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Title | CRYSTALLOGRAPHIC MODEL OF LUMIRHODOPSIN | |
Keywords | G PROTEIN-COUPLED RECEPTOR, VISUAL PIGMENT, SIGNALING PROTEI | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2HPY | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | RHODOPSIN | A | 349 | 2746 | 3 |
2 | Protein | RHODOPSIN | B | 349 | 2746 | 3 |
3 | Ligand | C | 3 | 0 | 39 | |
4 | Ligand | D | 2 | 0 | 28 | |
5 | Ligand | E | 4 | 0 | 50 | |
6 | Ligand | F | 2 | 0 | 28 | |
7 | Ligand | RHODOPSIN | A | 13 | 0 | 115 |
8 | Ligand | RHODOPSIN | B | 13 | 0 | 124 |
9 | Water | 66 | 0 | 66 | ||
total | 801 | 5492 | 456 |
Unit 1 | ACE0 MET1 ASN2 GLY3 THR4 GLU5 GLY6 PRO7 ASN8 PHE9 TYR10 VAL11 PRO12 PHE13 SER14 ASN15 LYS16 THR17 GLY18 VAL19 VAL20 ARG21 SER22 PRO23 PHE24 GLU25 ALA26 PRO27 GLN28 TYR29 TYR30 LEU31 ALA32 GLU33 PRO34 TRP35 GLN36 PHE37 SER38 MET39 LEU40 ALA41 ALA42 TYR43 MET44 PHE45 LEU46 LEU47 ILE48 MET49 LEU50 GLY51 PHE52 PRO53 ILE54 ASN55 PHE56 LEU57 THR58 LEU59 TYR60 VAL61 THR62 VAL63 GLN64 HIS65 LYS66 LYS67 LEU68 ARG69 THR70 PRO71 LEU72 ASN73 TYR74 ILE75 LEU76 LEU77 ASN78 LEU79 ALA80 VAL81 ALA82 ASP83 LEU84 PHE85 MET86 VAL87 PHE88 GLY89 GLY90 PHE91 THR92 THR93 THR94 LEU95 TYR96 THR97 SER98 LEU99 HIS100 GLY101 TYR102 PHE103 VAL104 PHE105 GLY106 PRO107 THR108 GLY109 CYS110 ASN111 LEU112 GLU113 GLY114 PHE115 PHE116 ALA117 THR118 LEU119 GLY120 GLY121 GLU122 ILE123 ALA124 LEU125 TRP126 SER127 LEU128 VAL129 VAL130 LEU131 ALA132 ILE133 GLU134 ARG135 TYR136 VAL137 VAL138 VAL139 CYS140 LYS141 PRO142 MET143 SER144 ASN145 PHE146 ARG147 PHE148 GLY149 GLU150 ASN151 HIS152 ALA153 ILE154 MET155 GLY156 VAL157 ALA158 PHE159 THR160 TRP161 VAL162 MET163 ALA164 LEU165 ALA166 CYS167 ALA168 ALA169 PRO170 PRO171 LEU172 VAL173 GLY174 TRP175 SER176 ARG177 TYR178 ILE179 PRO180 GLU181 GLY182 MET183 GLN184 CYS185 SER186 CYS187 GLY188 ILE189 ASP190 TYR191 TYR192 THR193 PRO194 HIS195 GLU196 GLU197 THR198 ASN199 ASN200 GLU201 SER202 PHE203 VAL204 ILE205 TYR206 MET207 PHE208 VAL209 VAL210 HIS211 PHE212 ILE213 ILE214 PRO215 LEU216 ILE217 VAL218 ILE219 PHE220 PHE221 CYS222 TYR223 GLY224 GLN225 LEU226 VAL227 PHE228 THR229 VAL230 LYS231 GLU232 ALA233 ALA234 ALA235 GLN236 GLN237 GLN238 GLU239 SER240 ALA241 THR242 THR243 GLN244 LYS245 ALA246 GLU247 LYS248 GLU249 VAL250 THR251 ARG252 MET253 VAL254 ILE255 ILE256 MET257 VAL258 ILE259 ALA260 PHE261 LEU262 ILE263 CYS264 TRP265 LEU266 PRO267 TYR268 ALA269 GLY270 VAL271 ALA272 PHE273 TYR274 ILE275 PHE276 THR277 HIS278 GLN279 GLY280 SER281 ASP282 PHE283 GLY284 PRO285 ILE286 PHE287 MET288 THR289 ILE290 PRO291 ALA292 PHE293 PHE294 ALA295 LYS296 THR297 SER298 ALA299 VAL300 TYR301 ASN302 PRO303 VAL304 ILE305 TYR306 ILE307 MET308 MET309 ASN310 LYS311 GLN312 PHE313 ARG314 ASN315 CYS316 MET317 VAL318 THR319 THR320 LEU321 CYS322 CYS323 GLY324 LYS325 ASN326 PRO327 LEU328 GLY329 ASP330 ASP331 GLU332 ALA333 SER334 THR335 THR336 VAL337 SER338 LYS339 THR340 GLU341 THR342 SER343 GLN344 VAL345 ALA346 PRO347 ALA348 |
Unit 2 | ACE0 MET1 ASN2 GLY3 THR4 GLU5 GLY6 PRO7 ASN8 PHE9 TYR10 VAL11 PRO12 PHE13 SER14 ASN15 LYS16 THR17 GLY18 VAL19 VAL20 ARG21 SER22 PRO23 PHE24 GLU25 ALA26 PRO27 GLN28 TYR29 TYR30 LEU31 ALA32 GLU33 PRO34 TRP35 GLN36 PHE37 SER38 MET39 LEU40 ALA41 ALA42 TYR43 MET44 PHE45 LEU46 LEU47 ILE48 MET49 LEU50 GLY51 PHE52 PRO53 ILE54 ASN55 PHE56 LEU57 THR58 LEU59 TYR60 VAL61 THR62 VAL63 GLN64 HIS65 LYS66 LYS67 LEU68 ARG69 THR70 PRO71 LEU72 ASN73 TYR74 ILE75 LEU76 LEU77 ASN78 LEU79 ALA80 VAL81 ALA82 ASP83 LEU84 PHE85 MET86 VAL87 PHE88 GLY89 GLY90 PHE91 THR92 THR93 THR94 LEU95 TYR96 THR97 SER98 LEU99 HIS100 GLY101 TYR102 PHE103 VAL104 PHE105 GLY106 PRO107 THR108 GLY109 CYS110 ASN111 LEU112 GLU113 GLY114 PHE115 PHE116 ALA117 THR118 LEU119 GLY120 GLY121 GLU122 ILE123 ALA124 LEU125 TRP126 SER127 LEU128 VAL129 VAL130 LEU131 ALA132 ILE133 GLU134 ARG135 TYR136 VAL137 VAL138 VAL139 CYS140 LYS141 PRO142 MET143 SER144 ASN145 PHE146 ARG147 PHE148 GLY149 GLU150 ASN151 HIS152 ALA153 ILE154 MET155 GLY156 VAL157 ALA158 PHE159 THR160 TRP161 VAL162 MET163 ALA164 LEU165 ALA166 CYS167 ALA168 ALA169 PRO170 PRO171 LEU172 VAL173 GLY174 TRP175 SER176 ARG177 TYR178 ILE179 PRO180 GLU181 GLY182 MET183 GLN184 CYS185 SER186 CYS187 GLY188 ILE189 ASP190 TYR191 TYR192 THR193 PRO194 HIS195 GLU196 GLU197 THR198 ASN199 ASN200 GLU201 SER202 PHE203 VAL204 ILE205 TYR206 MET207 PHE208 VAL209 VAL210 HIS211 PHE212 ILE213 ILE214 PRO215 LEU216 ILE217 VAL218 ILE219 PHE220 PHE221 CYS222 TYR223 GLY224 GLN225 LEU226 VAL227 PHE228 THR229 VAL230 LYS231 GLU232 ALA233 ALA234 ALA235 GLN236 GLN237 GLN238 GLU239 SER240 ALA241 THR242 THR243 GLN244 LYS245 ALA246 GLU247 LYS248 GLU249 VAL250 THR251 ARG252 MET253 VAL254 ILE255 ILE256 MET257 VAL258 ILE259 ALA260 PHE261 LEU262 ILE263 CYS264 TRP265 LEU266 PRO267 TYR268 ALA269 GLY270 VAL271 ALA272 PHE273 TYR274 ILE275 PHE276 THR277 HIS278 GLN279 GLY280 SER281 ASP282 PHE283 GLY284 PRO285 ILE286 PHE287 MET288 THR289 ILE290 PRO291 ALA292 PHE293 PHE294 ALA295 LYS296 THR297 SER298 ALA299 VAL300 TYR301 ASN302 PRO303 VAL304 ILE305 TYR306 ILE307 MET308 MET309 ASN310 LYS311 GLN312 PHE313 ARG314 ASN315 CYS316 MET317 VAL318 THR319 THR320 LEU321 CYS322 CYS323 GLY324 LYS325 ASN326 PRO327 LEU328 GLY329 ASP330 ASP331 GLU332 ALA333 SER334 THR335 THR336 VAL337 SER338 LYS339 THR340 GLU341 THR342 SER343 GLN344 VAL345 ALA346 PRO347 ALA348 |
Unit 3 | NAG1 NAG2 MAN3 |
Unit 4 | NAG1 NAG2 |
Unit 5 | NAG1 NAG2 BMA3 BMA4 |
Unit 6 | NAG1 NAG2 |
Unit 7 | HG901 HG903 HG905 ZN957 ZN959 ZN962 RET1296 PLM1322 PLM1323 PLM1410 HTG1507 HTG1508 ZN2011 |
Unit 8 | HG902 HG904 HG906 ZN956 ZN958 ZN963 RET1296 PLM1322 PLM1323 HTO1401 PLM1407 HTG1506 HTG1509 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |