2IDB - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF 3-OCTAPRENYL-4-HYDROXYBENZOATE DECARBOX (UBID) FROM ESCHERICHIA COLI, NORTHEAST STRUCTURAL GENOMICS ER459.
• Keywords: ALPHA-BETA PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRU INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG,
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2IDB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE	A	474	3646	88
2	Protein	3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE	B	455	3488	88
3	Protein	3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE	C	456	3514	80
4	Ligand	3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE	A	2	0	20
5	Ligand	3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE	B	1	0	16
6	Ligand	3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE	C	3	0	24
7	Water			154	0	154
total				1545	10648	470

Proteins

Unit 1	TYR 6 ASN 7 ASP 8 LEU 9 ARG 10 ASP 11 PHE 12 LEU 13 THR 14 LEU 15 LEU 16 GLU 17 GLN 18 GLN 19 GLY 20 GLU 21 LEU 22 LYS 23 ARG 24 ILE 25 THR 26 LEU 27 PRO 28 VAL 29 ASP 30 PRO 31 HIS 32 LEU 33 GLU 34 ILE 35 THR 36 GLU 37 ILE 38 ALA 39 ASP 40 ARG 41 THR 42 LEU 43 ARG 44 ALA 45 GLY 46 GLY 47 PRO 48 ALA 49 LEU 50 LEU 51 PHE 52 GLU 53 ASN 54 PRO 55 LYS 56 GLY 57 TYR 58 SER 59 MSE 60 PRO 61 VAL 62 LEU 63 CYS 64 ASN 65 LEU 66 PHE 67 GLY 68 THR 69 PRO 70 LYS 71 ARG 72 VAL 73 ALA 74 MSE 75 GLY 76 MSE 77 GLY 78 GLN 79 GLU 80 ASP 81 VAL 82 SER 83 ALA 84 LEU 85 ARG 86 GLU 87 VAL 88 GLY 89 LYS 90 LEU 91 LEU 92 ALA 93 PHE 94 LEU 95 LYS 96 GLU 97 PRO 98 GLU 99 PRO 100 PRO 101 LYS 102 GLY 103 PHE 104 ARG 105 ASP 106 LEU 107 MSE 120 PRO 121 THR 122 LYS 123 ARG 124 LEU 125 ARG 126 GLY 127 ALA 128 PRO 129 CYS 130 GLN 131 GLN 132 LYS 133 ILE 134 VAL 135 SER 136 GLY 137 ASP 138 ASP 139 VAL 140 ASP 141 LEU 142 ASN 143 ARG 144 ILE 145 PRO 146 ILE 147 MSE 148 THR 149 CYS 150 TRP 151 PRO 152 GLU 153 ASP 154 ALA 155 ALA 156 PRO 157 LEU 158 ILE 159 THR 160 TRP 161 GLY 162 LEU 163 THR 164 VAL 165 THR 166 ARG 167 GLY 168 PRO 169 HIS 170 LYS 171 GLU 172 ARG 173 GLN 174 ASN 175 LEU 176 GLY 177 ILE 178 TYR 179 ARG 180 GLN 181 GLN 182 LEU 183 ILE 184 GLY 185 LYS 186 ASN 187 LYS 188 LEU 189 ILE 190 MSE 191 ARG 192 TRP 193 LEU 194 SER 195 HIS 196 ARG 197 GLY 198 GLY 199 ALA 200 LEU 201 ASP 202 TYR 203 GLN 204 GLU 205 TRP 206 CYS 207 ALA 208 ALA 209 HIS 210 PRO 211 GLY 212 GLU 213 ARG 214 PHE 215 PRO 216 VAL 217 SER 218 VAL 219 ALA 220 LEU 221 GLY 222 ALA 223 ASP 224 PRO 225 ALA 226 THR 227 ILE 228 LEU 229 GLY 230 ALA 231 VAL 232 THR 233 PRO 234 VAL 235 PRO 236 ASP 237 THR 238 LEU 239 SER 240 GLU 241 TYR 242 ALA 243 PHE 244 ALA 245 GLY 246 LEU 247 LEU 248 ARG 249 GLY 250 THR 251 LYS 252 THR 253 GLU 254 VAL 255 VAL 256 LYS 257 CYS 258 ILE 259 SER 260 ASN 261 ASP 262 LEU 263 GLU 264 VAL 265 PRO 266 ALA 267 SER 268 ALA 269 GLU 270 ILE 271 VAL 272 LEU 273 GLU 274 GLY 275 TYR 276 ILE 277 GLU 278 GLN 279 GLY 280 GLU 281 THR 282 ALA 283 PRO 284 GLU 285 GLY 286 PRO 287 TYR 288 GLY 289 ASP 290 HIS 291 THR 292 GLY 293 TYR 294 TYR 295 ASN 296 GLU 297 VAL 298 ASP 299 SER 300 PHE 301 PRO 302 VAL 303 PHE 304 THR 305 VAL 306 THR 307 HIS 308 ILE 309 THR 310 GLN 311 ARG 312 GLU 313 ASP 314 ALA 315 ILE 316 TYR 317 HIS 318 SER 319 THR 320 TYR 321 THR 322 GLY 323 ARG 324 PRO 325 PRO 326 ASP 327 GLU 328 PRO 329 ALA 330 VAL 331 LEU 332 GLY 333 VAL 334 ALA 335 LEU 336 ASN 337 GLU 338 VAL 339 PHE 340 VAL 341 PRO 342 ILE 343 LEU 344 GLN 345 LYS 346 GLN 347 PHE 348 PRO 349 GLU 350 ILE 351 VAL 352 ASP 353 PHE 354 TYR 355 LEU 356 PRO 357 PRO 358 GLU 359 GLY 360 CYS 361 SER 362 TYR 363 ARG 364 LEU 365 ALA 366 VAL 367 VAL 368 THR 369 ILE 370 LYS 371 LYS 372 GLN 373 TYR 374 ALA 375 GLY 376 HIS 377 ALA 378 LYS 379 ARG 380 VAL 381 MSE 382 MSE 383 GLY 384 VAL 385 TRP 386 SER 387 PHE 388 LEU 389 ARG 390 GLN 391 PHE 392 MSE 393 TYR 394 THR 395 LYS 396 PHE 397 VAL 398 ILE 399 VAL 400 CYS 401 ASP 402 ASP 403 ASP 404 VAL 405 ASN 406 ALA 407 ARG 408 ASP 409 TRP 410 ASN 411 ASP 412 VAL 413 ILE 414 TRP 415 ALA 416 ILE 417 THR 418 THR 419 ARG 420 MSE 421 ASP 422 PRO 423 ALA 424 ARG 425 ASP 426 THR 427 VAL 428 LEU 429 VAL 430 GLU 431 ASN 432 THR 433 PRO 434 ILE 435 ASP 436 TYR 437 LEU 438 ASP 439 PHE 440 ALA 441 SER 442 PRO 443 VAL 444 SER 445 GLY 446 LEU 447 GLY 448 SER 449 LYS 450 MSE 451 GLY 452 LEU 453 ASP 454 ALA 455 THR 456 ASN 457 LYS 458 TRP 459 PRO 460 GLY 461 GLU 462 THR 463 GLN 464 ARG 465 GLU 466 TRP 467 GLY 468 ARG 469 PRO 470 ILE 471 LYS 472 LYS 473 ASP 474 PRO 475 ASP 476 VAL 477 VAL 478 ALA 479 HIS 480 ILE 481 ASP 482 ALA 483 ILE 484 TRP 485 ASP 486 GLU 487 LEU 488 ALA 489 ILE 490 PHE 491
Unit 2	ASN 7 ASP 8 LEU 9 ARG 10 ASP 11 PHE 12 LEU 13 THR 14 LEU 15 LEU 16 GLU 17 GLN 18 GLN 19 GLY 20 GLU 21 LEU 22 LYS 23 ARG 24 ILE 25 THR 26 LEU 27 PRO 28 VAL 29 ASP 30 PRO 31 HIS 32 LEU 33 GLU 34 ILE 35 THR 36 GLU 37 ILE 38 ALA 39 ASP 40 ARG 41 THR 42 LEU 43 ARG 44 ALA 45 GLY 46 GLY 47 PRO 48 ALA 49 LEU 50 LEU 51 PHE 52 GLU 53 ASN 54 PRO 55 LYS 56 GLY 57 TYR 58 SER 59 MSE 60 PRO 61 VAL 62 LEU 63 CYS 64 ASN 65 LEU 66 PHE 67 GLY 68 THR 69 PRO 70 LYS 71 ARG 72 VAL 73 ALA 74 MSE 75 GLY 76 MSE 77 GLY 78 GLN 79 GLU 80 ASP 81 VAL 82 SER 83 ALA 84 LEU 85 ARG 86 GLU 87 VAL 88 GLY 89 LYS 90 LEU 91 LEU 92 ALA 93 MSE 120 PRO 121 THR 122 LYS 123 ARG 124 LEU 125 ARG 126 GLY 127 ALA 128 PRO 129 CYS 130 GLN 131 GLN 132 LYS 133 ILE 134 VAL 135 SER 136 GLY 137 ASP 138 ASP 139 VAL 140 ASP 141 LEU 142 ASN 143 ARG 144 ILE 145 PRO 146 ILE 147 MSE 148 THR 149 CYS 150 TRP 151 PRO 152 GLU 153 ASP 154 ALA 155 ALA 156 PRO 157 LEU 158 ILE 159 THR 160 TRP 161 GLY 162 LEU 163 THR 164 VAL 165 THR 166 ARG 167 GLY 168 PRO 169 HIS 170 LYS 171 GLU 172 ARG 173 GLN 174 ASN 175 LEU 176 GLY 177 ILE 178 TYR 179 ARG 180 GLN 181 GLN 182 LEU 183 ILE 184 GLY 185 LYS 186 ASN 187 LYS 188 LEU 189 ILE 190 MSE 191 ARG 192 TRP 193 LEU 194 SER 195 HIS 196 ARG 197 GLY 198 GLY 199 ALA 200 LEU 201 ASP 202 TYR 203 GLN 204 GLU 205 TRP 206 CYS 207 ALA 208 ALA 209 HIS 210 PRO 211 GLY 212 GLU 213 ARG 214 PHE 215 PRO 216 VAL 217 SER 218 VAL 219 ALA 220 LEU 221 GLY 222 ALA 223 ASP 224 PRO 225 ALA 226 THR 227 ILE 228 LEU 229 GLY 230 ALA 231 VAL 232 THR 233 PRO 234 VAL 235 GLU 241 TYR 242 ALA 243 PHE 244 ALA 245 GLY 246 LEU 247 LEU 248 ARG 249 GLY 250 THR 251 LYS 252 THR 253 GLU 254 VAL 255 VAL 256 LYS 257 CYS 258 ILE 259 SER 260 ASN 261 ASP 262 LEU 263 GLU 264 VAL 265 PRO 266 ALA 267 SER 268 ALA 269 GLU 270 ILE 271 VAL 272 LEU 273 GLU 274 GLY 275 TYR 276 ILE 277 GLU 278 GLN 279 GLY 280 GLU 281 THR 282 ALA 283 PRO 284 GLU 285 GLY 286 PRO 287 TYR 288 GLY 289 ASP 290 HIS 291 THR 292 GLY 293 TYR 294 TYR 295 ASN 296 GLU 297 VAL 298 ASP 299 SER 300 PHE 301 PRO 302 VAL 303 PHE 304 THR 305 VAL 306 THR 307 HIS 308 ILE 309 THR 310 GLN 311 ARG 312 GLU 313 ASP 314 ALA 315 ILE 316 TYR 317 HIS 318 SER 319 THR 320 TYR 321 THR 322 GLY 323 ARG 324 PRO 325 PRO 326 ASP 327 GLU 328 PRO 329 ALA 330 VAL 331 LEU 332 GLY 333 VAL 334 ALA 335 LEU 336 ASN 337 GLU 338 VAL 339 PHE 340 VAL 341 PRO 342 ILE 343 LEU 344 GLN 345 LYS 346 GLN 347 PHE 348 PRO 349 GLU 350 ILE 351 VAL 352 ASP 353 PHE 354 TYR 355 LEU 356 PRO 357 PRO 358 GLU 359 GLY 360 CYS 361 SER 362 TYR 363 ARG 364 LEU 365 ALA 366 VAL 367 VAL 368 THR 369 ILE 370 LYS 371 LYS 372 GLN 373 TYR 374 ALA 375 GLY 376 HIS 377 ALA 378 LYS 379 ARG 380 VAL 381 MSE 382 MSE 383 GLY 384 VAL 385 TRP 386 SER 387 PHE 388 LEU 389 ARG 390 GLN 391 PHE 392 MSE 393 TYR 394 THR 395 LYS 396 PHE 397 VAL 398 ILE 399 VAL 400 CYS 401 ASP 402 ASP 403 ASP 404 VAL 405 ASN 406 ALA 407 ARG 408 ASP 409 TRP 410 ASN 411 ASP 412 VAL 413 ILE 414 TRP 415 ALA 416 ILE 417 THR 418 THR 419 ARG 420 MSE 421 ASP 422 PRO 423 ALA 424 ARG 425 ASP 426 THR 427 VAL 428 LEU 429 VAL 430 GLU 431 ASN 432 THR 433 PRO 434 ILE 435 ASP 436 TYR 437 LEU 438 ASP 439 PHE 440 ALA 441 SER 442 PRO 443 VAL 444 SER 445 GLY 446 LEU 447 GLY 448 SER 449 LYS 450 MSE 451 GLY 452 LEU 453 ASP 454 ALA 455 THR 456 ASN 457 LYS 458 TRP 459 PRO 460 GLY 461 GLU 462 THR 463 GLN 464 ARG 465 GLU 466 TRP 467 GLY 468 ARG 469 PRO 470 ILE 471 LYS 472 LYS 473 ASP 474 PRO 475 ASP 476 VAL 477 VAL 478 ALA 479 HIS 480 ILE 481 ASP 482 ALA 483 ILE 484 TRP 485 ASP 486 GLU 487 LEU 488 ALA 489 ILE 490 PHE 491 ASN 492
Unit 3	LYS 5 TYR 6 ASN 7 ASP 8 LEU 9 ARG 10 ASP 11 PHE 12 LEU 13 THR 14 LEU 15 LEU 16 GLU 17 GLN 18 GLN 19 GLY 20 GLU 21 LEU 22 LYS 23 ARG 24 ILE 25 THR 26 LEU 27 PRO 28 VAL 29 ASP 30 PRO 31 HIS 32 LEU 33 GLU 34 ILE 35 THR 36 GLU 37 ILE 38 ALA 39 ASP 40 ARG 41 THR 42 LEU 43 ARG 44 ALA 45 GLY 46 GLY 47 PRO 48 ALA 49 LEU 50 LEU 51 PHE 52 GLU 53 ASN 54 PRO 55 LYS 56 GLY 57 TYR 58 SER 59 MSE 60 PRO 61 VAL 62 LEU 63 CYS 64 ASN 65 LEU 66 PHE 67 GLY 68 THR 69 PRO 70 LYS 71 ARG 72 VAL 73 ALA 74 MSE 75 GLY 76 MSE 77 GLY 78 GLN 79 GLU 80 ASP 81 VAL 82 SER 83 ALA 84 LEU 85 ARG 86 GLU 87 VAL 88 GLY 89 LYS 90 LEU 91 LEU 92 ALA 93 PHE 94 LEU 95 LYS 96 LYS 123 ARG 124 LEU 125 ARG 126 GLY 127 ALA 128 PRO 129 CYS 130 GLN 131 GLN 132 LYS 133 ILE 134 VAL 135 SER 136 GLY 137 ASP 138 ASP 139 VAL 140 ASP 141 LEU 142 ASN 143 ARG 144 ILE 145 PRO 146 ILE 147 MSE 148 THR 149 CYS 150 TRP 151 PRO 152 GLU 153 ASP 154 ALA 155 ALA 156 PRO 157 LEU 158 ILE 159 THR 160 TRP 161 GLY 162 LEU 163 THR 164 VAL 165 THR 166 ARG 167 GLY 168 PRO 169 HIS 170 LYS 171 GLU 172 ARG 173 GLN 174 ASN 175 LEU 176 GLY 177 ILE 178 TYR 179 ARG 180 GLN 181 GLN 182 LEU 183 ILE 184 GLY 185 LYS 186 ASN 187 LYS 188 LEU 189 ILE 190 MSE 191 ARG 192 TRP 193 LEU 194 SER 195 HIS 196 ARG 197 GLY 198 GLY 199 ALA 200 LEU 201 ASP 202 TYR 203 GLN 204 GLU 205 TRP 206 CYS 207 ALA 208 ALA 209 HIS 210 PRO 211 GLY 212 GLU 213 ARG 214 PHE 215 PRO 216 VAL 217 SER 218 VAL 219 ALA 220 LEU 221 GLY 222 ALA 223 ASP 224 PRO 225 ALA 226 THR 227 ILE 228 LEU 229 GLY 230 ALA 231 VAL 232 THR 233 PRO 234 SER 240 GLU 241 TYR 242 ALA 243 PHE 244 ALA 245 GLY 246 LEU 247 LEU 248 ARG 249 GLY 250 THR 251 LYS 252 THR 253 GLU 254 VAL 255 VAL 256 LYS 257 CYS 258 ILE 259 SER 260 ASN 261 ASP 262 LEU 263 GLU 264 VAL 265 PRO 266 ALA 267 SER 268 ALA 269 GLU 270 ILE 271 VAL 272 LEU 273 GLU 274 GLY 275 TYR 276 ILE 277 GLU 278 GLN 279 GLY 280 GLU 281 THR 282 ALA 283 PRO 284 GLU 285 GLY 286 PRO 287 TYR 288 GLY 289 ASP 290 HIS 291 THR 292 GLY 293 TYR 294 TYR 295 ASN 296 GLU 297 VAL 298 ASP 299 SER 300 PHE 301 PRO 302 VAL 303 PHE 304 THR 305 VAL 306 THR 307 HIS 308 ILE 309 THR 310 GLN 311 ARG 312 GLU 313 ASP 314 ALA 315 ILE 316 TYR 317 HIS 318 SER 319 THR 320 TYR 321 THR 322 GLY 323 ARG 324 PRO 325 PRO 326 ASP 327 GLU 328 PRO 329 ALA 330 VAL 331 LEU 332 GLY 333 VAL 334 ALA 335 LEU 336 ASN 337 GLU 338 VAL 339 PHE 340 VAL 341 PRO 342 ILE 343 LEU 344 GLN 345 LYS 346 GLN 347 PHE 348 PRO 349 GLU 350 ILE 351 VAL 352 ASP 353 PHE 354 TYR 355 LEU 356 PRO 357 PRO 358 GLU 359 GLY 360 CYS 361 SER 362 TYR 363 ARG 364 LEU 365 ALA 366 VAL 367 VAL 368 THR 369 ILE 370 LYS 371 LYS 372 GLN 373 TYR 374 ALA 375 GLY 376 HIS 377 ALA 378 LYS 379 ARG 380 VAL 381 MSE 382 MSE 383 GLY 384 VAL 385 TRP 386 SER 387 PHE 388 LEU 389 ARG 390 GLN 391 PHE 392 MSE 393 TYR 394 THR 395 LYS 396 PHE 397 VAL 398 ILE 399 VAL 400 CYS 401 ASP 402 ASP 403 ASP 404 VAL 405 ASN 406 ALA 407 ARG 408 ASP 409 TRP 410 ASN 411 ASP 412 VAL 413 ILE 414 TRP 415 ALA 416 ILE 417 THR 418 THR 419 ARG 420 MSE 421 ASP 422 PRO 423 ALA 424 ARG 425 ASP 426 THR 427 VAL 428 LEU 429 VAL 430 GLU 431 ASN 432 THR 433 PRO 434 ILE 435 ASP 436 TYR 437 LEU 438 ASP 439 PHE 440 ALA 441 SER 442 PRO 443 VAL 444 SER 445 GLY 446 LEU 447 GLY 448 SER 449 LYS 450 MSE 451 GLY 452 LEU 453 ASP 454 ALA 455 THR 456 ASN 457 LYS 458 TRP 459 PRO 460 GLY 461 GLU 462 THR 463 GLN 464 ARG 465 GLU 466 TRP 467 GLY 468 ARG 469 PRO 470 ILE 471 LYS 472 LYS 473 ASP 474 PRO 475 ASP 476 VAL 477 VAL 478 ALA 479 HIS 480 ILE 481 ASP 482 ALA 483 ILE 484 TRP 485 ASP 486 GLU 487 LEU 488 ALA 489 ILE 490 PHE 491

Ligands

Unit 4	1PE 506 EDO 507
Unit 5	1PE 506
Unit 6	1PE 506 EDO 507 EDO 508