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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE E. COLI SIGNAL REGOGNITION PARTICLE
Keywords RNA-BINDING, RNA-BINDING PROTEIN COMPLEX, SIGNAL RECOGNITION
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2IY3     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SIGNAL RECOGNITION PARTICLE PROTEIN,SIGNAL RECOGN PARTICLE 54 KDA PROTEIN  A 432 432 0
2  DNA    B 110 110 0
3  Protein   SIGNAL SEQUENCE  C 17 17 0
total       559 559 0

Proteins
Unit 1 MET1 PHE2 GLN3 GLN4 LEU5 SER6 ALA7 ARG8 LEU9 GLN10 GLU11 ALA12 ILE13 GLY14 ARG15 LEU16 ARG17 GLY18 ARG19 GLY20 ARG21 ILE22 THR23 GLU24 GLU25 ASP26 LEU27 LYS28 ALA29 THR30 LEU31 ARG32 GLU33 ILE34 ARG35 ARG36 ALA37 LEU38 MET39 ASP40 ALA41 ASP42 VAL43 ASN44 LEU45 GLU46 VAL47 ALA48 ARG49 ASP50 PHE51 VAL52 GLU53 ARG54 VAL55 ARG56 GLU57 GLU58 ALA59 LEU60 GLY61 LYS62 GLN63 VAL64 LEU65 GLU66 SER67 LEU68 THR69 PRO70 ALA71 GLU72 VAL73 ILE74 LEU75 ALA76 THR77 VAL78 TYR79 GLU80 ALA81 LEU82 LYS83 GLU84 ALA85 LEU86 GLY87 GLY88 GLU89 ALA90 ARG91 LEU92 PRO93 VAL94 LEU95 LYS96 ASP97 ARG98 ASN99 LEU100 TRP101 PHE102 LEU103 VAL104 GLY105 LEU106 GLN107 GLY108 SER109 GLY110 LYS111 THR112 THR113 THR114 ALA115 ALA116 LYS117 LEU118 ALA119 LEU120 TYR121 TYR122 LYS123 GLY124 LYS125 GLY126 ARG127 ARG128 PRO129 LEU130 LEU131 VAL132 ALA133 ALA134 ASP135 THR136 GLN137 ARG138 PRO139 ALA140 ALA141 ARG142 GLU143 GLN144 LEU145 ARG146 LEU147 LEU148 GLY149 GLU150 LYS151 VAL152 GLY153 VAL154 PRO155 VAL156 LEU157 GLU158 VAL159 MET160 ASP161 GLY162 GLU163 SER164 PRO165 GLU166 SER167 ILE168 ARG169 ARG170 ARG171 VAL172 GLU173 GLU174 LYS175 ALA176 ARG177 LEU178 GLU179 ALA180 ARG181 ASP182 LEU183 ILE184 LEU185 VAL186 ASP187 THR188 ALA189 GLY190 ARG191 LEU192 GLN193 ILE194 ASP195 GLU196 PRO197 LEU198 MET199 GLY200 GLU201 LEU202 ALA203 ARG204 LEU205 LYS206 GLU207 VAL208 LEU209 GLY210 PRO211 ASP212 GLU213 VAL214 LEU215 LEU216 VAL217 LEU218 ASP219 ALA220 MET221 THR222 GLY223 GLN224 GLU225 ALA226 LEU227 SER228 VAL229 ALA230 ARG231 ALA232 PHE233 ASP234 GLU235 LYS236 VAL237 GLY238 VAL239 THR240 GLY241 LEU242 VAL243 LEU244 THR245 LYS246 LEU247 ASP248 GLY249 ASP250 ALA251 ARG252 GLY253 GLY254 ALA255 ALA256 LEU257 SER258 ALA259 ARG260 HIS261 VAL262 THR263 GLY264 LYS265 PRO266 ILE267 TYR268 PHE269 ALA270 GLY271 VAL272 SER273 GLU274 LYS275 PRO276 GLU277 GLY278 LEU279 GLU280 PRO281 PHE282 TYR283 PRO284 GLU285 ARG286 LEU287 ALA288 GLY289 ARG290 ILE291 LEU292 GLY293 MET294 GLY295 ASP296 ILE297 GLU298 SER299 ILE300 LEU301 GLU302 LYS303 VAL304 LYS305 GLY306 LEU307 GLU308 GLU309 TYR310 ASP311 LYS312 ILE313 GLN314 LYS315 LYS316 MET317 GLU318 ASP319 VAL320 MET321 GLU322 GLY323 LYS324 GLY325 LYS326 LEU327 THR328 LEU329 ARG330 ASP331 VAL332 TYR333 ALA334 GLN335 ILE336 ILE337 ALA338 LEU339 ARG340 LYS341 MET342 GLY343 PRO344 LEU345 SER346 LYS347 VAL348 LEU349 GLN350 HIS351 ILE352 PRO353 GLY354 LEU355 GLY356 ILE357 MET358 LEU359 PRO360 THR361 PRO362 SER363 GLU364 ASP365 GLN366 LEU367 LYS368 ILE369 GLY370 GLU371 GLU372 LYS373 ILE374 ARG375 ARG376 TRP377 LEU378 ALA379 ALA380 LEU381 ASN382 SER383 MET384 THR385 TYR386 LYS387 GLU388 LEU389 GLU390 ASN391 PRO392 ASN393 ILE394 ILE395 ASP396 LYS397 SER398 ARG399 MET400 ARG401 ARG402 ILE403 ALA404 GLU405 GLY406 SER407 GLY408 LEU409 GLU410 VAL411 GLU412 GLU413 VAL414 ARG415 GLU416 LEU417 LEU418 GLU419 TRP420 TYR421 ASN422 ASN423 MET424 ASN425 ARG426 LEU427 LEU428 LYS429 MET430 VAL431 LYS432
Unit 3 ALA450 ALA451 LEU452 ALA453 LEU454 ALA455 ALA456 ALA457 ALA458 ALA459 LEU460 ALA461 LEU462 ALA463 ALA464 ALA465 GLY466

Nucleic acids
Unit 2 G1 G2 G3 G4 G5 C6 U7 C8 U9 G10 U11 U12 G13 G14 U15 U16 C17 U18 C19 C20 C21 G22 C23 A24 A25 C26 G27 C28 U29 A30 C31 U32 C33 U34 G35 U36 U37 U38 A39 C40 C41 A42 G43 G44 U45 C46 A47 G48 G49 U50 C51 C52 G53 A54 A55 A56 G57 G58 A59 A60 G61 C62 A63 G64 C65 C66 A67 A68 G69 G70 C71 A72 G73 A74 U75 G76 A77 C78 G79 C80 G81 U82 G83 U84 G85 C86 C87 G88 G89 G90 A91 U92 G93 U94 A95 G96 C97 U98 G99 G100 C101 A102 G103 G104 G105 C106 C107 C108 C109 C110

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany