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Sequence, Chains, Asymmetric and Biological Units

Title L-FICOLIN COMPLEXED TO GALACTOSE
Keywords LECTIN, COLLAGEN, IMMUNOLOGY, GLYCOPROTEIN, SUGAR BINDING PR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2J3U     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FICOLIN-2  A 217 1736 0
2  Protein   FICOLIN-2  B 218 1744 0
3  Protein   FICOLIN-2  C 214 1715 0
4  Protein   FICOLIN-2  D 216 1729 0
5  Protein   FICOLIN-2  E 218 1744 0
6  Protein   FICOLIN-2  F 217 1736 0
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand   FICOLIN-2  A 1 0 1
10  Ligand   FICOLIN-2  B 7 0 66
11  Ligand   FICOLIN-2  C 6 0 66
12  Ligand   FICOLIN-2  D 1 0 1
13  Ligand   FICOLIN-2  E 6 0 72
14  Ligand   FICOLIN-2  F 6 0 66
15 Water     335 0 335
total       1666 10404 663

Proteins
Unit 1 PRO72 CYS73 LEU74 THR75 GLY76 PRO77 ARG78 THR79 CYS80 LYS81 ASP82 LEU83 LEU84 ASP85 ARG86 GLY87 HIS88 PHE89 LEU90 SER91 GLY92 TRP93 HIS94 THR95 ILE96 TYR97 LEU98 PRO99 ASP100 CYS101 ARG102 PRO103 LEU104 THR105 VAL106 LEU107 CYS108 ASP109 MET110 ASP111 THR112 ASP113 GLY114 GLY115 GLY116 TRP117 THR118 VAL119 PHE120 GLN121 ARG122 ARG123 VAL124 ASP125 GLY126 SER127 VAL128 ASP129 PHE130 TYR131 ARG132 ASP133 TRP134 ALA135 THR136 TYR137 LYS138 GLN139 GLY140 PHE141 GLY142 SER143 ARG144 LEU145 GLY146 GLU147 PHE148 TRP149 LEU150 GLY151 ASN152 ASP153 ASN154 ILE155 HIS156 ALA157 LEU158 THR159 ALA160 GLN161 GLY162 THR163 SER164 GLU165 LEU166 ARG167 THR168 ASP169 LEU170 VAL171 ASP172 PHE173 GLU174 ASP175 ASN176 TYR177 GLN178 PHE179 ALA180 LYS181 TYR182 ARG183 SER184 PHE185 LYS186 VAL187 ALA188 ASP189 GLU190 ALA191 GLU192 LYS193 TYR194 ASN195 LEU196 VAL197 LEU198 GLY199 ALA200 PHE201 VAL202 GLU203 GLY204 SER205 ALA206 GLY207 ASP208 SER209 LEU210 THR211 PHE212 HIS213 ASN214 ASN215 GLN216 SER217 PHE218 SER219 THR220 LYS221 ASP222 GLN223 ASP224 ASN225 ASP226 LEU227 ASN228 THR229 GLY230 ASN231 CYS232 ALA233 VAL234 MET235 PHE236 GLN237 GLY238 ALA239 TRP240 TRP241 TYR242 LYS243 ASN244 CYS245 HIS246 THR247 SER248 ASN249 LEU250 ASN251 GLY252 ARG253 TYR254 LEU255 ARG256 GLY257 THR258 HIS259 GLY260 SER261 PHE262 ALA263 ASN264 GLY265 ILE266 ASN267 TRP268 LYS269 SER270 GLY271 LYS272 GLY273 TYR274 ASN275 TYR276 SER277 TYR278 LYS279 VAL280 SER281 GLU282 MET283 LYS284 VAL285 ARG286 PRO287 ALA288
Unit 2 ASN71 PRO72 CYS73 LEU74 THR75 GLY76 PRO77 ARG78 THR79 CYS80 LYS81 ASP82 LEU83 LEU84 ASP85 ARG86 GLY87 HIS88 PHE89 LEU90 SER91 GLY92 TRP93 HIS94 THR95 ILE96 TYR97 LEU98 PRO99 ASP100 CYS101 ARG102 PRO103 LEU104 THR105 VAL106 LEU107 CYS108 ASP109 MET110 ASP111 THR112 ASP113 GLY114 GLY115 GLY116 TRP117 THR118 VAL119 PHE120 GLN121 ARG122 ARG123 VAL124 ASP125 GLY126 SER127 VAL128 ASP129 PHE130 TYR131 ARG132 ASP133 TRP134 ALA135 THR136 TYR137 LYS138 GLN139 GLY140 PHE141 GLY142 SER143 ARG144 LEU145 GLY146 GLU147 PHE148 TRP149 LEU150 GLY151 ASN152 ASP153 ASN154 ILE155 HIS156 ALA157 LEU158 THR159 ALA160 GLN161 GLY162 THR163 SER164 GLU165 LEU166 ARG167 THR168 ASP169 LEU170 VAL171 ASP172 PHE173 GLU174 ASP175 ASN176 TYR177 GLN178 PHE179 ALA180 LYS181 TYR182 ARG183 SER184 PHE185 LYS186 VAL187 ALA188 ASP189 GLU190 ALA191 GLU192 LYS193 TYR194 ASN195 LEU196 VAL197 LEU198 GLY199 ALA200 PHE201 VAL202 GLU203 GLY204 SER205 ALA206 GLY207 ASP208 SER209 LEU210 THR211 PHE212 HIS213 ASN214 ASN215 GLN216 SER217 PHE218 SER219 THR220 LYS221 ASP222 GLN223 ASP224 ASN225 ASP226 LEU227 ASN228 THR229 GLY230 ASN231 CYS232 ALA233 VAL234 MET235 PHE236 GLN237 GLY238 ALA239 TRP240 TRP241 TYR242 LYS243 ASN244 CYS245 HIS246 THR247 SER248 ASN249 LEU250 ASN251 GLY252 ARG253 TYR254 LEU255 ARG256 GLY257 THR258 HIS259 GLY260 SER261 PHE262 ALA263 ASN264 GLY265 ILE266 ASN267 TRP268 LYS269 SER270 GLY271 LYS272 GLY273 TYR274 ASN275 TYR276 SER277 TYR278 LYS279 VAL280 SER281 GLU282 MET283 LYS284 VAL285 ARG286 PRO287 ALA288
Unit 3 THR75 GLY76 PRO77 ARG78 THR79 CYS80 LYS81 ASP82 LEU83 LEU84 ASP85 ARG86 GLY87 HIS88 PHE89 LEU90 SER91 GLY92 TRP93 HIS94 THR95 ILE96 TYR97 LEU98 PRO99 ASP100 CYS101 ARG102 PRO103 LEU104 THR105 VAL106 LEU107 CYS108 ASP109 MET110 ASP111 THR112 ASP113 GLY114 GLY115 GLY116 TRP117 THR118 VAL119 PHE120 GLN121 ARG122 ARG123 VAL124 ASP125 GLY126 SER127 VAL128 ASP129 PHE130 TYR131 ARG132 ASP133 TRP134 ALA135 THR136 TYR137 LYS138 GLN139 GLY140 PHE141 GLY142 SER143 ARG144 LEU145 GLY146 GLU147 PHE148 TRP149 LEU150 GLY151 ASN152 ASP153 ASN154 ILE155 HIS156 ALA157 LEU158 THR159 ALA160 GLN161 GLY162 THR163 SER164 GLU165 LEU166 ARG167 THR168 ASP169 LEU170 VAL171 ASP172 PHE173 GLU174 ASP175 ASN176 TYR177 GLN178 PHE179 ALA180 LYS181 TYR182 ARG183 SER184 PHE185 LYS186 VAL187 ALA188 ASP189 GLU190 ALA191 GLU192 LYS193 TYR194 ASN195 LEU196 VAL197 LEU198 GLY199 ALA200 PHE201 VAL202 GLU203 GLY204 SER205 ALA206 GLY207 ASP208 SER209 LEU210 THR211 PHE212 HIS213 ASN214 ASN215 GLN216 SER217 PHE218 SER219 THR220 LYS221 ASP222 GLN223 ASP224 ASN225 ASP226 LEU227 ASN228 THR229 GLY230 ASN231 CYS232 ALA233 VAL234 MET235 PHE236 GLN237 GLY238 ALA239 TRP240 TRP241 TYR242 LYS243 ASN244 CYS245 HIS246 THR247 SER248 ASN249 LEU250 ASN251 GLY252 ARG253 TYR254 LEU255 ARG256 GLY257 THR258 HIS259 GLY260 SER261 PHE262 ALA263 ASN264 GLY265 ILE266 ASN267 TRP268 LYS269 SER270 GLY271 LYS272 GLY273 TYR274 ASN275 TYR276 SER277 TYR278 LYS279 VAL280 SER281 GLU282 MET283 LYS284 VAL285 ARG286 PRO287 ALA288
Unit 4 CYS73 LEU74 THR75 GLY76 PRO77 ARG78 THR79 CYS80 LYS81 ASP82 LEU83 LEU84 ASP85 ARG86 GLY87 HIS88 PHE89 LEU90 SER91 GLY92 TRP93 HIS94 THR95 ILE96 TYR97 LEU98 PRO99 ASP100 CYS101 ARG102 PRO103 LEU104 THR105 VAL106 LEU107 CYS108 ASP109 MET110 ASP111 THR112 ASP113 GLY114 GLY115 GLY116 TRP117 THR118 VAL119 PHE120 GLN121 ARG122 ARG123 VAL124 ASP125 GLY126 SER127 VAL128 ASP129 PHE130 TYR131 ARG132 ASP133 TRP134 ALA135 THR136 TYR137 LYS138 GLN139 GLY140 PHE141 GLY142 SER143 ARG144 LEU145 GLY146 GLU147 PHE148 TRP149 LEU150 GLY151 ASN152 ASP153 ASN154 ILE155 HIS156 ALA157 LEU158 THR159 ALA160 GLN161 GLY162 THR163 SER164 GLU165 LEU166 ARG167 THR168 ASP169 LEU170 VAL171 ASP172 PHE173 GLU174 ASP175 ASN176 TYR177 GLN178 PHE179 ALA180 LYS181 TYR182 ARG183 SER184 PHE185 LYS186 VAL187 ALA188 ASP189 GLU190 ALA191 GLU192 LYS193 TYR194 ASN195 LEU196 VAL197 LEU198 GLY199 ALA200 PHE201 VAL202 GLU203 GLY204 SER205 ALA206 GLY207 ASP208 SER209 LEU210 THR211 PHE212 HIS213 ASN214 ASN215 GLN216 SER217 PHE218 SER219 THR220 LYS221 ASP222 GLN223 ASP224 ASN225 ASP226 LEU227 ASN228 THR229 GLY230 ASN231 CYS232 ALA233 VAL234 MET235 PHE236 GLN237 GLY238 ALA239 TRP240 TRP241 TYR242 LYS243 ASN244 CYS245 HIS246 THR247 SER248 ASN249 LEU250 ASN251 GLY252 ARG253 TYR254 LEU255 ARG256 GLY257 THR258 HIS259 GLY260 SER261 PHE262 ALA263 ASN264 GLY265 ILE266 ASN267 TRP268 LYS269 SER270 GLY271 LYS272 GLY273 TYR274 ASN275 TYR276 SER277 TYR278 LYS279 VAL280 SER281 GLU282 MET283 LYS284 VAL285 ARG286 PRO287 ALA288
Unit 5 ASN71 PRO72 CYS73 LEU74 THR75 GLY76 PRO77 ARG78 THR79 CYS80 LYS81 ASP82 LEU83 LEU84 ASP85 ARG86 GLY87 HIS88 PHE89 LEU90 SER91 GLY92 TRP93 HIS94 THR95 ILE96 TYR97 LEU98 PRO99 ASP100 CYS101 ARG102 PRO103 LEU104 THR105 VAL106 LEU107 CYS108 ASP109 MET110 ASP111 THR112 ASP113 GLY114 GLY115 GLY116 TRP117 THR118 VAL119 PHE120 GLN121 ARG122 ARG123 VAL124 ASP125 GLY126 SER127 VAL128 ASP129 PHE130 TYR131 ARG132 ASP133 TRP134 ALA135 THR136 TYR137 LYS138 GLN139 GLY140 PHE141 GLY142 SER143 ARG144 LEU145 GLY146 GLU147 PHE148 TRP149 LEU150 GLY151 ASN152 ASP153 ASN154 ILE155 HIS156 ALA157 LEU158 THR159 ALA160 GLN161 GLY162 THR163 SER164 GLU165 LEU166 ARG167 THR168 ASP169 LEU170 VAL171 ASP172 PHE173 GLU174 ASP175 ASN176 TYR177 GLN178 PHE179 ALA180 LYS181 TYR182 ARG183 SER184 PHE185 LYS186 VAL187 ALA188 ASP189 GLU190 ALA191 GLU192 LYS193 TYR194 ASN195 LEU196 VAL197 LEU198 GLY199 ALA200 PHE201 VAL202 GLU203 GLY204 SER205 ALA206 GLY207 ASP208 SER209 LEU210 THR211 PHE212 HIS213 ASN214 ASN215 GLN216 SER217 PHE218 SER219 THR220 LYS221 ASP222 GLN223 ASP224 ASN225 ASP226 LEU227 ASN228 THR229 GLY230 ASN231 CYS232 ALA233 VAL234 MET235 PHE236 GLN237 GLY238 ALA239 TRP240 TRP241 TYR242 LYS243 ASN244 CYS245 HIS246 THR247 SER248 ASN249 LEU250 ASN251 GLY252 ARG253 TYR254 LEU255 ARG256 GLY257 THR258 HIS259 GLY260 SER261 PHE262 ALA263 ASN264 GLY265 ILE266 ASN267 TRP268 LYS269 SER270 GLY271 LYS272 GLY273 TYR274 ASN275 TYR276 SER277 TYR278 LYS279 VAL280 SER281 GLU282 MET283 LYS284 VAL285 ARG286 PRO287 ALA288
Unit 6 PRO72 CYS73 LEU74 THR75 GLY76 PRO77 ARG78 THR79 CYS80 LYS81 ASP82 LEU83 LEU84 ASP85 ARG86 GLY87 HIS88 PHE89 LEU90 SER91 GLY92 TRP93 HIS94 THR95 ILE96 TYR97 LEU98 PRO99 ASP100 CYS101 ARG102 PRO103 LEU104 THR105 VAL106 LEU107 CYS108 ASP109 MET110 ASP111 THR112 ASP113 GLY114 GLY115 GLY116 TRP117 THR118 VAL119 PHE120 GLN121 ARG122 ARG123 VAL124 ASP125 GLY126 SER127 VAL128 ASP129 PHE130 TYR131 ARG132 ASP133 TRP134 ALA135 THR136 TYR137 LYS138 GLN139 GLY140 PHE141 GLY142 SER143 ARG144 LEU145 GLY146 GLU147 PHE148 TRP149 LEU150 GLY151 ASN152 ASP153 ASN154 ILE155 HIS156 ALA157 LEU158 THR159 ALA160 GLN161 GLY162 THR163 SER164 GLU165 LEU166 ARG167 THR168 ASP169 LEU170 VAL171 ASP172 PHE173 GLU174 ASP175 ASN176 TYR177 GLN178 PHE179 ALA180 LYS181 TYR182 ARG183 SER184 PHE185 LYS186 VAL187 ALA188 ASP189 GLU190 ALA191 GLU192 LYS193 TYR194 ASN195 LEU196 VAL197 LEU198 GLY199 ALA200 PHE201 VAL202 GLU203 GLY204 SER205 ALA206 GLY207 ASP208 SER209 LEU210 THR211 PHE212 HIS213 ASN214 ASN215 GLN216 SER217 PHE218 SER219 THR220 LYS221 ASP222 GLN223 ASP224 ASN225 ASP226 LEU227 ASN228 THR229 GLY230 ASN231 CYS232 ALA233 VAL234 MET235 PHE236 GLN237 GLY238 ALA239 TRP240 TRP241 TYR242 LYS243 ASN244 CYS245 HIS246 THR247 SER248 ASN249 LEU250 ASN251 GLY252 ARG253 TYR254 LEU255 ARG256 GLY257 THR258 HIS259 GLY260 SER261 PHE262 ALA263 ASN264 GLY265 ILE266 ASN267 TRP268 LYS269 SER270 GLY271 LYS272 GLY273 TYR274 ASN275 TYR276 SER277 TYR278 LYS279 VAL280 SER281 GLU282 MET283 LYS284 VAL285 ARG286 PRO287 ALA288

Ligands
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 CA1289
Unit 10 ACT407 EPE1289 ACT1290 GLA1291 CA1292 MAN1295 P4C1296
Unit 11 EPE1289 GLA1290 ACT1291 CA1292 NAG1293 P4C1294
Unit 12 CA1289
Unit 13 GLA1289 ACT1290 CA1291 MAN1294 P4C1295 P4C1296
Unit 14 EPE1289 GLA1290 ACT1291 CA1292 NAG1293 P4C1294

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany