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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN PROLIDASE
Keywords METALLOCARBOXYPEPTIDASE, DISEASE MUTATION, XAA-PRO DIPEPTIDA DIPEPTIDASE, PEPTIDASE D, COLLAGEN DEGRADATION, METALLOAMINOPEPTIDASE, ENZYME, PROTEASE, PEPD GENE, MANGANE HYDROLASE, METAL- BINDING, METALLOPROTEASE, PHOSPHORYLATION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2IW2     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   XAA-PRO DIPEPTIDASE  A 478 3717 0
2  Protein   XAA-PRO DIPEPTIDASE  B 478 3717 0
3  Ligand   XAA-PRO DIPEPTIDASE  A 3 0 3
4  Ligand   XAA-PRO DIPEPTIDASE  B 2 0 2
5 Water     991 0 991
total       1952 7434 996

Proteins
Unit 1 GLY7 PRO8 SER9 PHE10 TRP11 LEU12 GLY13 ASN14 GLU15 THR16 LEU17 LYS18 VAL19 PRO20 LEU21 ALA22 LEU23 PHE24 ALA25 LEU26 ASN27 ARG28 GLN29 ARG30 LEU31 CYS32 GLU33 ARG34 LEU35 ARG36 LYS37 ASN38 PRO39 ALA40 VAL41 GLN42 ALA43 GLY44 SER45 ILE46 VAL47 VAL48 LEU49 GLN50 GLY51 GLY52 GLU53 GLU54 THR55 GLN56 ARG57 TYR58 CYS59 THR60 ASP61 THR62 GLY63 VAL64 LEU65 PHE66 ARG67 GLN68 GLU69 SER70 PHE71 PHE72 HIS73 TRP74 ALA75 PHE76 GLY77 VAL78 THR79 GLU80 PRO81 GLY82 CYS83 TYR84 GLY85 VAL86 ILE87 ASP88 VAL89 ASP90 THR91 GLY92 LYS93 SER94 THR95 LEU96 PHE97 VAL98 PRO99 ARG100 LEU101 PRO102 ALA103 SER104 HIS105 ALA106 THR107 TRP108 MET109 GLY110 LYS111 ILE112 HIS113 SER114 LYS115 GLU116 HIS117 PHE118 LYS119 GLU120 LYS121 TYR122 ALA123 VAL124 ASP125 ASP126 VAL127 GLN128 TYR129 VAL130 ASP131 GLU132 ILE133 ALA134 SER135 VAL136 LEU137 THR138 SER139 GLN140 LYS141 PRO142 SER143 VAL144 LEU145 LEU146 THR147 LEU148 ARG149 GLY150 VAL151 ASN152 THR153 ASP154 SER155 GLY156 SER157 VAL158 CYS159 ARG160 GLU161 ALA162 SER163 PHE164 ASP165 GLY166 ILE167 SER168 LYS169 PHE170 GLU171 VAL172 ASN173 ASN174 THR175 ILE176 LEU177 HIS178 PRO179 GLU180 ILE181 VAL182 GLU183 CYS184 ARG185 VAL186 PHE187 LYS188 THR189 ASP190 MET191 GLU192 LEU193 GLU194 VAL195 LEU196 ARG197 TYR198 THR199 ASN200 LYS201 ILE202 SER203 SER204 GLU205 ALA206 HIS207 ARG208 GLU209 VAL210 MET211 LYS212 ALA213 VAL214 LYS215 VAL216 GLY217 MET218 LYS219 GLU220 TYR221 GLU222 LEU223 GLU224 SER225 LEU226 PHE227 GLU228 HIS229 TYR230 CYS231 TYR232 SER233 ARG234 GLY235 GLY236 MET237 ARG238 HIS239 SER240 SER241 TYR242 THR243 CYS244 ILE245 CYS246 GLY247 SER248 GLY249 GLU250 ASN251 SER252 ALA253 VAL254 LEU255 HIS256 TYR257 GLY258 HIS259 ALA260 GLY261 ALA262 PRO263 ASN264 ASP265 ARG266 THR267 ILE268 GLN269 ASN270 GLY271 ASP272 MET273 CYS274 LEU275 PHE276 ASP277 MET278 GLY279 GLY280 GLU281 TYR282 TYR283 CYS284 PHE285 ALA286 SER287 ASP288 ILE289 THR290 CYS291 SER292 PHE293 PRO294 ALA295 ASN296 GLY297 LYS298 PHE299 THR300 ALA301 ASP302 GLN303 LYS304 ALA305 VAL306 TYR307 GLU308 ALA309 VAL310 LEU311 ARG312 SER313 SER314 ARG315 ALA316 VAL317 MET318 GLY319 ALA320 MET321 LYS322 PRO323 GLY324 VAL325 TRP326 TRP327 PRO328 ASP329 MET330 HIS331 ARG332 LEU333 ALA334 ASP335 ARG336 ILE337 HIS338 LEU339 GLU340 GLU341 LEU342 ALA343 HIS344 MET345 GLY346 ILE347 LEU348 SER349 GLY350 SER351 VAL352 ASP353 ALA354 MET355 VAL356 GLN357 ALA358 HIS359 LEU360 GLY361 ALA362 VAL363 PHE364 MET365 PRO366 HIS367 GLY368 LEU369 GLY370 HIS371 PHE372 LEU373 GLY374 ILE375 ASP376 VAL377 HIS378 ASP379 VAL380 GLY381 GLY382 TYR383 PRO384 GLU385 GLY386 VAL387 GLU388 ARG389 ILE390 ASP391 GLU392 PRO393 GLY394 LEU395 ARG396 SER397 LEU398 ARG399 THR400 ALA401 ARG402 HIS403 LEU404 GLN405 PRO406 GLY407 MET408 VAL409 LEU410 THR411 VAL412 GLU413 PRO414 GLY415 ILE416 TYR417 PHE418 ILE419 ASP420 HIS421 LEU422 LEU423 ASP424 GLU425 ALA426 LEU427 ALA428 ASP429 PRO430 ALA431 ARG432 ALA433 SER434 PHE435 PHE436 ASN437 ARG438 GLU439 VAL440 LEU441 GLN442 ARG443 PHE444 ARG445 GLY446 PHE447 GLY448 GLY449 VAL450 ARG451 ILE452 GLU453 GLU454 ASP455 VAL456 VAL457 VAL458 THR459 ASP460 SER461 GLY462 ILE463 GLU464 LEU465 LEU466 THR467 CYS468 VAL469 PRO470 ARG471 THR472 VAL473 GLU474 GLU475 ILE476 GLU477 ALA478 CYS479 MET480 ALA481 GLY482 CYS483 ASP484
Unit 2 GLY7 PRO8 SER9 PHE10 TRP11 LEU12 GLY13 ASN14 GLU15 THR16 LEU17 LYS18 VAL19 PRO20 LEU21 ALA22 LEU23 PHE24 ALA25 LEU26 ASN27 ARG28 GLN29 ARG30 LEU31 CYS32 GLU33 ARG34 LEU35 ARG36 LYS37 ASN38 PRO39 ALA40 VAL41 GLN42 ALA43 GLY44 SER45 ILE46 VAL47 VAL48 LEU49 GLN50 GLY51 GLY52 GLU53 GLU54 THR55 GLN56 ARG57 TYR58 CYS59 THR60 ASP61 THR62 GLY63 VAL64 LEU65 PHE66 ARG67 GLN68 GLU69 SER70 PHE71 PHE72 HIS73 TRP74 ALA75 PHE76 GLY77 VAL78 THR79 GLU80 PRO81 GLY82 CYS83 TYR84 GLY85 VAL86 ILE87 ASP88 VAL89 ASP90 THR91 GLY92 LYS93 SER94 THR95 LEU96 PHE97 VAL98 PRO99 ARG100 LEU101 PRO102 ALA103 SER104 HIS105 ALA106 THR107 TRP108 MET109 GLY110 LYS111 ILE112 HIS113 SER114 LYS115 GLU116 HIS117 PHE118 LYS119 GLU120 LYS121 TYR122 ALA123 VAL124 ASP125 ASP126 VAL127 GLN128 TYR129 VAL130 ASP131 GLU132 ILE133 ALA134 SER135 VAL136 LEU137 THR138 SER139 GLN140 LYS141 PRO142 SER143 VAL144 LEU145 LEU146 THR147 LEU148 ARG149 GLY150 VAL151 ASN152 THR153 ASP154 SER155 GLY156 SER157 VAL158 CYS159 ARG160 GLU161 ALA162 SER163 PHE164 ASP165 GLY166 ILE167 SER168 LYS169 PHE170 GLU171 VAL172 ASN173 ASN174 THR175 ILE176 LEU177 HIS178 PRO179 GLU180 ILE181 VAL182 GLU183 CYS184 ARG185 VAL186 PHE187 LYS188 THR189 ASP190 MET191 GLU192 LEU193 GLU194 VAL195 LEU196 ARG197 TYR198 THR199 ASN200 LYS201 ILE202 SER203 SER204 GLU205 ALA206 HIS207 ARG208 GLU209 VAL210 MET211 LYS212 ALA213 VAL214 LYS215 VAL216 GLY217 MET218 LYS219 GLU220 TYR221 GLU222 LEU223 GLU224 SER225 LEU226 PHE227 GLU228 HIS229 TYR230 CYS231 TYR232 SER233 ARG234 GLY235 GLY236 MET237 ARG238 HIS239 SER240 SER241 TYR242 THR243 CYS244 ILE245 CYS246 GLY247 SER248 GLY249 GLU250 ASN251 SER252 ALA253 VAL254 LEU255 HIS256 TYR257 GLY258 HIS259 ALA260 GLY261 ALA262 PRO263 ASN264 ASP265 ARG266 THR267 ILE268 GLN269 ASN270 GLY271 ASP272 MET273 CYS274 LEU275 PHE276 ASP277 MET278 GLY279 GLY280 GLU281 TYR282 TYR283 CYS284 PHE285 ALA286 SER287 ASP288 ILE289 THR290 CYS291 SER292 PHE293 PRO294 ALA295 ASN296 GLY297 LYS298 PHE299 THR300 ALA301 ASP302 GLN303 LYS304 ALA305 VAL306 TYR307 GLU308 ALA309 VAL310 LEU311 ARG312 SER313 SER314 ARG315 ALA316 VAL317 MET318 GLY319 ALA320 MET321 LYS322 PRO323 GLY324 VAL325 TRP326 TRP327 PRO328 ASP329 MET330 HIS331 ARG332 LEU333 ALA334 ASP335 ARG336 ILE337 HIS338 LEU339 GLU340 GLU341 LEU342 ALA343 HIS344 MET345 GLY346 ILE347 LEU348 SER349 GLY350 SER351 VAL352 ASP353 ALA354 MET355 VAL356 GLN357 ALA358 HIS359 LEU360 GLY361 ALA362 VAL363 PHE364 MET365 PRO366 HIS367 GLY368 LEU369 GLY370 HIS371 PHE372 LEU373 GLY374 ILE375 ASP376 VAL377 HIS378 ASP379 VAL380 GLY381 GLY382 TYR383 PRO384 GLU385 GLY386 VAL387 GLU388 ARG389 ILE390 ASP391 GLU392 PRO393 GLY394 LEU395 ARG396 SER397 LEU398 ARG399 THR400 ALA401 ARG402 HIS403 LEU404 GLN405 PRO406 GLY407 MET408 VAL409 LEU410 THR411 VAL412 GLU413 PRO414 GLY415 ILE416 TYR417 PHE418 ILE419 ASP420 HIS421 LEU422 LEU423 ASP424 GLU425 ALA426 LEU427 ALA428 ASP429 PRO430 ALA431 ARG432 ALA433 SER434 PHE435 PHE436 ASN437 ARG438 GLU439 VAL440 LEU441 GLN442 ARG443 PHE444 ARG445 GLY446 PHE447 GLY448 GLY449 VAL450 ARG451 ILE452 GLU453 GLU454 ASP455 VAL456 VAL457 VAL458 THR459 ASP460 SER461 GLY462 ILE463 GLU464 LEU465 LEU466 THR467 CYS468 VAL469 PRO470 ARG471 THR472 VAL473 GLU474 GLU475 ILE476 GLU477 ALA478 CYS479 MET480 ALA481 GLY482 CYS483 ASP484

Ligands
Unit 3 NA1484 NA1485 NA1486
Unit 4 NA1484 NA1485

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany