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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE N-SEMIQUINONE IN COMPLEX WITH AMICYANIN.
Keywords OXIDOREDUCTASE, PERIPLASMIC, METAL-BINDING, ELECTRON TRANSPO SINGLE CRYSTAL MICROSPECTROPHOTOMETRY
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2J56     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AMICYANIN  A 105 806 0
2  Protein   AMICYANIN  B 105 806 0
3  Protein   METHYLAMINE DEHYDROGENASE HEAVY CHAIN  H 375 2914 0
4  Protein   METHYLAMINE DEHYDROGENASE HEAVY CHAIN  J 375 2910 0
5  Protein   METHYLAMINE DEHYDROGENASE LIGHT CHAIN  L 125 940 16
6  Protein   METHYLAMINE DEHYDROGENASE LIGHT CHAIN  M 125 934 16
7  Ligand   AMICYANIN  A 1 0 1
8  Ligand   AMICYANIN  B 1 0 1
9  Ligand   METHYLAMINE DEHYDROGENASE HEAVY CHAIN  H 1 0 6
10  Ligand   METHYLAMINE DEHYDROGENASE LIGHT CHAIN  L 1 0 1
11  Ligand   METHYLAMINE DEHYDROGENASE LIGHT CHAIN  M 1 0 1
12 Water     1033 0 1033
total       2248 9310 1075

Proteins
Unit 1 ASP1 LYS2 ALA3 THR4 ILE5 PRO6 SER7 GLU8 SER9 PRO10 PHE11 ALA12 ALA13 ALA14 GLU15 VAL16 ALA17 ASP18 GLY19 ALA20 ILE21 VAL22 VAL23 ASP24 ILE25 ALA26 LYS27 MET28 LYS29 TYR30 GLU31 THR32 PRO33 GLU34 LEU35 HIS36 VAL37 LYS38 VAL39 GLY40 ASP41 THR42 VAL43 THR44 TRP45 ILE46 ASN47 ARG48 GLU49 ALA50 MET51 PRO52 HIS53 ASN54 VAL55 HIS56 PHE57 VAL58 ALA59 GLY60 VAL61 LEU62 GLY63 GLU64 ALA65 ALA66 LEU67 LYS68 GLY69 PRO70 MET71 MET72 LYS73 LYS74 GLU75 GLN76 ALA77 TYR78 SER79 LEU80 THR81 PHE82 THR83 GLU84 ALA85 GLY86 THR87 TYR88 ASP89 TYR90 HIS91 CYS92 THR93 PRO94 HIS95 PRO96 PHE97 MET98 ARG99 GLY100 LYS101 VAL102 VAL103 VAL104 GLU105
Unit 2 ASP1 LYS2 ALA3 THR4 ILE5 PRO6 SER7 GLU8 SER9 PRO10 PHE11 ALA12 ALA13 ALA14 GLU15 VAL16 ALA17 ASP18 GLY19 ALA20 ILE21 VAL22 VAL23 ASP24 ILE25 ALA26 LYS27 MET28 LYS29 TYR30 GLU31 THR32 PRO33 GLU34 LEU35 HIS36 VAL37 LYS38 VAL39 GLY40 ASP41 THR42 VAL43 THR44 TRP45 ILE46 ASN47 ARG48 GLU49 ALA50 MET51 PRO52 HIS53 ASN54 VAL55 HIS56 PHE57 VAL58 ALA59 GLY60 VAL61 LEU62 GLY63 GLU64 ALA65 ALA66 LEU67 LYS68 GLY69 PRO70 MET71 MET72 LYS73 LYS74 GLU75 GLN76 ALA77 TYR78 SER79 LEU80 THR81 PHE82 THR83 GLU84 ALA85 GLY86 THR87 TYR88 ASP89 TYR90 HIS91 CYS92 THR93 PRO94 HIS95 PRO96 PHE97 MET98 ARG99 GLY100 LYS101 VAL102 VAL103 VAL104 GLU105
Unit 3 GLU12 THR13 GLN14 GLY15 GLN16 ALA17 ALA18 ALA19 ARG20 ALA21 ALA22 ALA23 ALA24 ASP25 LEU26 ALA27 ALA28 GLY29 GLN30 ASP31 ASP32 GLU33 PRO34 ARG35 ILE36 LEU37 GLU38 ALA39 PRO40 ALA41 PRO42 ASP43 ALA44 ARG45 ARG46 VAL47 TYR48 VAL49 ASN50 ASP51 PRO52 ALA53 HIS54 PHE55 ALA56 ALA57 VAL58 THR59 GLN60 GLN61 PHE62 VAL63 ILE64 ASP65 GLY66 GLU67 ALA68 GLY69 ARG70 VAL71 ILE72 GLY73 MET74 ILE75 ASP76 GLY77 GLY78 PHE79 LEU80 PRO81 ASN82 PRO83 VAL84 VAL85 ALA86 ASP87 ASP88 GLY89 SER90 PHE91 ILE92 ALA93 HIS94 ALA95 SER96 THR97 VAL98 PHE99 SER100 ARG101 ILE102 ALA103 ARG104 GLY105 GLU106 ARG107 THR108 ASP109 TYR110 VAL111 GLU112 VAL113 PHE114 ASP115 PRO116 VAL117 THR118 LEU119 LEU120 PRO121 THR122 ALA123 ASP124 ILE125 GLU126 LEU127 PRO128 ASP129 ALA130 PRO131 ARG132 PHE133 LEU134 VAL135 GLY136 THR137 TYR138 PRO139 TRP140 MET141 THR142 SER143 LEU144 THR145 PRO146 ASP147 GLY148 LYS149 THR150 LEU151 LEU152 PHE153 TYR154 GLN155 PHE156 SER157 PRO158 ALA159 PRO160 ALA161 VAL162 GLY163 VAL164 VAL165 ASP166 LEU167 GLU168 GLY169 LYS170 ALA171 PHE172 LYS173 ARG174 MET175 LEU176 ASP177 VAL178 PRO179 ASP180 CYS181 TYR182 HIS183 ILE184 PHE185 PRO186 THR187 ALA188 PRO189 ASP190 THR191 PHE192 PHE193 MET194 HIS195 CYS196 ARG197 ASP198 GLY199 SER200 LEU201 ALA202 LYS203 VAL204 ALA205 PHE206 GLY207 THR208 GLU209 GLY210 THR211 PRO212 GLU213 ILE214 THR215 HIS216 THR217 GLU218 VAL219 PHE220 HIS221 PRO222 GLU223 ASP224 GLU225 PHE226 LEU227 ILE228 ASN229 HIS230 PRO231 ALA232 TYR233 SER234 GLN235 LYS236 ALA237 GLY238 ARG239 LEU240 VAL241 TRP242 PRO243 THR244 TYR245 THR246 GLY247 LYS248 ILE249 HIS250 GLN251 ILE252 ASP253 LEU254 SER255 SER256 GLY257 ASP258 ALA259 LYS260 PHE261 LEU262 PRO263 ALA264 VAL265 GLU266 ALA267 LEU268 THR269 GLU270 ALA271 GLU272 ARG273 ALA274 ASP275 GLY276 TRP277 ARG278 PRO279 GLY280 GLY281 TRP282 GLN283 GLN284 VAL285 ALA286 TYR287 HIS288 ARG289 ALA290 LEU291 ASP292 ARG293 ILE294 TYR295 LEU296 LEU297 VAL298 ASP299 GLN300 ARG301 ASP302 GLU303 TRP304 ARG305 HIS306 LYS307 THR308 ALA309 SER310 ARG311 PHE312 VAL313 VAL314 VAL315 LEU316 ASP317 ALA318 LYS319 THR320 GLY321 GLU322 ARG323 LEU324 ALA325 LYS326 PHE327 GLU328 MET329 GLY330 HIS331 GLU332 ILE333 ASP334 SER335 ILE336 ASN337 VAL338 SER339 GLN340 ASP341 GLU342 LYS343 PRO344 LEU345 LEU346 TYR347 ALA348 LEU349 SER350 THR351 GLY352 ASP353 LYS354 THR355 LEU356 TYR357 ILE358 HIS359 ASP360 ALA361 GLU362 SER363 GLY364 GLU365 GLU366 LEU367 ARG368 SER369 VAL370 ASN371 GLN372 LEU373 GLY374 HIS375 GLY376 PRO377 GLN378 VAL379 ILE380 THR381 THR382 ALA383 ASP384 MET385 GLY386
Unit 4 GLU12 THR13 GLN14 GLY15 GLN16 ALA17 ALA18 ALA19 ARG20 ALA21 ALA22 ALA23 ALA24 ASP25 LEU26 ALA27 ALA28 GLY29 GLN30 ASP31 ASP32 GLU33 PRO34 ARG35 ILE36 LEU37 GLU38 ALA39 PRO40 ALA41 PRO42 ASP43 ALA44 ARG45 ARG46 VAL47 TYR48 VAL49 ASN50 ASP51 PRO52 ALA53 HIS54 PHE55 ALA56 ALA57 VAL58 THR59 GLN60 GLN61 PHE62 VAL63 ILE64 ASP65 GLY66 GLU67 ALA68 GLY69 ARG70 VAL71 ILE72 GLY73 MET74 ILE75 ASP76 GLY77 GLY78 PHE79 LEU80 PRO81 ASN82 PRO83 VAL84 VAL85 ALA86 ASP87 ASP88 GLY89 SER90 PHE91 ILE92 ALA93 HIS94 ALA95 SER96 THR97 VAL98 PHE99 SER100 ARG101 ILE102 ALA103 ARG104 GLY105 GLU106 ARG107 THR108 ASP109 TYR110 VAL111 GLU112 VAL113 PHE114 ASP115 PRO116 VAL117 THR118 LEU119 LEU120 PRO121 THR122 ALA123 ASP124 ILE125 GLU126 LEU127 PRO128 ASP129 ALA130 PRO131 ARG132 PHE133 LEU134 VAL135 GLY136 THR137 TYR138 PRO139 TRP140 MET141 THR142 SER143 LEU144 THR145 PRO146 ASP147 GLY148 LYS149 THR150 LEU151 LEU152 PHE153 TYR154 GLN155 PHE156 SER157 PRO158 ALA159 PRO160 ALA161 VAL162 GLY163 VAL164 VAL165 ASP166 LEU167 GLU168 GLY169 LYS170 ALA171 PHE172 LYS173 ARG174 MET175 LEU176 ASP177 VAL178 PRO179 ASP180 CYS181 TYR182 HIS183 ILE184 PHE185 PRO186 THR187 ALA188 PRO189 ASP190 THR191 PHE192 PHE193 MET194 HIS195 CYS196 ARG197 ASP198 GLY199 SER200 LEU201 ALA202 LYS203 VAL204 ALA205 PHE206 GLY207 THR208 GLU209 GLY210 THR211 PRO212 GLU213 ILE214 THR215 HIS216 THR217 GLU218 VAL219 PHE220 HIS221 PRO222 GLU223 ASP224 GLU225 PHE226 LEU227 ILE228 ASN229 HIS230 PRO231 ALA232 TYR233 SER234 GLN235 LYS236 ALA237 GLY238 ARG239 LEU240 VAL241 TRP242 PRO243 THR244 TYR245 THR246 GLY247 LYS248 ILE249 HIS250 GLN251 ILE252 ASP253 LEU254 SER255 SER256 GLY257 ASP258 ALA259 LYS260 PHE261 LEU262 PRO263 ALA264 VAL265 GLU266 ALA267 LEU268 THR269 GLU270 ALA271 GLU272 ARG273 ALA274 ASP275 GLY276 TRP277 ARG278 PRO279 GLY280 GLY281 TRP282 GLN283 GLN284 VAL285 ALA286 TYR287 HIS288 ARG289 ALA290 LEU291 ASP292 ARG293 ILE294 TYR295 LEU296 LEU297 VAL298 ASP299 GLN300 ARG301 ASP302 GLU303 TRP304 ARG305 HIS306 LYS307 THR308 ALA309 SER310 ARG311 PHE312 VAL313 VAL314 VAL315 LEU316 ASP317 ALA318 LYS319 THR320 GLY321 GLU322 ARG323 LEU324 ALA325 LYS326 PHE327 GLU328 MET329 GLY330 HIS331 GLU332 ILE333 ASP334 SER335 ILE336 ASN337 VAL338 SER339 GLN340 ASP341 GLU342 LYS343 PRO344 LEU345 LEU346 TYR347 ALA348 LEU349 SER350 THR351 GLY352 ASP353 LYS354 THR355 LEU356 TYR357 ILE358 HIS359 ASP360 ALA361 GLU362 SER363 GLY364 GLU365 GLU366 LEU367 ARG368 SER369 VAL370 ASN371 GLN372 LEU373 GLY374 HIS375 GLY376 PRO377 GLN378 VAL379 ILE380 THR381 THR382 ALA383 ASP384 MET385 GLY386
Unit 5 THR7 ASP8 PRO9 ARG10 ALA11 LYS12 TRP13 VAL14 PRO15 GLN16 ASP17 ASN18 ASP19 ILE20 GLN21 ALA22 CYS23 ASP24 TYR25 TRP26 ARG27 HIS28 CYS29 SER30 ILE31 ASP32 GLY33 ASN34 ILE35 CYS36 ASP37 CYS38 SER39 GLY40 GLY41 SER42 LEU43 THR44 ASN45 CYS46 PRO47 PRO48 GLY49 THR50 LYS51 LEU52 ALA53 THR54 ALA55 SER56 TQQ57 VAL58 ALA59 SER60 CYS61 TYR62 ASN63 PRO64 THR65 ASP66 GLY67 GLN68 SER69 TYR70 LEU71 ILE72 ALA73 TYR74 ARG75 ASP76 CYS77 CYS78 GLY79 TYR80 ASN81 VAL82 SER83 GLY84 ARG85 CYS86 PRO87 CYS88 LEU89 ASN90 THR91 GLU92 GLY93 GLU94 LEU95 PRO96 VAL97 TYR98 ARG99 PRO100 GLU101 PHE102 ALA103 ASN104 ASP105 ILE106 ILE107 TRP108 CYS109 PHE110 GLY111 ALA112 GLU113 ASP114 ASP115 ALA116 MET117 THR118 TYR119 HIS120 CYS121 THR122 ILE123 SER124 PRO125 ILE126 VAL127 GLY128 LYS129 ALA130 SER131
Unit 6 THR7 ASP8 PRO9 ARG10 ALA11 LYS12 TRP13 VAL14 PRO15 GLN16 ASP17 ASN18 ASP19 ILE20 GLN21 ALA22 CYS23 ASP24 TYR25 TRP26 ARG27 HIS28 CYS29 SER30 ILE31 ASP32 GLY33 ASN34 ILE35 CYS36 ASP37 CYS38 SER39 GLY40 GLY41 SER42 LEU43 THR44 ASN45 CYS46 PRO47 PRO48 GLY49 THR50 LYS51 LEU52 ALA53 THR54 ALA55 SER56 TQQ57 VAL58 ALA59 SER60 CYS61 TYR62 ASN63 PRO64 THR65 ASP66 GLY67 GLN68 SER69 TYR70 LEU71 ILE72 ALA73 TYR74 ARG75 ASP76 CYS77 CYS78 GLY79 TYR80 ASN81 VAL82 SER83 GLY84 ARG85 CYS86 PRO87 CYS88 LEU89 ASN90 THR91 GLU92 GLY93 GLU94 LEU95 PRO96 VAL97 TYR98 ARG99 PRO100 GLU101 PHE102 ALA103 ASN104 ASP105 ILE106 ILE107 TRP108 CYS109 PHE110 GLY111 ALA112 GLU113 ASP114 ASP115 ALA116 MET117 THR118 TYR119 HIS120 CYS121 THR122 ILE123 SER124 PRO125 ILE126 VAL127 GLY128 LYS129 ALA130 SER131

Ligands
Unit 7 CU1106
Unit 8 CU1106
Unit 9 GOL1387
Unit 10 NA1132
Unit 11 NA1131

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany