THR55 VAL56 GLU57 TYR58 LYS59 ASN60 ILE61 SER62 PHE63 THR64 VAL65 TRP66 ASP67 VAL68 GLY69 GLY70 LEU71 ASP72 LYS73 ILE74 ARG75 PRO76 LEU77 TRP78 ARG79 HIS80 TYR81 PHE82 GLN83 ASN84 THR85 GLN86 GLY87 LEU88 ILE89 PHE90 VAL91 VAL92 ASP93 SER94 ASN95 ASP96 ARG97 GLU98 ARG99 VAL100 ASN101 GLU102 ALA103 ARG104 GLU105 GLU106 LEU107 MET108 ARG109 MET110 LEU111 ALA112 GLU113 ASP114 GLU115 LEU116 ARG117 ASP118 ALA119 VAL120 LEU121 LEU122 VAL123 PHE124 ALA125 ASN126 LYS127 GLN128 ASP129 LEU130 PRO131 ASN132 ALA133 MET134 ASN135 ALA136 ALA137 GLU138 ILE139 THR140 ASP141 LYS142 LEU143 GLY144 LEU145 HIS146 SER147 LEU148 ARG149 HIS150 ARG151 ASN152 TRP153 TYR154 ILE155 GLN156 ALA157 THR158 CYS159 ALA160 THR161 SER162 GLY163 ASP164 GLY165 LEU166 TYR167 GLU168 GLY169 LEU170 ASP171 TRP172 LEU173 SER174 ASN175 GLN176 LEU177 ARG178 ASN179 GLN180
Unit 2 GLY16 SER17 MET18 ARG19 ILE20 LEU21 MET22 VAL23 GLY24 LEU25 ASP26 ALA27 ALA28 GLY29 LYS30 THR31 THR32 ILE33 LEU34 TYR35 LYS36 LEU37 LYS38 LEU39 GLY40 GLU41 ILE42 VAL43 THR44 THR45 ILE46 PRO47 THR48 ILE49 GLY50 PHE51 ASN52 VAL53 GLU54 THR55 VAL56 GLU57 TYR58 LYS59 ASN60 ILE61 SER62 PHE63 THR64 VAL65 TRP66 ASP67 VAL68 GLY69 GLY70 LEU71 ASP72 LYS73 ILE74 ARG75 PRO76 LEU77 TRP78 ARG79 HIS80 TYR81 PHE82 GLN83 ASN84 THR85 GLN86 GLY87 LEU88 ILE89 PHE90 VAL91 VAL92 ASP93 SER94 ASN95 ASP96 ARG97 GLU98 ARG99 VAL100 ASN101 GLU102 ALA103 ARG104 GLU105 GLU106 LEU107 MET108 ARG109 MET110 LEU111 ALA112 GLU113 ASP114 GLU115 LEU116 ARG117 ASP118 ALA119 VAL120 LEU121 LEU122 VAL123 PHE124 ALA125 ASN126 LYS127 GLN128 ASP129 LEU130 PRO131 ASN132 ALA133 MET134 ASN135 ALA136 ALA137 GLU138 ILE139 THR140 ASP141 LYS142 LEU143 GLY144 LEU145 HIS146 SER147 LEU148 ARG149 HIS150 ARG151 ASN152 TRP153 TYR154 ILE155 GLN156 ALA157 THR158 CYS159 ALA160 THR161 SER162 GLY163 ASP164 GLY165 LEU166 TYR167 GLU168 GLY169 LEU170 ASP171 TRP172 LEU173 SER174 ASN175 GLN176 LEU177 ARG178 ASN179 GLN180
Unit 3 GLY16 SER17 MET18 ARG19 ILE20 LEU21 MET22 VAL23 GLY24 LEU25 ASP26 ALA27 ALA28 GLY29 LYS30 THR31 THR32 ILE33 LEU34 TYR35 LYS36 LEU37 LYS38 LEU39 GLY40 GLU41 ILE42 VAL43 THR44 THR45 ILE46 PRO47 THR48 ILE49 GLY50 PHE51 ASN52 VAL53 GLU54 THR55 VAL56 GLU57 TYR58 LYS59 ASN60 ILE61 SER62 PHE63 THR64 VAL65 TRP66 ASP67 VAL68 GLY69 GLY70 LEU71 ASP72 LYS73 ILE74 ARG75 PRO76 LEU77 TRP78 ARG79 HIS80 TYR81 PHE82 GLN83 ASN84 THR85 GLN86 GLY87 LEU88 ILE89 PHE90 VAL91 VAL92 ASP93 SER94 ASN95 ASP96 ARG97 GLU98 ARG99 VAL100 ASN101 GLU102 ALA103 ARG104 GLU105 GLU106 LEU107 MET108 ARG109 MET110 LEU111 ALA112 GLU113 ASP114 GLU115 LEU116 ARG117 ASP118 ALA119 VAL120 LEU121 LEU122 VAL123 PHE124 ALA125 ASN126 LYS127 GLN128 ASP129 LEU130 PRO131 ASN132 ALA133 MET134 ASN135 ALA136 ALA137 GLU138 ILE139 THR140 ASP141 LYS142 LEU143 GLY144 LEU145 HIS146 SER147 LEU148 ARG149 HIS150 ARG151 ASN152 TRP153 TYR154 ILE155 GLN156 ALA157 THR158 CYS159 ALA160 THR161 SER162 GLY163 ASP164 GLY165 LEU166 TYR167 GLU168 GLY169 LEU170 ASP171 TRP172 LEU173 SER174 ASN175 GLN176 LEU177 ARG178 ASN179 GLN180
Unit 4 GLY16 SER17 MET18 ARG19 ILE20 LEU21 MET22 VAL23 GLY24 LEU25 ASP26 ALA27 ALA28 GLY29 LYS30 THR31 THR32 ILE33 LEU34 TYR35 LYS36 LEU37 LYS38 LEU39 GLY40 GLU41 ILE42 VAL43 THR44 THR45 ILE46 PRO47 THR48 ILE49 GLY50 PHE51 ASN52 VAL53 GLU54 THR55 VAL56 GLU57 TYR58 LYS59 ASN60 ILE61 SER62 PHE63 THR64 VAL65 TRP66 ASP67 VAL68 GLY69 GLY70 LEU71 ASP72 LYS73 ILE74 ARG75 PRO76 LEU77 TRP78 ARG79 HIS80 TYR81 PHE82 GLN83 ASN84 THR85 GLN86 GLY87 LEU88 ILE89 PHE90 VAL91 VAL92 ASP93 SER94 ASN95 ASP96 ARG97 GLU98 ARG99 VAL100 ASN101 GLU102 ALA103 ARG104 GLU105 GLU106 LEU107 MET108 ARG109 MET110 LEU111 ALA112 GLU113 ASP114 GLU115 LEU116 ARG117 ASP118 ALA119 VAL120 LEU121 LEU122 VAL123 PHE124 ALA125 ASN126 LYS127 GLN128 ASP129 LEU130 PRO131 ASN132 ALA133 MET134 ASN135 ALA136 ALA137 GLU138 ILE139 THR140 ASP141 LYS142 LEU143 GLY144 LEU145 HIS146 SER147 LEU148 ARG149 HIS150 ARG151 ASN152 TRP153 TYR154 ILE155 GLN156 ALA157 THR158 CYS159 ALA160 THR161 SER162 GLY163 ASP164 GLY165 LEU166 TYR167 GLU168 GLY169 LEU170 ASP171 TRP172 LEU173 SER174 ASN175 GLN176 LEU177 ARG178 ASN179 GLN180
Unit 5 GLY16 SER17 MET18 ARG19 ILE20 LEU21 MET22 VAL23 GLY24 LEU25 ASP26 ALA27 ALA28 GLY29 LYS30 THR31 THR32 ILE33 LEU34 TYR35 LYS36 LEU37 LYS38 LEU39 GLY40 GLU41 ILE42 VAL43 THR44 THR45 ILE46 PRO47 THR48 ILE49 GLY50 PHE51 ASN52 VAL53 GLU54 THR55 VAL56 GLU57 TYR58 LYS59 ASN60 ILE61 SER62 PHE63 THR64 VAL65 TRP66 ASP67 VAL68 GLY69 GLY70 LEU71 ASP72 LYS73 ILE74 ARG75 PRO76 LEU77 TRP78 ARG79 HIS80 TYR81 PHE82 GLN83 ASN84 THR85 GLN86 GLY87 LEU88 ILE89 PHE90 VAL91 VAL92 ASP93 SER94 ASN95 ASP96 ARG97 GLU98 ARG99 VAL100 ASN101 GLU102 ALA103 ARG104 GLU105 GLU106 LEU107 MET108 ARG109 MET110 LEU111 ALA112 GLU113 ASP114 GLU115 LEU116 ARG117 ASP118 ALA119 VAL120 LEU121 LEU122 VAL123 PHE124 ALA125 ASN126 LYS127 GLN128 ASP129 LEU130 PRO131 ASN132 ALA133 MET134 ASN135 ALA136 ALA137 GLU138 ILE139 THR140 ASP141 LYS142 LEU143 GLY144 LEU145 HIS146 SER147 LEU148 ARG149 HIS150 ARG151 ASN152 TRP153 TYR154 ILE155 GLN156 ALA157 THR158 CYS159 ALA160 THR161 SER162 GLY163 ASP164 GLY165 LEU166 TYR167 GLU168 GLY169 LEU170 ASP171 TRP172 LEU173 SER174 ASN175 GLN176 LEU177 ARG178 ASN179 GLN180
Unit 6 GLY16 SER17 MET18 ARG19 ILE20 LEU21 MET22 VAL23 GLY24 LEU25 ASP26 ALA27 ALA28 GLY29 LYS30 THR31 THR32 ILE33 LEU34 TYR35 LYS36 LEU37 LYS38 LEU39 GLY40 GLU41 ILE42 VAL43 THR44 THR45 ILE46 PRO47 THR48 ILE49 GLY50 PHE51 ASN52 VAL53 GLU54 THR55 VAL56 GLU57 TYR58 LYS59 ASN60 ILE61 SER62 PHE63 THR64 VAL65 TRP66 ASP67 VAL68 GLY69 GLY70 LEU71 ASP72 LYS73 ILE74 ARG75 PRO76 LEU77 TRP78 ARG79 HIS80 TYR81 PHE82 GLN83 ASN84 THR85 GLN86 GLY87 LEU88 ILE89 PHE90 VAL91 VAL92 ASP93 SER94 ASN95 ASP96 ARG97 GLU98 ARG99 VAL100 ASN101 GLU102 ALA103 ARG104 GLU105 GLU106 LEU107 MET108 ARG109 MET110 LEU111 ALA112 GLU113 ASP114 GLU115 LEU116 ARG117 ASP118 ALA119 VAL120 LEU121 LEU122 VAL123 PHE124 ALA125 ASN126 LYS127 GLN128 ASP129 LEU130 PRO131 ASN132 ALA133 MET134 ASN135 ALA136 ALA137 GLU138 ILE139 THR140 ASP141 LYS142 LEU143 GLY144 LEU145 HIS146 SER147 LEU148 ARG149 HIS150 ARG151 ASN152 TRP153 TYR154 ILE155 GLN156 ALA157 THR158 CYS159 ALA160 THR161 SER162 GLY163 ASP164 GLY165 LEU166 TYR167 GLU168 GLY169 LEU170 ASP171 TRP172 LEU173 SER174 ASN175 GLN176 LEU177 ARG178 ASN179 GLN180
Unit 7 ALA931 ALA932 LYS933 GLU934 GLY935 TRP936 LEU937 HIS938 PHE939 ARG940 PRO941 LEU942 VAL943 PRO956 TRP957 LYS958 GLN959 MET960 TYR961 VAL962 VAL963 LEU964 ARG965 GLY966 HIS967 SER968 LEU969 TYR970 LEU971 TYR972 LYS973 ASP974 LYS975 ARG976 GLU977 GLN978 PRO987 ILE988 SER989 VAL990 ASN991 ALA992 CYS993 LEU994 ILE995 ASP996 ILE997 SER998 TYR999 SER1000 GLU1001 THR1002 LYS1003 ARG1004 LYS1005 ASN1006 VAL1007 PHE1008 ARG1009 LEU1010 THR1011 THR1012 SER1013 ASP1014 CYS1015 GLU1016 CYS1017 LEU1018 PHE1019 GLN1020 ALA1021 GLU1022 ASP1023 ARG1024 ASP1025 ASP1026 MET1027 LEU1028 ALA1029 TRP1030 ILE1031 LYS1032 THR1033 ILE1034 GLN1035 GLU1036 SER1037 SER1038 ASN1039 LEU1040 ASN1041 GLU1042 GLU1043 ASP1044 THR1045 GLY1046 VAL1047 THR1048 ASN1049 ARG1050 ASP1051 LEU1052 ILE1053 SER1054 ARG1055 ARG1056 ILE1057 LYS1058 GLU1059 TYR1060 ASN1061 ASN1062 LEU1063
Unit 8 ALA931 ALA932 LYS933 GLU934 GLY935 TRP936 LEU937 HIS938 PHE939 ARG940 PRO941 LEU942 VAL943 PRO956 TRP957 LYS958 GLN959 MET960 TYR961 VAL962 VAL963 LEU964 ARG965 GLY966 HIS967 SER968 LEU969 TYR970 LEU971 TYR972 LYS973 ASP974 LYS975 ARG976 GLU977 GLN978 GLN986 PRO987 ILE988 SER989 VAL990 ASN991 ALA992 CYS993 LEU994 ILE995 ASP996 ILE997 SER998 TYR999 SER1000 GLU1001 THR1002 LYS1003 ARG1004 LYS1005 ASN1006 VAL1007 PHE1008 ARG1009 LEU1010 THR1011 THR1012 SER1013 ASP1014 CYS1015 GLU1016 CYS1017 LEU1018 PHE1019 GLN1020 ALA1021 GLU1022 ASP1023 ARG1024 ASP1025 ASP1026 MET1027 LEU1028 ALA1029 TRP1030 ILE1031 LYS1032 THR1033 ILE1034 GLN1035 GLU1036 SER1037 SER1038 ASN1039 LEU1040 ASN1041 GLU1042 GLU1043 ASP1044 THR1045 GLY1046 VAL1047 THR1048 ASN1049 ARG1050 ASP1051 LEU1052 ILE1053 SER1054 ARG1055 ARG1056 ILE1057 LYS1058 GLU1059 TYR1060 ASN1061 ASN1062 LEU1063
Unit 9 ALA931 ALA932 LYS933 GLU934 GLY935 TRP936 LEU937 HIS938 PHE939 ARG940 PRO941 LEU942 VAL943 PRO956 TRP957 LYS958 GLN959 MET960 TYR961 VAL962 VAL963 LEU964 ARG965 GLY966 HIS967 SER968 LEU969 TYR970 LEU971 TYR972 LYS973 ASP974 LYS975 ARG976 GLU977 GLN978 PRO987 ILE988 SER989 VAL990 ASN991 ALA992 CYS993 LEU994 ILE995 ASP996 ILE997 SER998 TYR999 SER1000 GLU1001 THR1002 LYS1003 ARG1004 LYS1005 ASN1006 VAL1007 PHE1008 ARG1009 LEU1010 THR1011 THR1012 SER1013 ASP1014 CYS1015 GLU1016 CYS1017 LEU1018 PHE1019 GLN1020 ALA1021 GLU1022 ASP1023 ARG1024 ASP1025 ASP1026 MET1027 LEU1028 ALA1029 TRP1030 ILE1031 LYS1032 THR1033 ILE1034 GLN1035 GLU1036 SER1037 SER1038 ASN1039 LEU1040 ASN1041 GLU1042 GLU1043 ASP1044 THR1045 GLY1046 VAL1047 THR1048 ASN1049 ARG1050 ASP1051 LEU1052 ILE1053 SER1054 ARG1055 ARG1056 ILE1057 LYS1058 GLU1059 TYR1060 ASN1061
Unit 10 ALA931 ALA932 LYS933 GLU934 GLY935 TRP936 LEU937 HIS938 PHE939 ARG940 PRO941 LEU942 VAL943 PRO956 TRP957 LYS958 GLN959 MET960 TYR961 VAL962 VAL963 LEU964 ARG965 GLY966 HIS967 SER968 LEU969 TYR970 LEU971 TYR972 LYS973 ASP974 LYS975 ARG976 GLU977 GLN978 GLN986 PRO987 ILE988 SER989 VAL990 ASN991 ALA992 CYS993 LEU994 ILE995 ASP996 ILE997 SER998 TYR999 SER1000 GLU1001 THR1002 LYS1003 ARG1004 LYS1005 ASN1006 VAL1007 PHE1008 ARG1009 LEU1010 THR1011 THR1012 SER1013 ASP1014 CYS1015 GLU1016 CYS1017 LEU1018 PHE1019 GLN1020 ALA1021 GLU1022 ASP1023 ARG1024 ASP1025 ASP1026 MET1027 LEU1028 ALA1029 TRP1030 ILE1031 LYS1032 THR1033 ILE1034 GLN1035 GLU1036 SER1037 SER1038 ASN1039 LEU1040 ASN1041 GLU1042 GLU1043 ASP1044 THR1045 GLY1046 VAL1047 THR1048 ASN1049 ARG1050 ASP1051 LEU1052 ILE1053 SER1054 ARG1055 ARG1056 ILE1057 LYS1058 GLU1059 TYR1060 ASN1061 ASN1062 LEU1063
Unit 11 ALA931 ALA932 LYS933 GLU934 GLY935 TRP936 LEU937 HIS938 PHE939 ARG940 PRO941 LEU942 VAL943 PRO956 TRP957 LYS958 GLN959 MET960 TYR961 VAL962 VAL963 LEU964 ARG965 GLY966 HIS967 SER968 LEU969 TYR970 LEU971 TYR972 LYS973 ASP974 LYS975 ARG976 GLU977 GLN978 GLN986 PRO987 ILE988 SER989 VAL990 ASN991 ALA992 CYS993 LEU994 ILE995 ASP996 ILE997 SER998 TYR999 SER1000 GLU1001 THR1002 LYS1003 ARG1004 LYS1005 ASN1006 VAL1007 PHE1008 ARG1009 LEU1010 THR1011 THR1012 SER1013 ASP1014 CYS1015 GLU1016 CYS1017 LEU1018 PHE1019 GLN1020 ALA1021 GLU1022 ASP1023 ARG1024 ASP1025 ASP1026 MET1027 LEU1028 ALA1029 TRP1030 ILE1031 LYS1032 THR1033 ILE1034 GLN1035 GLU1036 SER1037 SER1038 ASN1039 LEU1040 ASN1041 GLU1042 GLU1043 ASP1044 THR1045 GLY1046 VAL1047 THR1048 ASN1049 ARG1050 ASP1051 LEU1052 ILE1053 SER1054 ARG1055 ARG1056 ILE1057 LYS1058 GLU1059 TYR1060 ASN1061 ASN1062 LEU1063
Unit 12 ALA931 ALA932 LYS933 GLU934 GLY935 TRP936 LEU937 HIS938 PHE939 ARG940 PRO941 LEU942 VAL943 PRO956 TRP957 LYS958 GLN959 MET960 TYR961 VAL962 VAL963 LEU964 ARG965 GLY966 HIS967 SER968 LEU969 TYR970 LEU971 TYR972 LYS973 ASP974 LYS975 ARG976 GLU977 GLN986 PRO987 ILE988 SER989 VAL990 ASN991 ALA992 CYS993 LEU994 ILE995 ASP996 ILE997 SER998 TYR999 SER1000 GLU1001 THR1002 LYS1003 ARG1004 LYS1005 ASN1006 VAL1007 PHE1008 ARG1009 LEU1010 THR1011 THR1012 SER1013 ASP1014 CYS1015 GLU1016 CYS1017 LEU1018 PHE1019 GLN1020 ALA1021 GLU1022 ASP1023 ARG1024 ASP1025 ASP1026 MET1027 LEU1028 ALA1029 TRP1030 ILE1031 LYS1032 THR1033 ILE1034 GLN1035 GLU1036 SER1037 SER1038 ASN1039 LEU1040 ASN1041 GLU1042 GLU1043 ASP1044 THR1045 GLY1046 VAL1047 THR1048 ASN1049 ARG1050 ASP1051 LEU1052 ILE1053 SER1054 ARG1055 ARG1056 ILE1057 LYS1058 GLU1059 TYR1060 ASN1061 ASN1062 LEU1063
Ligands
Unit 13 GTP1181 MG1182 DIO1183
Unit 14 GTP1181 MG1182 DIO1183
Unit 15 GTP1181 MG1182 EDO1183
Unit 16 GTP1181 MG1182
Unit 17 GTP1181 MG1182 EDO1183
Unit 18 GTP1181 MG1182 DIO1183
Unit 19 SO42064
Unit 20 SO42064
Unit 21 SO42062 EDO2063
Unit 22 SO42064
Unit 23 SO42064
Unit 24 SO42064
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany