2HK9 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE FROM AQUIFEX AE COMPLEX WITH SHIKIMATE AND NADP+ AT 2.2 ANGSTROM RESOLUTION
• Keywords: SHIKIMATE PATHWAY, SHIKIMATE DEHYDROGENASE, DRUG DESIGN, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2HK9	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SHIKIMATE DEHYDROGENASE	A	269	2127	0
2	Protein	SHIKIMATE DEHYDROGENASE	B	267	2111	0
3	Protein	SHIKIMATE DEHYDROGENASE	C	266	2103	0
4	Protein	SHIKIMATE DEHYDROGENASE	D	266	2103	0
5	Ligand	SHIKIMATE DEHYDROGENASE	A	2	0	43
6	Ligand	SHIKIMATE DEHYDROGENASE	B	2	0	60
7	Ligand	SHIKIMATE DEHYDROGENASE	C	2	0	60
8	Ligand	SHIKIMATE DEHYDROGENASE	D	2	0	60
9	Water			204	0	204
total				1280	8444	427

Proteins

Unit 1	MET 1 ILE 2 ASN 3 ALA 4 GLN 5 THR 6 GLN 7 LEU 8 TYR 9 GLY 10 VAL 11 ILE 12 GLY 13 PHE 14 PRO 15 VAL 16 LYS 17 HIS 18 SER 19 LEU 20 SER 21 PRO 22 VAL 23 PHE 24 GLN 25 ASN 26 ALA 27 LEU 28 ILE 29 ARG 30 TYR 31 ALA 32 GLY 33 LEU 34 ASN 35 ALA 36 VAL 37 TYR 38 LEU 39 ALA 40 PHE 41 GLU 42 ILE 43 ASN 44 PRO 45 GLU 46 GLU 47 LEU 48 LYS 49 LYS 50 ALA 51 PHE 52 GLU 53 GLY 54 PHE 55 LYS 56 ALA 57 LEU 58 LYS 59 VAL 60 LYS 61 GLY 62 ILE 63 ASN 64 VAL 65 THR 66 VAL 67 PRO 68 PHE 69 LYS 70 GLU 71 GLU 72 ILE 73 ILE 74 PRO 75 LEU 76 LEU 77 ASP 78 TYR 79 VAL 80 GLU 81 ASP 82 THR 83 ALA 84 LYS 85 GLU 86 ILE 87 GLY 88 ALA 89 VAL 90 ASN 91 THR 92 VAL 93 LYS 94 PHE 95 GLU 96 ASN 97 GLY 98 LYS 99 ALA 100 TYR 101 GLY 102 TYR 103 ASN 104 THR 105 ASP 106 TRP 107 ILE 108 GLY 109 PHE 110 LEU 111 LYS 112 SER 113 LEU 114 LYS 115 SER 116 LEU 117 ILE 118 PRO 119 GLU 120 VAL 121 LYS 122 GLU 123 LYS 124 SER 125 ILE 126 LEU 127 VAL 128 LEU 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 SER 135 ARG 136 ALA 137 VAL 138 ILE 139 TYR 140 ALA 141 LEU 142 VAL 143 LYS 144 GLU 145 GLY 146 ALA 147 LYS 148 VAL 149 PHE 150 LEU 151 TRP 152 ASN 153 ARG 154 THR 155 LYS 156 GLU 157 LYS 158 ALA 159 ILE 160 LYS 161 LEU 162 ALA 163 GLN 164 LYS 165 PHE 166 PRO 167 LEU 168 GLU 169 VAL 170 VAL 171 ASN 172 SER 173 PRO 174 GLU 175 GLU 176 VAL 177 ILE 178 ASP 179 LYS 180 VAL 181 GLN 182 VAL 183 ILE 184 VAL 185 ASN 186 THR 187 THR 188 SER 189 VAL 190 GLY 191 LEU 192 LYS 193 ASP 194 GLU 195 ASP 196 PRO 197 GLU 198 ILE 199 PHE 200 ASN 201 TYR 202 ASP 203 LEU 204 ILE 205 LYS 206 LYS 207 ASP 208 HIS 209 VAL 210 VAL 211 VAL 212 ASP 213 ILE 214 ILE 215 TYR 216 LYS 217 GLU 218 THR 219 LYS 220 LEU 221 LEU 222 LYS 223 LYS 224 ALA 225 LYS 226 GLU 227 LYS 228 GLY 229 ALA 230 LYS 231 LEU 232 LEU 233 ASP 234 GLY 235 LEU 236 PRO 237 MET 238 LEU 239 LEU 240 TRP 241 GLN 242 GLY 243 ILE 244 GLU 245 ALA 246 PHE 247 LYS 248 ILE 249 TRP 250 ASN 251 GLY 252 CYS 253 GLU 254 VAL 255 PRO 256 TYR 257 SER 258 VAL 259 ALA 260 GLU 261 ARG 262 SER 263 VAL 264 ARG 265 ASP 266 LEU 267 ARG 268 GLY 269
Unit 2	MET 1 ILE 2 ASN 3 ALA 4 GLN 5 THR 6 GLN 7 LEU 8 TYR 9 GLY 10 VAL 11 ILE 12 GLY 13 PHE 14 PRO 15 VAL 16 LYS 17 HIS 18 SER 19 LEU 20 SER 21 PRO 22 VAL 23 PHE 24 GLN 25 ASN 26 ALA 27 LEU 28 ILE 29 ARG 30 TYR 31 ALA 32 GLY 33 LEU 34 ASN 35 ALA 36 VAL 37 TYR 38 LEU 39 ALA 40 PHE 41 GLU 42 ILE 43 ASN 44 PRO 45 GLU 46 GLU 47 LEU 48 LYS 49 LYS 50 ALA 51 PHE 52 GLU 53 GLY 54 PHE 55 LYS 56 ALA 57 LEU 58 LYS 59 VAL 60 LYS 61 GLY 62 ILE 63 ASN 64 VAL 65 THR 66 VAL 67 PRO 68 PHE 69 LYS 70 GLU 71 GLU 72 ILE 73 ILE 74 PRO 75 LEU 76 LEU 77 ASP 78 TYR 79 VAL 80 GLU 81 ASP 82 THR 83 ALA 84 LYS 85 GLU 86 ILE 87 GLY 88 ALA 89 VAL 90 ASN 91 THR 92 VAL 93 LYS 94 PHE 95 GLU 96 ASN 97 GLY 98 LYS 99 ALA 100 TYR 101 GLY 102 TYR 103 ASN 104 THR 105 ASP 106 TRP 107 ILE 108 GLY 109 PHE 110 LEU 111 LYS 112 SER 113 LEU 114 LYS 115 SER 116 LEU 117 ILE 118 PRO 119 GLU 120 VAL 121 LYS 122 GLU 123 LYS 124 SER 125 ILE 126 LEU 127 VAL 128 LEU 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 SER 135 ARG 136 ALA 137 VAL 138 ILE 139 TYR 140 ALA 141 LEU 142 VAL 143 LYS 144 GLU 145 GLY 146 ALA 147 LYS 148 VAL 149 PHE 150 LEU 151 TRP 152 ASN 153 ARG 154 THR 155 LYS 156 GLU 157 LYS 158 ALA 159 ILE 160 LYS 161 LEU 162 ALA 163 GLN 164 LYS 165 PHE 166 PRO 167 LEU 168 GLU 169 VAL 170 VAL 171 ASN 172 SER 173 PRO 174 GLU 175 GLU 176 VAL 177 ILE 178 ASP 179 LYS 180 VAL 181 GLN 182 VAL 183 ILE 184 VAL 185 ASN 186 THR 187 THR 188 SER 189 VAL 190 GLY 191 LEU 192 LYS 193 ASP 194 GLU 195 ASP 196 PRO 197 GLU 198 ILE 199 PHE 200 ASN 201 TYR 202 ASP 203 LEU 204 ILE 205 LYS 206 LYS 207 ASP 208 HIS 209 VAL 210 VAL 211 VAL 212 ASP 213 ILE 214 ILE 215 TYR 216 LYS 217 GLU 218 THR 219 LYS 220 LEU 221 LEU 222 LYS 223 LYS 224 ALA 225 LYS 226 GLU 227 LYS 228 GLY 229 ALA 230 LYS 231 LEU 232 LEU 233 ASP 234 GLY 235 LEU 236 PRO 237 MET 238 LEU 239 LEU 240 TRP 241 GLN 242 GLY 243 ILE 244 GLU 245 ALA 246 PHE 247 LYS 248 ILE 249 TRP 250 ASN 251 GLY 252 CYS 253 GLU 254 VAL 255 PRO 256 TYR 257 SER 258 VAL 259 ALA 260 GLU 261 ARG 262 SER 263 VAL 264 ARG 265 ASP 266 LEU 267
Unit 3	MET 1 ILE 2 ASN 3 ALA 4 GLN 5 THR 6 GLN 7 LEU 8 TYR 9 GLY 10 VAL 11 ILE 12 GLY 13 PHE 14 PRO 15 VAL 16 LYS 17 HIS 18 SER 19 LEU 20 SER 21 PRO 22 VAL 23 PHE 24 GLN 25 ASN 26 ALA 27 LEU 28 ILE 29 ARG 30 TYR 31 ALA 32 GLY 33 LEU 34 ASN 35 ALA 36 VAL 37 TYR 38 LEU 39 ALA 40 PHE 41 GLU 42 ILE 43 ASN 44 PRO 45 GLU 46 GLU 47 LEU 48 LYS 49 LYS 50 ALA 51 PHE 52 GLU 53 GLY 54 PHE 55 LYS 56 ALA 57 LEU 58 LYS 59 VAL 60 LYS 61 GLY 62 ILE 63 ASN 64 VAL 65 THR 66 VAL 67 PRO 68 PHE 69 LYS 70 GLU 71 GLU 72 ILE 73 ILE 74 PRO 75 LEU 76 LEU 77 ASP 78 TYR 79 VAL 80 GLU 81 ASP 82 THR 83 ALA 84 LYS 85 GLU 86 ILE 87 GLY 88 ALA 89 VAL 90 ASN 91 THR 92 VAL 93 LYS 94 PHE 95 GLU 96 ASN 97 GLY 98 LYS 99 ALA 100 TYR 101 GLY 102 TYR 103 ASN 104 THR 105 ASP 106 TRP 107 ILE 108 GLY 109 PHE 110 LEU 111 LYS 112 SER 113 LEU 114 LYS 115 SER 116 LEU 117 ILE 118 PRO 119 GLU 120 VAL 121 LYS 122 GLU 123 LYS 124 SER 125 ILE 126 LEU 127 VAL 128 LEU 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 SER 135 ARG 136 ALA 137 VAL 138 ILE 139 TYR 140 ALA 141 LEU 142 VAL 143 LYS 144 GLU 145 GLY 146 ALA 147 LYS 148 VAL 149 PHE 150 LEU 151 TRP 152 ASN 153 ARG 154 THR 155 LYS 156 GLU 157 LYS 158 ALA 159 ILE 160 LYS 161 LEU 162 ALA 163 GLN 164 LYS 165 PHE 166 PRO 167 LEU 168 GLU 169 VAL 170 VAL 171 ASN 172 SER 173 PRO 174 GLU 175 GLU 176 VAL 177 ILE 178 ASP 179 LYS 180 VAL 181 GLN 182 VAL 183 ILE 184 VAL 185 ASN 186 THR 187 THR 188 SER 189 VAL 190 GLY 191 LEU 192 LYS 193 ASP 194 GLU 195 ASP 196 PRO 197 GLU 198 ILE 199 PHE 200 ASN 201 TYR 202 ASP 203 LEU 204 ILE 205 LYS 206 LYS 207 ASP 208 HIS 209 VAL 210 VAL 211 VAL 212 ASP 213 ILE 214 ILE 215 TYR 216 LYS 217 GLU 218 THR 219 LYS 220 LEU 221 LEU 222 LYS 223 LYS 224 ALA 225 LYS 226 GLU 227 LYS 228 GLY 229 ALA 230 LYS 231 LEU 232 LEU 233 ASP 234 GLY 235 LEU 236 PRO 237 MET 238 LEU 239 LEU 240 TRP 241 GLN 242 GLY 243 ILE 244 GLU 245 ALA 246 PHE 247 LYS 248 ILE 249 TRP 250 ASN 251 GLY 252 CYS 253 GLU 254 VAL 255 PRO 256 TYR 257 SER 258 VAL 259 ALA 260 GLU 261 ARG 262 SER 263 VAL 264 ARG 265 ASP 266
Unit 4	MET 1 ILE 2 ASN 3 ALA 4 GLN 5 THR 6 GLN 7 LEU 8 TYR 9 GLY 10 VAL 11 ILE 12 GLY 13 PHE 14 PRO 15 VAL 16 LYS 17 HIS 18 SER 19 LEU 20 SER 21 PRO 22 VAL 23 PHE 24 GLN 25 ASN 26 ALA 27 LEU 28 ILE 29 ARG 30 TYR 31 ALA 32 GLY 33 LEU 34 ASN 35 ALA 36 VAL 37 TYR 38 LEU 39 ALA 40 PHE 41 GLU 42 ILE 43 ASN 44 PRO 45 GLU 46 GLU 47 LEU 48 LYS 49 LYS 50 ALA 51 PHE 52 GLU 53 GLY 54 PHE 55 LYS 56 ALA 57 LEU 58 LYS 59 VAL 60 LYS 61 GLY 62 ILE 63 ASN 64 VAL 65 THR 66 VAL 67 PRO 68 PHE 69 LYS 70 GLU 71 GLU 72 ILE 73 ILE 74 PRO 75 LEU 76 LEU 77 ASP 78 TYR 79 VAL 80 GLU 81 ASP 82 THR 83 ALA 84 LYS 85 GLU 86 ILE 87 GLY 88 ALA 89 VAL 90 ASN 91 THR 92 VAL 93 LYS 94 PHE 95 GLU 96 ASN 97 GLY 98 LYS 99 ALA 100 TYR 101 GLY 102 TYR 103 ASN 104 THR 105 ASP 106 TRP 107 ILE 108 GLY 109 PHE 110 LEU 111 LYS 112 SER 113 LEU 114 LYS 115 SER 116 LEU 117 ILE 118 PRO 119 GLU 120 VAL 121 LYS 122 GLU 123 LYS 124 SER 125 ILE 126 LEU 127 VAL 128 LEU 129 GLY 130 ALA 131 GLY 132 GLY 133 ALA 134 SER 135 ARG 136 ALA 137 VAL 138 ILE 139 TYR 140 ALA 141 LEU 142 VAL 143 LYS 144 GLU 145 GLY 146 ALA 147 LYS 148 VAL 149 PHE 150 LEU 151 TRP 152 ASN 153 ARG 154 THR 155 LYS 156 GLU 157 LYS 158 ALA 159 ILE 160 LYS 161 LEU 162 ALA 163 GLN 164 LYS 165 PHE 166 PRO 167 LEU 168 GLU 169 VAL 170 VAL 171 ASN 172 SER 173 PRO 174 GLU 175 GLU 176 VAL 177 ILE 178 ASP 179 LYS 180 VAL 181 GLN 182 VAL 183 ILE 184 VAL 185 ASN 186 THR 187 THR 188 SER 189 VAL 190 GLY 191 LEU 192 LYS 193 ASP 194 GLU 195 ASP 196 PRO 197 GLU 198 ILE 199 PHE 200 ASN 201 TYR 202 ASP 203 LEU 204 ILE 205 LYS 206 LYS 207 ASP 208 HIS 209 VAL 210 VAL 211 VAL 212 ASP 213 ILE 214 ILE 215 TYR 216 LYS 217 GLU 218 THR 219 LYS 220 LEU 221 LEU 222 LYS 223 LYS 224 ALA 225 LYS 226 GLU 227 LYS 228 GLY 229 ALA 230 LYS 231 LEU 232 LEU 233 ASP 234 GLY 235 LEU 236 PRO 237 MET 238 LEU 239 LEU 240 TRP 241 GLN 242 GLY 243 ILE 244 GLU 245 ALA 246 PHE 247 LYS 248 ILE 249 TRP 250 ASN 251 GLY 252 CYS 253 GLU 254 VAL 255 PRO 256 TYR 257 SER 258 VAL 259 ALA 260 GLU 261 ARG 262 SER 263 VAL 264 ARG 265 ASP 266

Ligands

Unit 5	ATR 1101 SKM 1102
Unit 6	NAP 1201 SKM 1202
Unit 7	NAP 1301 SKM 1302
Unit 8	NAP 1401 SKM 1402