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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF L-RHAMNOSE ISOMERASE FROM PSEUDOMONAS STUTZERI WITH L-RHAMNOSE
Keywords BETA/ALPHA BARREL, TIM BARREL, HOMO-TETRAMER, METAL-BINDING PROTEIN, ISOMERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2I56     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   L-RHAMNOSE ISOMERASE  A 421 3260 0
2  Protein   L-RHAMNOSE ISOMERASE  B 421 3260 0
3  Protein   L-RHAMNOSE ISOMERASE  C 428 3301 0
4  Protein   L-RHAMNOSE ISOMERASE  D 419 3251 0
5  Ligand   L-RHAMNOSE ISOMERASE  A 3 0 13
6  Ligand   L-RHAMNOSE ISOMERASE  B 3 0 13
7  Ligand   L-RHAMNOSE ISOMERASE  C 3 0 13
8  Ligand   L-RHAMNOSE ISOMERASE  D 3 0 13
9 Water     1364 0 1364
total       3065 13072 1416
Proteins
Unit 1 PHE4 ARG5 ILE6 ALA7 GLN8 ASP9 VAL10 VAL11 ALA12 ARG13 GLU14 ASN15 ASP16 ARG17 ARG18 ALA19 SER20 ALA21 LEU22 LYS23 GLU24 ASP25 TYR26 GLU27 ALA28 LEU29 GLY30 ALA31 ASN32 LEU33 ALA34 ARG35 ARG36 GLY37 VAL38 ASP39 ILE40 GLU41 ALA42 VAL43 THR44 ALA45 LYS46 VAL47 GLU48 LYS49 PHE50 PHE51 VAL52 ALA53 VAL54 PRO55 SER56 TRP57 GLY58 VAL59 GLY60 THR61 GLY62 GLY63 THR64 ARG65 PHE66 ALA67 ARG68 PHE69 PRO70 GLY71 THR72 GLY73 GLU74 PRO75 ARG76 GLY77 ILE78 PHE79 ASP80 LYS81 LEU82 ASP83 ASP84 CYS85 ALA86 VAL87 ILE88 GLN89 GLN90 LEU91 THR92 ARG93 ALA94 THR95 PRO96 ASN97 VAL98 SER99 LEU100 HIS101 ILE102 PRO103 TRP104 ASP105 LYS106 ALA107 ASP108 PRO109 LYS110 GLU111 LEU112 LYS113 ALA114 ARG115 GLY116 ASP117 ALA118 LEU119 GLY120 LEU121 GLY122 PHE123 ASP124 ALA125 MET126 ASN127 SER128 ASN129 THR130 PHE131 SER132 ASP133 ALA134 PRO135 GLY136 GLN137 ALA138 HIS139 SER140 TYR141 LYS142 TYR143 GLY144 SER145 LEU146 SER147 HIS148 THR149 ASN150 ALA151 ALA152 THR153 ARG154 ALA155 GLN156 ALA157 VAL158 GLU159 HIS160 ASN161 LEU162 GLU163 CYS164 ILE165 GLU166 ILE167 GLY168 LYS169 ALA170 ILE171 GLY172 SER173 LYS174 ALA175 LEU176 THR177 VAL178 TRP179 ILE180 GLY181 ASP182 GLY183 SER184 ASN185 PHE186 PRO187 GLY188 GLN189 SER190 ASN191 PHE192 THR193 ARG194 ALA195 PHE196 GLU197 ARG198 TYR199 LEU200 SER201 ALA202 MET203 ALA204 GLU205 ILE206 TYR207 LYS208 GLY209 LEU210 PRO211 ASP212 ASP213 TRP214 LYS215 LEU216 PHE217 SER218 GLU219 HIS220 LYS221 MET222 TYR223 GLU224 PRO225 ALA226 PHE227 TYR228 SER229 THR230 VAL231 VAL232 GLN233 ASP234 TRP235 GLY236 THR237 ASN238 TYR239 LEU240 ILE241 ALA242 GLN243 THR244 LEU245 GLY246 PRO247 LYS248 ALA249 GLN250 CYS251 LEU252 VAL253 ASP254 LEU255 GLY256 HIS257 HIS258 ALA259 PRO260 ASN261 THR262 ASN263 ILE264 GLU265 MET266 ILE267 VAL268 ALA269 ARG270 LEU271 ILE272 GLN273 PHE274 GLY275 LYS276 LEU277 GLY278 GLY279 PHE280 HIS281 PHE282 ASN283 ASP284 SER285 LYS286 TYR287 GLY288 ASP289 ASP290 ASP291 LEU292 ASP293 ALA294 GLY295 ALA296 ILE297 GLU298 PRO299 TYR300 ARG301 LEU302 PHE303 LEU304 VAL305 PHE306 ASN307 GLU308 LEU309 VAL310 ASP311 ALA312 GLU313 ALA314 ARG315 GLY316 VAL317 LYS318 GLY319 PHE320 HIS321 PRO322 ALA323 HIS324 MET325 ILE326 ASP327 GLN328 SER329 HIS330 ASN331 VAL332 THR333 ASP334 PRO335 ILE336 GLU337 SER338 LEU339 ILE340 ASN341 SER342 ALA343 ASN344 GLU345 ILE346 ARG347 ARG348 ALA349 TYR350 ALA351 GLN352 ALA353 LEU354 LEU355 VAL356 ASP357 ARG358 ALA359 ALA360 LEU361 SER362 GLY363 TYR364 GLN365 GLU366 ASP367 ASN368 ASP369 ALA370 LEU371 MET372 ALA373 THR374 GLU375 THR376 LEU377 LYS378 ARG379 ALA380 TYR381 ARG382 THR383 ASP384 VAL385 GLU386 PRO387 ILE388 LEU389 ALA390 GLU391 ALA392 ARG393 ARG394 ARG395 THR396 GLY397 GLY398 ALA399 VAL400 ASP401 PRO402 VAL403 ALA404 THR405 TYR406 ARG407 ALA408 SER409 GLY410 TYR411 ARG412 ALA413 ARG414 VAL415 ALA416 ALA417 GLU418 ARG419 PRO420 ALA421 SER422 VAL423 ALA424
Unit 2 PHE4 ARG5 ILE6 ALA7 GLN8 ASP9 VAL10 VAL11 ALA12 ARG13 GLU14 ASN15 ASP16 ARG17 ARG18 ALA19 SER20 ALA21 LEU22 LYS23 GLU24 ASP25 TYR26 GLU27 ALA28 LEU29 GLY30 ALA31 ASN32 LEU33 ALA34 ARG35 ARG36 GLY37 VAL38 ASP39 ILE40 GLU41 ALA42 VAL43 THR44 ALA45 LYS46 VAL47 GLU48 LYS49 PHE50 PHE51 VAL52 ALA53 VAL54 PRO55 SER56 TRP57 GLY58 VAL59 GLY60 THR61 GLY62 GLY63 THR64 ARG65 PHE66 ALA67 ARG68 PHE69 PRO70 GLY71 THR72 GLY73 GLU74 PRO75 ARG76 GLY77 ILE78 PHE79 ASP80 LYS81 LEU82 ASP83 ASP84 CYS85 ALA86 VAL87 ILE88 GLN89 GLN90 LEU91 THR92 ARG93 ALA94 THR95 PRO96 ASN97 VAL98 SER99 LEU100 HIS101 ILE102 PRO103 TRP104 ASP105 LYS106 ALA107 ASP108 PRO109 LYS110 GLU111 LEU112 LYS113 ALA114 ARG115 GLY116 ASP117 ALA118 LEU119 GLY120 LEU121 GLY122 PHE123 ASP124 ALA125 MET126 ASN127 SER128 ASN129 THR130 PHE131 SER132 ASP133 ALA134 PRO135 GLY136 GLN137 ALA138 HIS139 SER140 TYR141 LYS142 TYR143 GLY144 SER145 LEU146 SER147 HIS148 THR149 ASN150 ALA151 ALA152 THR153 ARG154 ALA155 GLN156 ALA157 VAL158 GLU159 HIS160 ASN161 LEU162 GLU163 CYS164 ILE165 GLU166 ILE167 GLY168 LYS169 ALA170 ILE171 GLY172 SER173 LYS174 ALA175 LEU176 THR177 VAL178 TRP179 ILE180 GLY181 ASP182 GLY183 SER184 ASN185 PHE186 PRO187 GLY188 GLN189 SER190 ASN191 PHE192 THR193 ARG194 ALA195 PHE196 GLU197 ARG198 TYR199 LEU200 SER201 ALA202 MET203 ALA204 GLU205 ILE206 TYR207 LYS208 GLY209 LEU210 PRO211 ASP212 ASP213 TRP214 LYS215 LEU216 PHE217 SER218 GLU219 HIS220 LYS221 MET222 TYR223 GLU224 PRO225 ALA226 PHE227 TYR228 SER229 THR230 VAL231 VAL232 GLN233 ASP234 TRP235 GLY236 THR237 ASN238 TYR239 LEU240 ILE241 ALA242 GLN243 THR244 LEU245 GLY246 PRO247 LYS248 ALA249 GLN250 CYS251 LEU252 VAL253 ASP254 LEU255 GLY256 HIS257 HIS258 ALA259 PRO260 ASN261 THR262 ASN263 ILE264 GLU265 MET266 ILE267 VAL268 ALA269 ARG270 LEU271 ILE272 GLN273 PHE274 GLY275 LYS276 LEU277 GLY278 GLY279 PHE280 HIS281 PHE282 ASN283 ASP284 SER285 LYS286 TYR287 GLY288 ASP289 ASP290 ASP291 LEU292 ASP293 ALA294 GLY295 ALA296 ILE297 GLU298 PRO299 TYR300 ARG301 LEU302 PHE303 LEU304 VAL305 PHE306 ASN307 GLU308 LEU309 VAL310 ASP311 ALA312 GLU313 ALA314 ARG315 GLY316 VAL317 LYS318 GLY319 PHE320 HIS321 PRO322 ALA323 HIS324 MET325 ILE326 ASP327 GLN328 SER329 HIS330 ASN331 VAL332 THR333 ASP334 PRO335 ILE336 GLU337 SER338 LEU339 ILE340 ASN341 SER342 ALA343 ASN344 GLU345 ILE346 ARG347 ARG348 ALA349 TYR350 ALA351 GLN352 ALA353 LEU354 LEU355 VAL356 ASP357 ARG358 ALA359 ALA360 LEU361 SER362 GLY363 TYR364 GLN365 GLU366 ASP367 ASN368 ASP369 ALA370 LEU371 MET372 ALA373 THR374 GLU375 THR376 LEU377 LYS378 ARG379 ALA380 TYR381 ARG382 THR383 ASP384 VAL385 GLU386 PRO387 ILE388 LEU389 ALA390 GLU391 ALA392 ARG393 ARG394 ARG395 THR396 GLY397 GLY398 ALA399 VAL400 ASP401 PRO402 VAL403 ALA404 THR405 TYR406 ARG407 ALA408 SER409 GLY410 TYR411 ARG412 ALA413 ARG414 VAL415 ALA416 ALA417 GLU418 ARG419 PRO420 ALA421 SER422 VAL423 ALA424
Unit 3 GLU3 PHE4 ARG5 ILE6 ALA7 GLN8 ASP9 VAL10 VAL11 ALA12 ARG13 GLU14 ASN15 ASP16 ARG17 ARG18 ALA19 SER20 ALA21 LEU22 LYS23 GLU24 ASP25 TYR26 GLU27 ALA28 LEU29 GLY30 ALA31 ASN32 LEU33 ALA34 ARG35 ARG36 GLY37 VAL38 ASP39 ILE40 GLU41 ALA42 VAL43 THR44 ALA45 LYS46 VAL47 GLU48 LYS49 PHE50 PHE51 VAL52 ALA53 VAL54 PRO55 SER56 TRP57 GLY58 VAL59 GLY60 THR61 GLY62 GLY63 THR64 ARG65 PHE66 ALA67 ARG68 PHE69 PRO70 GLY71 THR72 GLY73 GLU74 PRO75 ARG76 GLY77 ILE78 PHE79 ASP80 LYS81 LEU82 ASP83 ASP84 CYS85 ALA86 VAL87 ILE88 GLN89 GLN90 LEU91 THR92 ARG93 ALA94 THR95 PRO96 ASN97 VAL98 SER99 LEU100 HIS101 ILE102 PRO103 TRP104 ASP105 LYS106 ALA107 ASP108 PRO109 LYS110 GLU111 LEU112 LYS113 ALA114 ARG115 GLY116 ASP117 ALA118 LEU119 GLY120 LEU121 GLY122 PHE123 ASP124 ALA125 MET126 ASN127 SER128 ASN129 THR130 PHE131 SER132 ASP133 ALA134 PRO135 GLY136 GLN137 ALA138 HIS139 SER140 TYR141 LYS142 TYR143 GLY144 SER145 LEU146 SER147 HIS148 THR149 ASN150 ALA151 ALA152 THR153 ARG154 ALA155 GLN156 ALA157 VAL158 GLU159 HIS160 ASN161 LEU162 GLU163 CYS164 ILE165 GLU166 ILE167 GLY168 LYS169 ALA170 ILE171 GLY172 SER173 LYS174 ALA175 LEU176 THR177 VAL178 TRP179 ILE180 GLY181 ASP182 GLY183 SER184 ASN185 PHE186 PRO187 GLY188 GLN189 SER190 ASN191 PHE192 THR193 ARG194 ALA195 PHE196 GLU197 ARG198 TYR199 LEU200 SER201 ALA202 MET203 ALA204 GLU205 ILE206 TYR207 LYS208 GLY209 LEU210 PRO211 ASP212 ASP213 TRP214 LYS215 LEU216 PHE217 SER218 GLU219 HIS220 LYS221 MET222 TYR223 GLU224 PRO225 ALA226 PHE227 TYR228 SER229 THR230 VAL231 VAL232 GLN233 ASP234 TRP235 GLY236 THR237 ASN238 TYR239 LEU240 ILE241 ALA242 GLN243 THR244 LEU245 GLY246 PRO247 LYS248 ALA249 GLN250 CYS251 LEU252 VAL253 ASP254 LEU255 GLY256 HIS257 HIS258 ALA259 PRO260 ASN261 THR262 ASN263 ILE264 GLU265 MET266 ILE267 VAL268 ALA269 ARG270 LEU271 ILE272 GLN273 PHE274 GLY275 LYS276 LEU277 GLY278 GLY279 PHE280 HIS281 PHE282 ASN283 ASP284 SER285 LYS286 TYR287 GLY288 ASP289 ASP290 ASP291 LEU292 ASP293 ALA294 GLY295 ALA296 ILE297 GLU298 PRO299 TYR300 ARG301 LEU302 PHE303 LEU304 VAL305 PHE306 ASN307 GLU308 LEU309 VAL310 ASP311 ALA312 GLU313 ALA314 ARG315 GLY316 VAL317 LYS318 GLY319 PHE320 HIS321 PRO322 ALA323 HIS324 MET325 ILE326 ASP327 GLN328 SER329 HIS330 ASN331 VAL332 THR333 ASP334 PRO335 ILE336 GLU337 SER338 LEU339 ILE340 ASN341 SER342 ALA343 ASN344 GLU345 ILE346 ARG347 ARG348 ALA349 TYR350 ALA351 GLN352 ALA353 LEU354 LEU355 VAL356 ASP357 ARG358 ALA359 ALA360 LEU361 SER362 GLY363 TYR364 GLN365 GLU366 ASP367 ASN368 ASP369 ALA370 LEU371 MET372 ALA373 THR374 GLU375 THR376 LEU377 LYS378 ARG379 ALA380 TYR381 ARG382 THR383 ASP384 VAL385 GLU386 PRO387 ILE388 LEU389 ALA390 GLU391 ALA392 ARG393 ARG394 ARG395 THR396 GLY397 GLY398 ALA399 VAL400 ASP401 PRO402 VAL403 ALA404 THR405 TYR406 ARG407 ALA408 SER409 GLY410 TYR411 ARG412 ALA413 ARG414 VAL415 ALA416 ALA417 GLU418 ARG419 PRO420 ALA421 SER422 VAL423 ALA424 GLY425 GLY426 GLY427 GLY428 ILE429 ILE430
Unit 4 GLU3 PHE4 ARG5 ILE6 ALA7 GLN8 ASP9 VAL10 VAL11 ALA12 ARG13 GLU14 ASN15 ASP16 ARG17 ARG18 ALA19 SER20 ALA21 LEU22 LYS23 GLU24 ASP25 TYR26 GLU27 ALA28 LEU29 GLY30 ALA31 ASN32 LEU33 ALA34 ARG35 ARG36 GLY37 VAL38 ASP39 ILE40 GLU41 ALA42 VAL43 THR44 ALA45 LYS46 VAL47 GLU48 LYS49 PHE50 PHE51 VAL52 ALA53 VAL54 PRO55 SER56 TRP57 GLY58 VAL59 GLY60 THR61 GLY62 GLY63 THR64 ARG65 PHE66 ALA67 ARG68 PHE69 PRO70 GLY71 THR72 GLY73 GLU74 PRO75 ARG76 GLY77 ILE78 PHE79 ASP80 LYS81 LEU82 ASP83 ASP84 CYS85 ALA86 VAL87 ILE88 GLN89 GLN90 LEU91 THR92 ARG93 ALA94 THR95 PRO96 ASN97 VAL98 SER99 LEU100 HIS101 ILE102 PRO103 TRP104 ASP105 LYS106 ALA107 ASP108 PRO109 LYS110 GLU111 LEU112 LYS113 ALA114 ARG115 GLY116 ASP117 ALA118 LEU119 GLY120 LEU121 GLY122 PHE123 ASP124 ALA125 MET126 ASN127 SER128 ASN129 THR130 PHE131 SER132 ASP133 ALA134 PRO135 GLY136 GLN137 ALA138 HIS139 SER140 TYR141 LYS142 TYR143 GLY144 SER145 LEU146 SER147 HIS148 THR149 ASN150 ALA151 ALA152 THR153 ARG154 ALA155 GLN156 ALA157 VAL158 GLU159 HIS160 ASN161 LEU162 GLU163 CYS164 ILE165 GLU166 ILE167 GLY168 LYS169 ALA170 ILE171 GLY172 SER173 LYS174 ALA175 LEU176 THR177 VAL178 TRP179 ILE180 GLY181 ASP182 GLY183 SER184 ASN185 PHE186 PRO187 GLY188 GLN189 SER190 ASN191 PHE192 THR193 ARG194 ALA195 PHE196 GLU197 ARG198 TYR199 LEU200 SER201 ALA202 MET203 ALA204 GLU205 ILE206 TYR207 LYS208 GLY209 LEU210 PRO211 ASP212 ASP213 TRP214 LYS215 LEU216 PHE217 SER218 GLU219 HIS220 LYS221 MET222 TYR223 GLU224 PRO225 ALA226 PHE227 TYR228 SER229 THR230 VAL231 VAL232 GLN233 ASP234 TRP235 GLY236 THR237 ASN238 TYR239 LEU240 ILE241 ALA242 GLN243 THR244 LEU245 GLY246 PRO247 LYS248 ALA249 GLN250 CYS251 LEU252 VAL253 ASP254 LEU255 GLY256 HIS257 HIS258 ALA259 PRO260 ASN261 THR262 ASN263 ILE264 GLU265 MET266 ILE267 VAL268 ALA269 ARG270 LEU271 ILE272 GLN273 PHE274 GLY275 LYS276 LEU277 GLY278 GLY279 PHE280 HIS281 PHE282 ASN283 ASP284 SER285 LYS286 TYR287 GLY288 ASP289 ASP290 ASP291 LEU292 ASP293 ALA294 GLY295 ALA296 ILE297 GLU298 PRO299 TYR300 ARG301 LEU302 PHE303 LEU304 VAL305 PHE306 ASN307 GLU308 LEU309 VAL310 ASP311 ALA312 GLU313 ALA314 ARG315 GLY316 VAL317 LYS318 GLY319 PHE320 HIS321 PRO322 ALA323 HIS324 MET325 ILE326 ASP327 GLN328 SER329 HIS330 ASN331 VAL332 THR333 ASP334 PRO335 ILE336 GLU337 SER338 LEU339 ILE340 ASN341 SER342 ALA343 ASN344 GLU345 ILE346 ARG347 ARG348 ALA349 TYR350 ALA351 GLN352 ALA353 LEU354 LEU355 VAL356 ASP357 ARG358 ALA359 ALA360 LEU361 SER362 GLY363 TYR364 GLN365 GLU366 ASP367 ASN368 ASP369 ALA370 LEU371 MET372 ALA373 THR374 GLU375 THR376 LEU377 LYS378 ARG379 ALA380 TYR381 ARG382 THR383 ASP384 VAL385 GLU386 PRO387 ILE388 LEU389 ALA390 GLU391 ALA392 ARG393 ARG394 ARG395 THR396 GLY397 GLY398 ALA399 VAL400 ASP401 PRO402 VAL403 ALA404 THR405 TYR406 ARG407 ALA408 SER409 GLY410 TYR411 ARG412 ALA413 ARG414 VAL415 ALA416 ALA417 GLU418 ARG419 PRO420 ALA421
Ligands
Unit 5 ZN501 ZN502 RNS2001
Unit 6 ZN503 ZN504 RNS2002
Unit 7 ZN505 ZN506 RNS2003
Unit 8 ZN507 ZN508 RNS2004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany