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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PSEUDOURIDINE SYNTHASE RLUA: INDIRECT SEQUENCE READOUT THROUGH PROTEIN-INDUCED RNA STRUCTURE
Keywords PSEUDOURIDINE SYNTHASE, LYASE/RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2I82     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    E 21 439 0
2  RNA    F 21 439 0
3  RNA    G 21 439 0
4  RNA    H 21 429 0
5  Protein   RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE A  A 217 1664 64
6  Protein   RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE A  B 214 1628 56
7  Protein   RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE A  C 215 1628 56
8  Protein   RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE A  D 216 1634 56
9  Ligand   5'- R(*GP*AP*GP*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*CP *UP*C)-3'  E 1 0 10
10  Ligand   5'- R(*GP*AP*GP*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*CP *UP*C)-3'  G 1 0 10
11 Water     255 0 255
total       1203 8300 507
Proteins
Unit 5 MSE3 GLU4 ASN5 TYR6 ASN7 PRO8 PRO9 GLN10 GLU11 PRO12 TRP13 LEU14 VAL15 ILE16 LEU17 TYR18 GLN19 ASP20 ASP21 HIS22 ILE23 MSE24 VAL25 VAL26 ASN27 LYS28 PRO29 SER30 GLY31 LEU32 LEU33 SER34 VAL35 PRO36 GLY37 ARG38 LEU39 GLU40 GLU41 HIS42 LYS43 ASP44 SER45 VAL46 MSE47 THR48 ARG49 ILE50 GLN51 ARG52 ASP53 TYR54 PRO55 GLN56 ALA57 GLU58 SER59 VAL60 HIS61 ARG62 LEU63 ASP64 MSE65 ALA66 THR67 SER68 GLY69 VAL70 ILE71 VAL72 VAL73 ALA74 LEU75 THR76 LYS77 ALA78 ALA79 GLU80 ARG81 GLU82 LEU83 LYS84 ARG85 GLN86 PHE87 ARG88 GLU89 ARG90 GLU91 PRO92 LYS93 LYS94 GLN95 TYR96 VAL97 ALA98 ARG99 VAL100 TRP101 GLY102 HIS103 PRO104 SER105 PRO106 ALA107 GLU108 GLY109 LEU110 VAL111 ASP112 LEU113 PRO114 LEU115 ILE116 CYS117 ASP118 TRP119 PRO120 ASN121 ARG122 PRO123 LYS124 GLN125 LYS126 VAL127 CYS128 TYR129 GLU130 THR131 GLY132 LYS133 PRO134 ALA135 GLN136 THR137 GLU138 TYR139 GLU140 VAL141 VAL142 GLU143 TYR144 ALA145 ALA146 ASP147 ASN148 THR149 ALA150 ARG151 VAL152 VAL153 LEU154 LYS155 PRO156 ILE157 THR158 GLY159 ARG160 SER161 HIS162 GLN163 LEU164 ARG165 VAL166 HIS167 MSE168 LEU169 ALA170 LEU171 GLY172 HIS173 PRO174 ILE175 LEU176 GLY177 ASP178 ARG179 PHE180 TYR181 ALA182 SER183 PRO184 GLU185 ALA186 ARG187 ALA188 MSE189 ALA190 PRO191 ARG192 LEU193 LEU194 LEU195 HIS196 ALA197 GLU198 MSE199 LEU200 THR201 ILE202 THR203 HIS204 PRO205 ALA206 TYR207 GLY208 ASN209 SER210 MSE211 THR212 PHE213 LYS214 ALA215 PRO216 ALA217 ASP218 PHE219
Unit 6 TYR306 ASN307 PRO308 PRO309 GLN310 GLU311 PRO312 TRP313 LEU314 VAL315 ILE316 LEU317 TYR318 GLN319 ASP320 ASP321 HIS322 ILE323 MSE324 VAL325 VAL326 ASN327 LYS328 PRO329 SER330 GLY331 LEU332 LEU333 SER334 VAL335 PRO336 GLY337 ARG338 LEU339 GLU340 GLU341 HIS342 LYS343 ASP344 SER345 VAL346 MSE347 THR348 ARG349 ILE350 GLN351 ARG352 ASP353 TYR354 PRO355 GLN356 ALA357 GLU358 SER359 VAL360 HIS361 ARG362 LEU363 ASP364 MSE365 ALA366 THR367 SER368 GLY369 VAL370 ILE371 VAL372 VAL373 ALA374 LEU375 THR376 LYS377 ALA378 ALA379 GLU380 ARG381 GLU382 LEU383 LYS384 ARG385 GLN386 PHE387 ARG388 GLU389 ARG390 GLU391 PRO392 LYS393 LYS394 GLN395 TYR396 VAL397 ALA398 ARG399 VAL400 TRP401 GLY402 HIS403 PRO404 SER405 PRO406 ALA407 GLU408 GLY409 LEU410 VAL411 ASP412 LEU413 PRO414 LEU415 ILE416 CYS417 ASP418 TRP419 PRO420 ASN421 ARG422 PRO423 LYS424 GLN425 LYS426 VAL427 CYS428 TYR429 GLU430 THR431 GLY432 LYS433 PRO434 ALA435 GLN436 THR437 GLU438 TYR439 GLU440 VAL441 VAL442 GLU443 TYR444 ALA445 ALA446 ASP447 ASN448 THR449 ALA450 ARG451 VAL452 VAL453 LEU454 LYS455 PRO456 ILE457 THR458 GLY459 ARG460 SER461 HIS462 GLN463 LEU464 ARG465 VAL466 HIS467 MSE468 LEU469 ALA470 LEU471 GLY472 HIS473 PRO474 ILE475 LEU476 GLY477 ASP478 ARG479 PHE480 TYR481 ALA482 SER483 PRO484 GLU485 ALA486 ARG487 ALA488 MSE489 ALA490 PRO491 ARG492 LEU493 LEU494 LEU495 HIS496 ALA497 GLU498 MSE499 LEU500 THR501 ILE502 THR503 HIS504 PRO505 ALA506 TYR507 GLY508 ASN509 SER510 MSE511 THR512 PHE513 LYS514 ALA515 PRO516 ALA517 ASP518 PHE519
Unit 7 ASN605 TYR606 ASN607 PRO608 PRO609 GLN610 GLU611 PRO612 TRP613 LEU614 VAL615 ILE616 LEU617 TYR618 GLN619 ASP620 ASP621 HIS622 ILE623 MSE624 VAL625 VAL626 ASN627 LYS628 PRO629 SER630 GLY631 LEU632 LEU633 SER634 VAL635 PRO636 GLY637 ARG638 LEU639 GLU640 GLU641 HIS642 LYS643 ASP644 SER645 VAL646 MSE647 THR648 ARG649 ILE650 GLN651 ARG652 ASP653 TYR654 PRO655 GLN656 ALA657 GLU658 SER659 VAL660 HIS661 ARG662 LEU663 ASP664 MSE665 ALA666 THR667 SER668 GLY669 VAL670 ILE671 VAL672 VAL673 ALA674 LEU675 THR676 LYS677 ALA678 ALA679 GLU680 ARG681 GLU682 LEU683 LYS684 ARG685 GLN686 PHE687 ARG688 GLU689 ARG690 GLU691 PRO692 LYS693 LYS694 GLN695 TYR696 VAL697 ALA698 ARG699 VAL700 TRP701 GLY702 HIS703 PRO704 SER705 PRO706 ALA707 GLU708 GLY709 LEU710 VAL711 ASP712 LEU713 PRO714 LEU715 ILE716 CYS717 ASP718 TRP719 PRO720 ASN721 ARG722 PRO723 LYS724 GLN725 LYS726 VAL727 CYS728 TYR729 GLU730 THR731 GLY732 LYS733 PRO734 ALA735 GLN736 THR737 GLU738 TYR739 GLU740 VAL741 VAL742 GLU743 TYR744 ALA745 ALA746 ASP747 ASN748 THR749 ALA750 ARG751 VAL752 VAL753 LEU754 LYS755 PRO756 ILE757 THR758 GLY759 ARG760 SER761 HIS762 GLN763 LEU764 ARG765 VAL766 HIS767 MSE768 LEU769 ALA770 LEU771 GLY772 HIS773 PRO774 ILE775 LEU776 GLY777 ASP778 ARG779 PHE780 TYR781 ALA782 SER783 PRO784 GLU785 ALA786 ARG787 ALA788 MSE789 ALA790 PRO791 ARG792 LEU793 LEU794 LEU795 HIS796 ALA797 GLU798 MSE799 LEU800 THR801 ILE802 THR803 HIS804 PRO805 ALA806 TYR807 GLY808 ASN809 SER810 MSE811 THR812 PHE813 LYS814 ALA815 PRO816 ALA817 ASP818 PHE819
Unit 8 GLU904 ASN905 TYR906 ASN907 PRO908 PRO909 GLN910 GLU911 PRO912 TRP913 LEU914 VAL915 ILE916 LEU917 TYR918 GLN919 ASP920 ASP921 HIS922 ILE923 MSE924 VAL925 VAL926 ASN927 LYS928 PRO929 SER930 GLY931 LEU932 LEU933 SER934 VAL935 PRO936 GLY937 ARG938 LEU939 GLU940 GLU941 HIS942 LYS943 ASP944 SER945 VAL946 MSE947 THR948 ARG949 ILE950 GLN951 ARG952 ASP953 TYR954 PRO955 GLN956 ALA957 GLU958 SER959 VAL960 HIS961 ARG962 LEU963 ASP964 MSE965 ALA966 THR967 SER968 GLY969 VAL970 ILE971 VAL972 VAL973 ALA974 LEU975 THR976 LYS977 ALA978 ALA979 GLU980 ARG981 GLU982 LEU983 LYS984 ARG985 GLN986 PHE987 ARG988 GLU989 ARG990 GLU991 PRO992 LYS993 LYS994 GLN995 TYR996 VAL997 ALA998 ARG999 VAL1000 TRP1001 GLY1002 HIS1003 PRO1004 SER1005 PRO1006 ALA1007 GLU1008 GLY1009 LEU1010 VAL1011 ASP1012 LEU1013 PRO1014 LEU1015 ILE1016 CYS1017 ASP1018 TRP1019 PRO1020 ASN1021 ARG1022 PRO1023 LYS1024 GLN1025 LYS1026 VAL1027 CYS1028 TYR1029 GLU1030 THR1031 GLY1032 LYS1033 PRO1034 ALA1035 GLN1036 THR1037 GLU1038 TYR1039 GLU1040 VAL1041 VAL1042 GLU1043 TYR1044 ALA1045 ALA1046 ASP1047 ASN1048 THR1049 ALA1050 ARG1051 VAL1052 VAL1053 LEU1054 LYS1055 PRO1056 ILE1057 THR1058 GLY1059 ARG1060 SER1061 HIS1062 GLN1063 LEU1064 ARG1065 VAL1066 HIS1067 MSE1068 LEU1069 ALA1070 LEU1071 GLY1072 HIS1073 PRO1074 ILE1075 LEU1076 GLY1077 ASP1078 ARG1079 PHE1080 TYR1081 ALA1082 SER1083 PRO1084 GLU1085 ALA1086 ARG1087 ALA1088 MSE1089 ALA1090 PRO1091 ARG1092 LEU1093 LEU1094 LEU1095 HIS1096 ALA1097 GLU1098 MSE1099 LEU1100 THR1101 ILE1102 THR1103 HIS1104 PRO1105 ALA1106 TYR1107 GLY1108 ASN1109 SER1110 MSE1111 THR1112 PHE1113 LYS1114 ALA1115 PRO1116 ALA1117 ASP1118 PHE1119
Nucleic acids
Unit 1 G1201 A1202 G1203 G1204 G1205 G1206 A1207 N1208 U1209 G1210 A1211 A1212 A1213 A1214 U1215 C1216 C1217 C1218 C1219 U1220 C1221
Unit 2 G1301 A1302 G1303 G1304 G1305 G1306 A1307 N1308 U1309 G1310 A1311 A1312 A1313 A1314 U1315 C1316 C1317 C1318 C1319 U1320 C1321
Unit 3 G1401 A1402 G1403 G1404 G1405 G1406 A1407 N1408 U1409 G1410 A1411 A1412 A1413 A1414 U1415 C1416 C1417 C1418 C1419 U1420 C1421
Unit 4 G1501 A1502 G1503 G1504 G1505 G1506 A1507 N1508 U1509 G1510 A1511 A1512 A1513 A1514 U1515 C1516 C1517 C1518 C1519 U1520 C1521
Ligands
Unit 9 FOU3001
Unit 10 FOU3003
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany