2HD0 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE CATALYTIC DOMAIN OF HEPATITIS C VIRUS NS2
• Keywords: CYSTEINE PROTEASE, DIMER, COMPOSITE ACTIVE SITE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2HD0	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROTEASE NS2-3 (P23)	A	127	974	0
2	Protein	PROTEASE NS2-3 (P23)	B	127	958	0
3	Protein	PROTEASE NS2-3 (P23)	C	127	966	0
4	Protein	PROTEASE NS2-3 (P23)	D	127	958	0
5	Protein	PROTEASE NS2-3 (P23)	E	127	964	0
6	Protein	PROTEASE NS2-3 (P23)	F	127	950	0
7	Protein	PROTEASE NS2-3 (P23)	G	127	951	0
8	Protein	PROTEASE NS2-3 (P23)	H	128	958	0
9	Protein	PROTEASE NS2-3 (P23)	I	127	952	0
10	Protein	PROTEASE NS2-3 (P23)	J	127	970	0
11	Protein	PROTEASE NS2-3 (P23)	K	127	948	0
12	Protein	PROTEASE NS2-3 (P23)	L	127	952	0
13	Ligand	PROTEASE NS2-3 (P23)	A	3	0	60
14	Ligand	PROTEASE NS2-3 (P23)	B	1	0	20
15	Ligand	PROTEASE NS2-3 (P23)	C	1	0	20
16	Ligand	PROTEASE NS2-3 (P23)	F	2	0	40
17	Ligand	PROTEASE NS2-3 (P23)	H	1	0	20
18	Ligand	PROTEASE NS2-3 (P23)	I	2	0	53
19	Ligand	PROTEASE NS2-3 (P23)	J	1	0	20
20	Ligand	PROTEASE NS2-3 (P23)	K	1	0	20
21	Water			176	0	176
total				1713	11501	429

Proteins

Unit 1	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 2	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 3	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 4	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 5	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 6	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 7	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 8	GLY 1 SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 9	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 10	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 11	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217
Unit 12	SER 2 HIS 3 MET 4 GLN 94 ALA 95 SER 96 LEU 97 LEU 98 LYS 99 VAL 100 PRO 101 TYR 102 PHE 103 VAL 104 ARG 105 VAL 106 GLN 107 GLY 108 LEU 109 LEU 110 ARG 111 ILE 112 CYS 113 ALA 114 LEU 115 ALA 116 ARG 117 LYS 118 ILE 119 ALA 120 GLY 121 GLY 122 HIS 123 TYR 124 VAL 125 GLN 126 MET 127 ALA 128 ILE 129 ILE 130 LYS 131 LEU 132 GLY 133 ALA 134 LEU 135 THR 136 GLY 137 THR 138 TYR 139 VAL 140 TYR 141 ASN 142 HIS 143 LEU 144 THR 145 PRO 146 LEU 147 ARG 148 ASP 149 TRP 150 ALA 151 HIS 152 ASN 153 GLY 154 LEU 155 ARG 156 ASP 157 LEU 158 ALA 159 VAL 160 ALA 161 VAL 162 GLU 163 PRO 164 VAL 165 VAL 166 PHE 167 SER 168 ARG 169 MET 170 GLU 171 THR 172 LYS 173 LEU 174 ILE 175 THR 176 TRP 177 GLY 178 ALA 179 ASP 180 THR 181 ALA 182 ALA 183 CYS 184 GLY 185 ASP 186 ILE 187 ILE 188 ASN 189 GLY 190 LEU 191 PRO 192 VAL 193 SER 194 ALA 195 ARG 196 ARG 197 GLY 198 GLN 199 GLU 200 ILE 201 LEU 202 LEU 203 GLY 204 PRO 205 ALA 206 ASP 207 GLY 208 MET 209 VAL 210 SER 211 LYS 212 GLY 213 TRP 214 ARG 215 LEU 216 LEU 217

Ligands

Unit 13	BOG 218 BOG 219 BOG 220
Unit 14	BOG 218
Unit 15	BOG 218
Unit 16	BOG 218 BOG 219
Unit 17	BOG 218
Unit 18	DMU 218 BOG 219
Unit 19	BOG 218
Unit 20	BOG 218