2J3F - Sequence, Chains, Asymmetric and Biological Units

• Title: L-FICOLIN COMPLEXED TO N-ACETYL-D-GALACTOSAMINE
• Keywords: SUGAR BINDING PROTEIN, COLLAGEN, IMMUNOLOGY, GLYCOPROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2J3F	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FICOLIN-2	A	218	1727	0
2	Protein	FICOLIN-2	B	217	1735	0
3	Protein	FICOLIN-2	C	214	1711	0
4	Protein	FICOLIN-2	D	217	1727	0
5	Protein	FICOLIN-2	E	217	1736	0
6	Protein	FICOLIN-2	F	217	1736	0
7	Ligand		G	5	0	60
8	Ligand		H	3	0	39
9	Ligand	FICOLIN-2	A	1	0	1
10	Ligand	FICOLIN-2	B	3	0	38
11	Ligand	FICOLIN-2	C	2	0	16
12	Ligand	FICOLIN-2	E	4	0	50
13	Ligand	FICOLIN-2	F	2	0	16
14	Water			53	0	53
total				1373	10372	273

Proteins

Unit 1	PRO 70 GLN 71 PRO 72 CYS 73 LEU 74 THR 75 GLY 76 PRO 77 ARG 78 THR 79 CYS 80 LYS 81 ASP 82 LEU 83 LEU 84 ASP 85 ARG 86 GLY 87 HIS 88 PHE 89 LEU 90 SER 91 GLY 92 TRP 93 HIS 94 THR 95 ILE 96 TYR 97 LEU 98 PRO 99 ASP 100 CYS 101 ARG 102 PRO 103 LEU 104 THR 105 VAL 106 LEU 107 CYS 108 ASP 109 MET 110 ASP 111 THR 112 ASP 113 GLY 114 GLY 115 GLY 116 TRP 117 THR 118 VAL 119 PHE 120 GLN 121 ARG 122 ARG 123 VAL 124 ASP 125 GLY 126 SER 127 VAL 128 ASP 129 PHE 130 TYR 131 ARG 132 ASP 133 TRP 134 ALA 135 THR 136 TYR 137 LYS 138 GLN 139 GLY 140 PHE 141 GLY 142 SER 143 ARG 144 LEU 145 GLY 146 GLU 147 PHE 148 TRP 149 LEU 150 GLY 151 ASN 152 ASP 153 ASN 154 ILE 155 HIS 156 ALA 157 LEU 158 THR 159 ALA 160 GLN 161 GLY 162 THR 163 SER 164 GLU 165 LEU 166 ARG 167 THR 168 ASP 169 LEU 170 VAL 171 ASP 172 PHE 173 GLU 174 ASP 175 ASN 176 TYR 177 GLN 178 PHE 179 ALA 180 LYS 181 TYR 182 ARG 183 SER 184 PHE 185 LYS 186 VAL 187 ALA 188 ASP 189 GLU 190 ALA 191 GLU 192 LYS 193 TYR 194 ASN 195 LEU 196 VAL 197 LEU 198 GLY 199 ALA 200 PHE 201 VAL 202 GLU 203 GLY 204 SER 205 ALA 206 GLY 207 ASP 208 SER 209 LEU 210 THR 211 PHE 212 HIS 213 ASN 214 ASN 215 GLN 216 SER 217 PHE 218 SER 219 THR 220 LYS 221 ASP 222 GLN 223 ASP 224 ASN 225 ASP 226 LEU 227 ASN 228 THR 229 GLY 230 ASN 231 CYS 232 ALA 233 VAL 234 MET 235 PHE 236 GLN 237 GLY 238 ALA 239 TRP 240 TRP 241 TYR 242 ASN 244 CYS 245 HIS 246 THR 247 SER 248 ASN 249 LEU 250 ASN 251 GLY 252 ARG 253 TYR 254 LEU 255 ARG 256 GLY 257 THR 258 HIS 259 GLY 260 SER 261 PHE 262 ALA 263 ASN 264 GLY 265 ILE 266 ASN 267 TRP 268 LYS 269 SER 270 GLY 271 LYS 272 GLY 273 TYR 274 ASN 275 TYR 276 SER 277 TYR 278 LYS 279 VAL 280 SER 281 GLU 282 MET 283 LYS 284 VAL 285 ARG 286 PRO 287 ALA 288
Unit 2	PRO 72 CYS 73 LEU 74 THR 75 GLY 76 PRO 77 ARG 78 THR 79 CYS 80 LYS 81 ASP 82 LEU 83 LEU 84 ASP 85 ARG 86 GLY 87 HIS 88 PHE 89 LEU 90 SER 91 GLY 92 TRP 93 HIS 94 THR 95 ILE 96 TYR 97 LEU 98 PRO 99 ASP 100 CYS 101 ARG 102 PRO 103 LEU 104 THR 105 VAL 106 LEU 107 CYS 108 ASP 109 MET 110 ASP 111 THR 112 ASP 113 GLY 114 GLY 115 GLY 116 TRP 117 THR 118 VAL 119 PHE 120 GLN 121 ARG 122 ARG 123 VAL 124 ASP 125 GLY 126 SER 127 VAL 128 ASP 129 PHE 130 TYR 131 ARG 132 ASP 133 TRP 134 ALA 135 THR 136 TYR 137 LYS 138 GLN 139 GLY 140 PHE 141 GLY 142 SER 143 ARG 144 LEU 145 GLY 146 GLU 147 PHE 148 TRP 149 LEU 150 GLY 151 ASN 152 ASP 153 ASN 154 ILE 155 HIS 156 ALA 157 LEU 158 THR 159 ALA 160 GLN 161 GLY 162 THR 163 SER 164 GLU 165 LEU 166 ARG 167 THR 168 ASP 169 LEU 170 VAL 171 ASP 172 PHE 173 GLU 174 ASP 175 ASN 176 TYR 177 GLN 178 PHE 179 ALA 180 LYS 181 TYR 182 ARG 183 SER 184 PHE 185 LYS 186 VAL 187 ALA 188 ASP 189 GLU 190 ALA 191 GLU 192 LYS 193 TYR 194 ASN 195 LEU 196 VAL 197 LEU 198 GLY 199 ALA 200 PHE 201 VAL 202 GLU 203 GLY 204 SER 205 ALA 206 GLY 207 ASP 208 SER 209 LEU 210 THR 211 PHE 212 HIS 213 ASN 214 ASN 215 GLN 216 SER 217 PHE 218 SER 219 THR 220 LYS 221 ASP 222 GLN 223 ASP 224 ASN 225 ASP 226 LEU 227 ASN 228 THR 229 GLY 230 ASN 231 CYS 232 ALA 233 VAL 234 MET 235 PHE 236 GLN 237 GLY 238 ALA 239 TRP 240 TRP 241 TYR 242 LYS 243 ASN 244 CYS 245 HIS 246 THR 247 SER 248 ASN 249 LEU 250 ASN 251 GLY 252 ARG 253 TYR 254 LEU 255 ARG 256 GLY 257 THR 258 HIS 259 GLY 260 SER 261 PHE 262 ALA 263 ASN 264 GLY 265 ILE 266 ASN 267 TRP 268 LYS 269 SER 270 GLY 271 LYS 272 GLY 273 TYR 274 ASN 275 TYR 276 SER 277 TYR 278 LYS 279 VAL 280 SER 281 GLU 282 MET 283 LYS 284 VAL 285 ARG 286 PRO 287 ALA 288
Unit 3	THR 75 GLY 76 PRO 77 ARG 78 THR 79 CYS 80 LYS 81 ASP 82 LEU 83 LEU 84 ASP 85 ARG 86 GLY 87 HIS 88 PHE 89 LEU 90 SER 91 GLY 92 TRP 93 HIS 94 THR 95 ILE 96 TYR 97 LEU 98 PRO 99 ASP 100 CYS 101 ARG 102 PRO 103 LEU 104 THR 105 VAL 106 LEU 107 CYS 108 ASP 109 MET 110 ASP 111 THR 112 ASP 113 GLY 114 GLY 115 GLY 116 TRP 117 THR 118 VAL 119 PHE 120 GLN 121 ARG 122 ARG 123 VAL 124 ASP 125 GLY 126 SER 127 VAL 128 ASP 129 PHE 130 TYR 131 ARG 132 ASP 133 TRP 134 ALA 135 THR 136 TYR 137 LYS 138 GLN 139 GLY 140 PHE 141 GLY 142 SER 143 ARG 144 LEU 145 GLY 146 GLU 147 PHE 148 TRP 149 LEU 150 GLY 151 ASN 152 ASP 153 ASN 154 ILE 155 HIS 156 ALA 157 LEU 158 THR 159 ALA 160 GLN 161 GLY 162 THR 163 SER 164 GLU 165 LEU 166 ARG 167 THR 168 ASP 169 LEU 170 VAL 171 ASP 172 PHE 173 GLU 174 ASP 175 ASN 176 TYR 177 GLN 178 PHE 179 ALA 180 LYS 181 TYR 182 ARG 183 SER 184 PHE 185 LYS 186 VAL 187 ALA 188 ASP 189 GLU 190 ALA 191 GLU 192 LYS 193 TYR 194 ASN 195 LEU 196 VAL 197 LEU 198 GLY 199 ALA 200 PHE 201 VAL 202 GLU 203 GLY 204 SER 205 ALA 206 GLY 207 ASP 208 SER 209 LEU 210 THR 211 PHE 212 HIS 213 ASN 214 ASN 215 GLN 216 SER 217 PHE 218 SER 219 THR 220 LYS 221 ASP 222 GLN 223 ASP 224 ASN 225 ASP 226 LEU 227 ASN 228 THR 229 GLY 230 ASN 231 CYS 232 ALA 233 VAL 234 MET 235 PHE 236 GLN 237 GLY 238 ALA 239 TRP 240 TRP 241 TYR 242 LYS 243 ASN 244 CYS 245 HIS 246 THR 247 SER 248 ASN 249 LEU 250 ASN 251 GLY 252 ARG 253 TYR 254 LEU 255 ARG 256 GLY 257 THR 258 HIS 259 GLY 260 SER 261 PHE 262 ALA 263 ASN 264 GLY 265 ILE 266 ASN 267 TRP 268 LYS 269 SER 270 GLY 271 LYS 272 GLY 273 TYR 274 ASN 275 TYR 276 SER 277 TYR 278 LYS 279 VAL 280 SER 281 GLU 282 MET 283 LYS 284 VAL 285 ARG 286 PRO 287 ALA 288
Unit 4	PRO 72 CYS 73 LEU 74 THR 75 GLY 76 PRO 77 ARG 78 THR 79 CYS 80 LYS 81 ASP 82 LEU 83 LEU 84 ASP 85 ARG 86 GLY 87 HIS 88 PHE 89 LEU 90 SER 91 GLY 92 TRP 93 HIS 94 THR 95 ILE 96 TYR 97 LEU 98 PRO 99 ASP 100 CYS 101 ARG 102 PRO 103 LEU 104 THR 105 VAL 106 LEU 107 CYS 108 ASP 109 MET 110 ASP 111 THR 112 ASP 113 GLY 114 GLY 115 GLY 116 TRP 117 THR 118 VAL 119 PHE 120 GLN 121 ARG 122 ARG 123 VAL 124 ASP 125 GLY 126 SER 127 VAL 128 ASP 129 PHE 130 TYR 131 ARG 132 ASP 133 TRP 134 ALA 135 THR 136 TYR 137 LYS 138 GLN 139 GLY 140 PHE 141 GLY 142 SER 143 ARG 144 LEU 145 GLY 146 GLU 147 PHE 148 TRP 149 LEU 150 GLY 151 ASN 152 ASP 153 ASN 154 ILE 155 HIS 156 ALA 157 LEU 158 THR 159 ALA 160 GLN 161 GLY 162 THR 163 SER 164 GLU 165 LEU 166 ARG 167 THR 168 ASP 169 LEU 170 VAL 171 ASP 172 PHE 173 GLU 174 ASP 175 ASN 176 TYR 177 GLN 178 PHE 179 ALA 180 LYS 181 TYR 182 ARG 183 SER 184 PHE 185 LYS 186 VAL 187 ALA 188 ASP 189 GLU 190 ALA 191 GLU 192 LYS 193 TYR 194 ASN 195 LEU 196 VAL 197 LEU 198 GLY 199 ALA 200 PHE 201 VAL 202 GLU 203 GLY 204 SER 205 ALA 206 GLY 207 ASP 208 SER 209 LEU 210 THR 211 PHE 212 HIS 213 ASN 214 ASN 215 GLN 216 SER 217 PHE 218 SER 219 THR 220 LYS 221 ASP 222 GLN 223 ASP 224 ASN 225 ASP 226 LEU 227 ASN 228 ASN 229 GLY 230 ASN 231 CYS 232 ALA 233 VAL 234 MET 235 PHE 236 GLN 237 GLY 238 ALA 239 TRP 240 TRP 241 TYR 242 LYS 243 ASN 244 CYS 245 HIS 246 THR 247 SER 248 ASN 249 LEU 250 ASN 251 GLY 252 ARG 253 TYR 254 LEU 255 ARG 256 GLY 257 THR 258 HIS 259 GLY 260 SER 261 PHE 262 ALA 263 ASN 264 GLY 265 ILE 266 ASN 267 TRP 268 LYS 269 SER 270 GLY 271 LYS 272 GLY 273 TYR 274 ASN 275 TYR 276 SER 277 TYR 278 LYS 279 VAL 280 SER 281 GLU 282 MET 283 LYS 284 VAL 285 ARG 286 PRO 287 ALA 288
Unit 5	PRO 72 CYS 73 LEU 74 THR 75 GLY 76 PRO 77 ARG 78 THR 79 CYS 80 LYS 81 ASP 82 LEU 83 LEU 84 ASP 85 ARG 86 GLY 87 HIS 88 PHE 89 LEU 90 SER 91 GLY 92 TRP 93 HIS 94 THR 95 ILE 96 TYR 97 LEU 98 PRO 99 ASP 100 CYS 101 ARG 102 PRO 103 LEU 104 THR 105 VAL 106 LEU 107 CYS 108 ASP 109 MET 110 ASP 111 THR 112 ASP 113 GLY 114 GLY 115 GLY 116 TRP 117 THR 118 VAL 119 PHE 120 GLN 121 ARG 122 ARG 123 VAL 124 ASP 125 GLY 126 SER 127 VAL 128 ASP 129 PHE 130 TYR 131 ARG 132 ASP 133 TRP 134 ALA 135 THR 136 TYR 137 LYS 138 GLN 139 GLY 140 PHE 141 GLY 142 SER 143 ARG 144 LEU 145 GLY 146 GLU 147 PHE 148 TRP 149 LEU 150 GLY 151 ASN 152 ASP 153 ASN 154 ILE 155 HIS 156 ALA 157 LEU 158 THR 159 ALA 160 GLN 161 GLY 162 THR 163 SER 164 GLU 165 LEU 166 ARG 167 THR 168 ASP 169 LEU 170 VAL 171 ASP 172 PHE 173 GLU 174 ASP 175 ASN 176 TYR 177 GLN 178 PHE 179 ALA 180 LYS 181 TYR 182 ARG 183 SER 184 PHE 185 LYS 186 VAL 187 ALA 188 ASP 189 GLU 190 ALA 191 GLU 192 LYS 193 TYR 194 ASN 195 LEU 196 VAL 197 LEU 198 GLY 199 ALA 200 PHE 201 VAL 202 GLU 203 GLY 204 SER 205 ALA 206 GLY 207 ASP 208 SER 209 LEU 210 THR 211 PHE 212 HIS 213 ASN 214 ASN 215 GLN 216 SER 217 PHE 218 SER 219 THR 220 LYS 221 ASP 222 GLN 223 ASP 224 ASN 225 ASP 226 LEU 227 ASN 228 THR 229 GLY 230 ASN 231 CYS 232 ALA 233 VAL 234 MET 235 PHE 236 GLN 237 GLY 238 ALA 239 TRP 240 TRP 241 TYR 242 LYS 243 ASN 244 CYS 245 HIS 246 THR 247 SER 248 ASN 249 LEU 250 ASN 251 GLY 252 ARG 253 TYR 254 LEU 255 ARG 256 GLY 257 THR 258 HIS 259 GLY 260 SER 261 PHE 262 ALA 263 ASN 264 GLY 265 ILE 266 ASN 267 TRP 268 LYS 269 SER 270 GLY 271 LYS 272 GLY 273 TYR 274 ASN 275 TYR 276 SER 277 TYR 278 LYS 279 VAL 280 SER 281 GLU 282 MET 283 LYS 284 VAL 285 ARG 286 PRO 287 ALA 288
Unit 6	PRO 72 CYS 73 LEU 74 THR 75 GLY 76 PRO 77 ARG 78 THR 79 CYS 80 LYS 81 ASP 82 LEU 83 LEU 84 ASP 85 ARG 86 GLY 87 HIS 88 PHE 89 LEU 90 SER 91 GLY 92 TRP 93 HIS 94 THR 95 ILE 96 TYR 97 LEU 98 PRO 99 ASP 100 CYS 101 ARG 102 PRO 103 LEU 104 THR 105 VAL 106 LEU 107 CYS 108 ASP 109 MET 110 ASP 111 THR 112 ASP 113 GLY 114 GLY 115 GLY 116 TRP 117 THR 118 VAL 119 PHE 120 GLN 121 ARG 122 ARG 123 VAL 124 ASP 125 GLY 126 SER 127 VAL 128 ASP 129 PHE 130 TYR 131 ARG 132 ASP 133 TRP 134 ALA 135 THR 136 TYR 137 LYS 138 GLN 139 GLY 140 PHE 141 GLY 142 SER 143 ARG 144 LEU 145 GLY 146 GLU 147 PHE 148 TRP 149 LEU 150 GLY 151 ASN 152 ASP 153 ASN 154 ILE 155 HIS 156 ALA 157 LEU 158 THR 159 ALA 160 GLN 161 GLY 162 THR 163 SER 164 GLU 165 LEU 166 ARG 167 THR 168 ASP 169 LEU 170 VAL 171 ASP 172 PHE 173 GLU 174 ASP 175 ASN 176 TYR 177 GLN 178 PHE 179 ALA 180 LYS 181 TYR 182 ARG 183 SER 184 PHE 185 LYS 186 VAL 187 ALA 188 ASP 189 GLU 190 ALA 191 GLU 192 LYS 193 TYR 194 ASN 195 LEU 196 VAL 197 LEU 198 GLY 199 ALA 200 PHE 201 VAL 202 GLU 203 GLY 204 SER 205 ALA 206 GLY 207 ASP 208 SER 209 LEU 210 THR 211 PHE 212 HIS 213 ASN 214 ASN 215 GLN 216 SER 217 PHE 218 SER 219 THR 220 LYS 221 ASP 222 GLN 223 ASP 224 ASN 225 ASP 226 LEU 227 ASN 228 THR 229 GLY 230 ASN 231 CYS 232 ALA 233 VAL 234 MET 235 PHE 236 GLN 237 GLY 238 ALA 239 TRP 240 TRP 241 TYR 242 LYS 243 ASN 244 CYS 245 HIS 246 THR 247 SER 248 ASN 249 LEU 250 ASN 251 GLY 252 ARG 253 TYR 254 LEU 255 ARG 256 GLY 257 THR 258 HIS 259 GLY 260 SER 261 PHE 262 ALA 263 ASN 264 GLY 265 ILE 266 ASN 267 TRP 268 LYS 269 SER 270 GLY 271 LYS 272 GLY 273 TYR 274 ASN 275 TYR 276 SER 277 TYR 278 LYS 279 VAL 280 SER 281 GLU 282 MET 283 LYS 284 VAL 285 ARG 286 PRO 287 ALA 288

Ligands

Unit 7	NAG 1 NAG 2 BMA 3 MAN 4 FUC 5
Unit 8	NAG 1 NAG 2 BMA 3
Unit 9	CA 1289
Unit 10	A2G 1289 CA 1290 P4C 1296
Unit 11	A2G 1289 CA 1290
Unit 12	A2G 1289 CA 1290 P4C 1294 EPE 1295
Unit 13	A2G 1289 CA 1290