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Sequence, Chains, Asymmetric and Biological Units

Title MS2-RNA HAIRPIN (4ONE -5) COMPLEX
Keywords VIRUS/RNA, HAIRPIN, CAPSID, LEVIVIRUS, VIRUS, COMPLEX (CAPSI PROTEIN-RNA HAIRPIN), VIRUS-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2IZ9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MS2 COAT PROTEIN  A 129 965 0
2  Protein   MS2 COAT PROTEIN  B 129 965 0
3  Protein   MS2 COAT PROTEIN  C 129 965 0
4  RNA    R 15 296 19
5  RNA    S 15 296 19
6 Water     156 0 156
total       573 3487 194

Proteins
Unit 1 ALA1 SER2 ASN3 PHE4 THR5 GLN6 PHE7 VAL8 LEU9 VAL10 ASP11 ASN12 GLY13 GLY14 THR15 GLY16 ASP17 VAL18 THR19 VAL20 ALA21 PRO22 SER23 ASN24 PHE25 ALA26 ASN27 GLY28 VAL29 ALA30 GLU31 TRP32 ILE33 SER34 SER35 ASN36 SER37 ARG38 SER39 GLN40 ALA41 TYR42 LYS43 VAL44 THR45 CYS46 SER47 VAL48 ARG49 GLN50 SER51 SER52 ALA53 GLN54 ASN55 ARG56 LYS57 TYR58 THR59 ILE60 LYS61 VAL62 GLU63 VAL64 PRO65 LYS66 VAL67 ALA68 THR69 GLN70 THR71 VAL72 GLY73 GLY74 VAL75 GLU76 LEU77 PRO78 VAL79 ALA80 ALA81 TRP82 ARG83 SER84 TYR85 LEU86 ASN87 MET88 GLU89 LEU90 THR91 ILE92 PRO93 ILE94 PHE95 ALA96 THR97 ASN98 SER99 ASP100 CYS101 GLU102 LEU103 ILE104 VAL105 LYS106 ALA107 MET108 GLN109 GLY110 LEU111 LEU112 LYS113 ASP114 GLY115 ASN116 PRO117 ILE118 PRO119 SER120 ALA121 ILE122 ALA123 ALA124 ASN125 SER126 GLY127 ILE128 TYR129
Unit 2 ALA1 SER2 ASN3 PHE4 THR5 GLN6 PHE7 VAL8 LEU9 VAL10 ASP11 ASN12 GLY13 GLY14 THR15 GLY16 ASP17 VAL18 THR19 VAL20 ALA21 PRO22 SER23 ASN24 PHE25 ALA26 ASN27 GLY28 VAL29 ALA30 GLU31 TRP32 ILE33 SER34 SER35 ASN36 SER37 ARG38 SER39 GLN40 ALA41 TYR42 LYS43 VAL44 THR45 CYS46 SER47 VAL48 ARG49 GLN50 SER51 SER52 ALA53 GLN54 ASN55 ARG56 LYS57 TYR58 THR59 ILE60 LYS61 VAL62 GLU63 VAL64 PRO65 LYS66 VAL67 ALA68 THR69 GLN70 THR71 VAL72 GLY73 GLY74 VAL75 GLU76 LEU77 PRO78 VAL79 ALA80 ALA81 TRP82 ARG83 SER84 TYR85 LEU86 ASN87 MET88 GLU89 LEU90 THR91 ILE92 PRO93 ILE94 PHE95 ALA96 THR97 ASN98 SER99 ASP100 CYS101 GLU102 LEU103 ILE104 VAL105 LYS106 ALA107 MET108 GLN109 GLY110 LEU111 LEU112 LYS113 ASP114 GLY115 ASN116 PRO117 ILE118 PRO119 SER120 ALA121 ILE122 ALA123 ALA124 ASN125 SER126 GLY127 ILE128 TYR129
Unit 3 ALA1 SER2 ASN3 PHE4 THR5 GLN6 PHE7 VAL8 LEU9 VAL10 ASP11 ASN12 GLY13 GLY14 THR15 GLY16 ASP17 VAL18 THR19 VAL20 ALA21 PRO22 SER23 ASN24 PHE25 ALA26 ASN27 GLY28 VAL29 ALA30 GLU31 TRP32 ILE33 SER34 SER35 ASN36 SER37 ARG38 SER39 GLN40 ALA41 TYR42 LYS43 VAL44 THR45 CYS46 SER47 VAL48 ARG49 GLN50 SER51 SER52 ALA53 GLN54 ASN55 ARG56 LYS57 TYR58 THR59 ILE60 LYS61 VAL62 GLU63 VAL64 PRO65 LYS66 VAL67 ALA68 THR69 GLN70 THR71 VAL72 GLY73 GLY74 VAL75 GLU76 LEU77 PRO78 VAL79 ALA80 ALA81 TRP82 ARG83 SER84 TYR85 LEU86 ASN87 MET88 GLU89 LEU90 THR91 ILE92 PRO93 ILE94 PHE95 ALA96 THR97 ASN98 SER99 ASP100 CYS101 GLU102 LEU103 ILE104 VAL105 LYS106 ALA107 MET108 GLN109 GLY110 LEU111 LEU112 LYS113 ASP114 GLY115 ASN116 PRO117 ILE118 PRO119 SER120 ALA121 ILE122 ALA123 ALA124 ASN125 SER126 GLY127 ILE128 TYR129

Nucleic acids
Unit 4 A3 U4 G5 A6 G7 G8 A9 U10 ONE11 A12 C13 C14 C15 A16 U17
Unit 5 A3 U4 G5 A6 G7 G8 A9 U10 ONE11 A12 C13 C14 C15 A16 U17

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany