2I5B - Sequence, Chains, Asymmetric and Biological Units

• Title: THE CRYSTAL STRUCTURE OF AN ADP COMPLEX OF BACILLUS SUBTILIS KINASE PROVIDES EVIDENCE FOR THE PARRALEL EMERGENCE OF ENZY ACTIVITY DURING EVOLUTION
• Keywords: ADP COMPLEX, PDXK, THID, RIBOKINASE SUPERFAMILY, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2I5B	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	A	269	2019	0
2	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	C	265	1986	0
3	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	D	267	2000	0
4	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	B	258	1927	0
5	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	E	267	2000	0
6	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	A	1	0	27
7	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	C	1	0	27
8	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	D	1	0	27
9	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	B	1	0	27
10	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	E	1	0	27
total				1331	9932	135

Proteins

Unit 1	MET 3 HIS 4 LYS 5 ALA 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 SER 14 SER 15 GLY 16 GLY 17 ALA 18 GLY 19 ILE 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LYS 30 ASN 31 VAL 32 TYR 33 GLY 34 MET 35 THR 36 ALA 37 LEU 38 THR 39 VAL 40 ILE 41 VAL 42 ALA 43 MET 44 ASP 45 PRO 46 ASN 47 ASN 48 SER 49 TRP 50 ASN 51 HIS 52 GLN 53 VAL 54 PHE 55 PRO 56 ILE 57 ASP 58 THR 59 ASP 60 THR 61 ILE 62 ARG 63 ALA 64 GLN 65 LEU 66 ALA 67 THR 68 ILE 69 THR 70 ASP 71 GLY 72 ILE 73 GLY 74 VAL 75 ASP 76 ALA 77 MET 78 LYS 79 THR 80 GLY 81 MET 82 LEU 83 PRO 84 THR 85 VAL 86 ASP 87 ILE 88 ILE 89 GLU 90 LEU 91 ALA 92 ALA 93 LYS 94 THR 95 ILE 96 LYS 97 GLU 98 LYS 99 GLN 100 LEU 101 LYS 102 ASN 103 VAL 104 VAL 105 ILE 106 ASP 107 PRO 108 VAL 109 MET 110 VAL 111 CYS 112 LYS 113 GLY 114 ALA 115 ASN 116 GLU 117 VAL 118 LEU 119 TYR 120 PRO 121 GLU 122 HIS 123 ALA 124 GLN 125 ALA 126 LEU 127 ARG 128 GLU 129 GLN 130 LEU 131 ALA 132 PRO 133 LEU 134 ALA 135 THR 136 VAL 137 ILE 138 THR 139 PRO 140 ASN 141 LEU 142 PHE 143 GLU 144 ALA 145 SER 146 GLN 147 LEU 148 SER 149 GLY 150 MET 151 ASP 152 GLU 153 LEU 154 LYS 155 THR 156 VAL 157 ASP 158 ASP 159 MET 160 ILE 161 GLU 162 ALA 163 ALA 164 LYS 165 LYS 166 ILE 167 HIS 168 ALA 169 LEU 170 GLY 171 ALA 172 GLN 173 TYR 174 VAL 175 VAL 176 ILE 177 THR 178 GLY 179 GLY 180 GLY 181 LYS 182 LEU 183 LYS 184 HIS 185 GLU 186 LYS 187 ALA 188 VAL 189 ASP 190 VAL 191 LEU 192 TYR 193 ASP 194 GLY 195 GLU 196 THR 197 ALA 198 GLU 199 VAL 200 LEU 201 GLU 202 SER 203 GLU 204 MET 205 ILE 206 ASP 207 THR 208 PRO 209 TYR 210 THR 211 HIS 212 GLY 213 ALA 214 GLY 215 CYS 216 THR 217 PHE 218 SER 219 ALA 220 ALA 221 VAL 222 THR 223 ALA 224 GLU 225 LEU 226 ALA 227 LYS 228 GLY 229 ALA 230 GLU 231 VAL 232 LYS 233 GLU 234 ALA 235 ILE 236 TYR 237 ALA 238 ALA 239 LYS 240 GLU 241 PHE 242 ILE 243 THR 244 ALA 245 ALA 246 ILE 247 LYS 248 GLU 249 SER 250 PHE 251 PRO 252 LEU 253 ASN 254 GLN 255 TYR 256 VAL 257 GLY 258 PRO 259 THR 260 LYS 261 HIS 262 SER 263 ALA 264 LEU 265 ARG 266 LEU 267 ASN 268 GLN 269 GLN 270 SER 271
Unit 2	MET 3 HIS 4 LYS 5 ALA 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 SER 14 SER 15 GLY 16 GLY 17 ALA 18 GLY 19 ILE 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LYS 30 ASN 31 VAL 32 TYR 33 GLY 34 MET 35 THR 36 ALA 37 LEU 38 THR 39 VAL 40 ILE 41 VAL 42 ALA 43 MET 44 ASP 45 PRO 46 ASN 47 ASN 48 SER 49 TRP 50 ASN 51 HIS 52 GLN 53 VAL 54 PHE 55 PRO 56 ILE 57 ASP 58 THR 59 ASP 60 THR 61 ILE 62 ARG 63 ALA 64 GLN 65 LEU 66 ALA 67 THR 68 ILE 69 THR 70 ASP 71 GLY 72 ILE 73 GLY 74 VAL 75 ASP 76 ALA 77 MET 78 LYS 79 THR 80 GLY 81 MET 82 LEU 83 PRO 84 THR 85 VAL 86 ASP 87 ILE 88 ILE 89 GLU 90 LEU 91 ALA 92 ALA 93 LYS 94 THR 95 ILE 96 LYS 97 GLU 98 LYS 99 GLN 100 LEU 101 LYS 102 ASN 103 VAL 104 VAL 105 ILE 106 ASP 107 PRO 108 VAL 109 MET 110 VAL 111 CYS 112 LYS 113 GLY 114 ALA 115 ASN 116 GLU 117 VAL 118 LEU 119 TYR 120 PRO 121 GLU 122 HIS 123 ALA 124 GLN 125 ALA 126 LEU 127 ARG 128 GLU 129 GLN 130 LEU 131 ALA 132 PRO 133 LEU 134 ALA 135 THR 136 VAL 137 ILE 138 THR 139 PRO 140 ASN 141 LEU 142 PHE 143 GLU 144 ALA 145 SER 146 GLN 147 LEU 148 SER 149 GLY 150 MET 151 ASP 152 GLU 153 LEU 154 LYS 155 THR 156 VAL 157 ASP 158 ASP 159 MET 160 ILE 161 GLU 162 ALA 163 ALA 164 LYS 165 LYS 166 ILE 167 HIS 168 ALA 169 LEU 170 GLY 171 ALA 172 GLN 173 TYR 174 VAL 175 VAL 176 ILE 177 THR 178 GLY 179 GLY 180 GLY 181 LYS 182 LEU 183 LYS 184 HIS 185 GLU 186 LYS 187 ALA 188 VAL 189 ASP 190 VAL 191 LEU 192 TYR 193 ASP 194 GLY 195 GLU 196 THR 197 ALA 198 GLU 199 VAL 200 LEU 201 GLU 202 SER 203 GLU 204 MET 205 ILE 206 ASP 207 THR 208 PRO 209 TYR 210 THR 211 HIS 212 GLY 213 ALA 214 GLY 215 CYS 216 THR 217 PHE 218 SER 219 ALA 220 ALA 221 VAL 222 THR 223 ALA 224 GLU 225 LEU 226 ALA 227 LYS 228 GLY 229 ALA 230 GLU 231 VAL 232 LYS 233 GLU 234 ALA 235 ILE 236 TYR 237 ALA 238 ALA 239 LYS 240 GLU 241 PHE 242 ILE 243 THR 244 ALA 245 ALA 246 ILE 247 LYS 248 GLU 249 SER 250 PHE 251 PRO 252 LEU 253 ASN 254 GLN 255 TYR 256 VAL 257 GLY 258 PRO 259 THR 260 LYS 261 HIS 262 SER 263 ALA 264 LEU 265 ARG 266 LEU 267
Unit 3	SER 2 MET 3 HIS 4 LYS 5 ALA 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 SER 14 SER 15 GLY 16 GLY 17 ALA 18 GLY 19 ILE 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LYS 30 ASN 31 VAL 32 TYR 33 GLY 34 MET 35 THR 36 ALA 37 LEU 38 THR 39 VAL 40 ILE 41 VAL 42 ALA 43 MET 44 ASP 45 PRO 46 ASN 47 ASN 48 SER 49 TRP 50 ASN 51 HIS 52 GLN 53 VAL 54 PHE 55 PRO 56 ILE 57 ASP 58 THR 59 ASP 60 THR 61 ILE 62 ARG 63 ALA 64 GLN 65 LEU 66 ALA 67 THR 68 ILE 69 THR 70 ASP 71 GLY 72 ILE 73 GLY 74 VAL 75 ASP 76 ALA 77 MET 78 LYS 79 THR 80 GLY 81 MET 82 LEU 83 PRO 84 THR 85 VAL 86 ASP 87 ILE 88 ILE 89 GLU 90 LEU 91 ALA 92 ALA 93 LYS 94 THR 95 ILE 96 LYS 97 GLU 98 LYS 99 GLN 100 LEU 101 LYS 102 ASN 103 VAL 104 VAL 105 ILE 106 ASP 107 PRO 108 VAL 109 MET 110 VAL 111 CYS 112 LYS 113 GLY 114 ALA 115 ASN 116 GLU 117 VAL 118 LEU 119 TYR 120 PRO 121 GLU 122 HIS 123 ALA 124 GLN 125 ALA 126 LEU 127 ARG 128 GLU 129 GLN 130 LEU 131 ALA 132 PRO 133 LEU 134 ALA 135 THR 136 VAL 137 ILE 138 THR 139 PRO 140 ASN 141 LEU 142 PHE 143 GLU 144 ALA 145 SER 146 GLN 147 LEU 148 SER 149 GLY 150 MET 151 ASP 152 GLU 153 LEU 154 LYS 155 THR 156 VAL 157 ASP 158 ASP 159 MET 160 ILE 161 GLU 162 ALA 163 ALA 164 LYS 165 LYS 166 ILE 167 HIS 168 ALA 169 LEU 170 GLY 171 ALA 172 GLN 173 TYR 174 VAL 175 VAL 176 ILE 177 THR 178 GLY 179 GLY 180 GLY 181 LYS 182 LEU 183 LYS 184 HIS 185 GLU 186 LYS 187 ALA 188 VAL 189 ASP 190 VAL 191 LEU 192 TYR 193 ASP 194 GLY 195 GLU 196 THR 197 ALA 198 GLU 199 VAL 200 LEU 201 GLU 202 SER 203 GLU 204 MET 205 ILE 206 ASP 207 THR 208 PRO 209 TYR 210 THR 211 HIS 212 GLY 213 ALA 214 GLY 215 CYS 216 THR 217 PHE 218 SER 219 ALA 220 ALA 221 VAL 222 THR 223 ALA 224 GLU 225 LEU 226 ALA 227 LYS 228 GLY 229 ALA 230 GLU 231 VAL 232 LYS 233 GLU 234 ALA 235 ILE 236 TYR 237 ALA 238 ALA 239 LYS 240 GLU 241 PHE 242 ILE 243 THR 244 ALA 245 ALA 246 ILE 247 LYS 248 GLU 249 SER 250 PHE 251 PRO 252 LEU 253 ASN 254 GLN 255 TYR 256 VAL 257 GLY 258 PRO 259 THR 260 LYS 261 HIS 262 SER 263 ALA 264 LEU 265 ARG 266 LEU 267 ASN 268
Unit 4	SER 2 MET 3 HIS 4 LYS 5 ALA 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 SER 14 SER 15 GLY 16 GLY 17 ALA 18 GLY 19 ILE 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LYS 30 ASN 31 VAL 32 TYR 33 GLY 34 MET 35 THR 36 ALA 37 LEU 38 THR 39 VAL 40 ILE 41 VAL 42 ALA 43 MET 44 ASP 45 PRO 46 ASN 47 ASN 48 SER 49 TRP 50 ASN 51 HIS 52 GLN 53 VAL 54 PHE 55 PRO 56 ILE 57 ASP 58 THR 59 ASP 60 THR 61 ILE 62 ARG 63 ALA 64 GLN 65 LEU 66 ALA 67 THR 68 ILE 69 THR 70 ASP 71 GLY 72 ILE 73 GLY 74 VAL 75 ASP 76 ALA 77 MET 78 LYS 79 THR 80 GLY 81 MET 82 LEU 83 PRO 84 THR 85 VAL 86 ASP 87 ILE 88 ILE 89 GLU 90 LEU 91 ALA 92 ALA 93 LYS 94 THR 95 ILE 96 LYS 97 GLU 98 LYS 99 GLN 100 LEU 101 LYS 102 ASN 103 VAL 104 VAL 105 ILE 106 ASP 107 PRO 108 VAL 109 MET 110 TYR 120 PRO 121 GLU 122 HIS 123 ALA 124 GLN 125 ALA 126 LEU 127 ARG 128 GLU 129 GLN 130 LEU 131 ALA 132 PRO 133 LEU 134 ALA 135 THR 136 VAL 137 ILE 138 THR 139 PRO 140 ASN 141 LEU 142 PHE 143 GLU 144 ALA 145 SER 146 GLN 147 LEU 148 SER 149 GLY 150 MET 151 ASP 152 GLU 153 LEU 154 LYS 155 THR 156 VAL 157 ASP 158 ASP 159 MET 160 ILE 161 GLU 162 ALA 163 ALA 164 LYS 165 LYS 166 ILE 167 HIS 168 ALA 169 LEU 170 GLY 171 ALA 172 GLN 173 TYR 174 VAL 175 VAL 176 ILE 177 THR 178 GLY 179 GLY 180 GLY 181 LYS 182 LEU 183 LYS 184 HIS 185 GLU 186 LYS 187 ALA 188 VAL 189 ASP 190 VAL 191 LEU 192 TYR 193 ASP 194 GLY 195 GLU 196 THR 197 ALA 198 GLU 199 VAL 200 LEU 201 GLU 202 SER 203 GLU 204 MET 205 ILE 206 ASP 207 THR 208 PRO 209 TYR 210 THR 211 HIS 212 GLY 213 ALA 214 GLY 215 CYS 216 THR 217 PHE 218 SER 219 ALA 220 ALA 221 VAL 222 THR 223 ALA 224 GLU 225 LEU 226 ALA 227 LYS 228 GLY 229 ALA 230 GLU 231 VAL 232 LYS 233 GLU 234 ALA 235 ILE 236 TYR 237 ALA 238 ALA 239 LYS 240 GLU 241 PHE 242 ILE 243 THR 244 ALA 245 ALA 246 ILE 247 LYS 248 GLU 249 SER 250 PHE 251 PRO 252 LEU 253 ASN 254 GLN 255 TYR 256 VAL 257 GLY 258 PRO 259 THR 260 LYS 261 HIS 262 SER 263 ALA 264 LEU 265 ARG 266 LEU 267 ASN 268
Unit 5	SER 2 MET 3 HIS 4 LYS 5 ALA 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 SER 14 SER 15 GLY 16 GLY 17 ALA 18 GLY 19 ILE 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LYS 30 ASN 31 VAL 32 TYR 33 GLY 34 MET 35 THR 36 ALA 37 LEU 38 THR 39 VAL 40 ILE 41 VAL 42 ALA 43 MET 44 ASP 45 PRO 46 ASN 47 ASN 48 SER 49 TRP 50 ASN 51 HIS 52 GLN 53 VAL 54 PHE 55 PRO 56 ILE 57 ASP 58 THR 59 ASP 60 THR 61 ILE 62 ARG 63 ALA 64 GLN 65 LEU 66 ALA 67 THR 68 ILE 69 THR 70 ASP 71 GLY 72 ILE 73 GLY 74 VAL 75 ASP 76 ALA 77 MET 78 LYS 79 THR 80 GLY 81 MET 82 LEU 83 PRO 84 THR 85 VAL 86 ASP 87 ILE 88 ILE 89 GLU 90 LEU 91 ALA 92 ALA 93 LYS 94 THR 95 ILE 96 LYS 97 GLU 98 LYS 99 GLN 100 LEU 101 LYS 102 ASN 103 VAL 104 VAL 105 ILE 106 ASP 107 PRO 108 VAL 109 MET 110 VAL 111 CYS 112 LYS 113 GLY 114 ALA 115 ASN 116 GLU 117 VAL 118 LEU 119 TYR 120 PRO 121 GLU 122 HIS 123 ALA 124 GLN 125 ALA 126 LEU 127 ARG 128 GLU 129 GLN 130 LEU 131 ALA 132 PRO 133 LEU 134 ALA 135 THR 136 VAL 137 ILE 138 THR 139 PRO 140 ASN 141 LEU 142 PHE 143 GLU 144 ALA 145 SER 146 GLN 147 LEU 148 SER 149 GLY 150 MET 151 ASP 152 GLU 153 LEU 154 LYS 155 THR 156 VAL 157 ASP 158 ASP 159 MET 160 ILE 161 GLU 162 ALA 163 ALA 164 LYS 165 LYS 166 ILE 167 HIS 168 ALA 169 LEU 170 GLY 171 ALA 172 GLN 173 TYR 174 VAL 175 VAL 176 ILE 177 THR 178 GLY 179 GLY 180 GLY 181 LYS 182 LEU 183 LYS 184 HIS 185 GLU 186 LYS 187 ALA 188 VAL 189 ASP 190 VAL 191 LEU 192 TYR 193 ASP 194 GLY 195 GLU 196 THR 197 ALA 198 GLU 199 VAL 200 LEU 201 GLU 202 SER 203 GLU 204 MET 205 ILE 206 ASP 207 THR 208 PRO 209 TYR 210 THR 211 HIS 212 GLY 213 ALA 214 GLY 215 CYS 216 THR 217 PHE 218 SER 219 ALA 220 ALA 221 VAL 222 THR 223 ALA 224 GLU 225 LEU 226 ALA 227 LYS 228 GLY 229 ALA 230 GLU 231 VAL 232 LYS 233 GLU 234 ALA 235 ILE 236 TYR 237 ALA 238 ALA 239 LYS 240 GLU 241 PHE 242 ILE 243 THR 244 ALA 245 ALA 246 ILE 247 LYS 248 GLU 249 SER 250 PHE 251 PRO 252 LEU 253 ASN 254 GLN 255 TYR 256 VAL 257 GLY 258 PRO 259 THR 260 LYS 261 HIS 262 SER 263 ALA 264 LEU 265 ARG 266 LEU 267 ASN 268

Ligands

Unit 6	ADP 301
Unit 7	ADP 401
Unit 8	ADP 501
Unit 9	ADP 601
Unit 10	ADP 701