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Sequence, Chains, Asymmetric and Biological Units

Title THE NMR STRUCTURE OF AN INTERNAL LOOP FROM 23S RIBOSOMAL RNA OF DEINOCOCCUS RADIODURANS DIFFERS FROM THE STRUCTURE IN THE CRYSTAL OF THE RIBOSOMAL SUBUNIT
Keywords RNA INTERNAL LOOP 5'CUAAG3'/3'GAAGC5', COMPARISON BETWEEN CRYSTAL STRUCTURE AND NMR STRUCTURE, THERMODYNAMICS OF INTERNAL LOOP
Experiment NMR
Number of Models  20


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2H49     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 9 292 0
2  RNA    B 9 290 0
total       18 582 0

Nucleic acids
Unit 1 G1 G2 C3 U4 A5 A6 G7 A8 C9
Unit 2 G10 U11 C12 G13 A14 A15 G16 C17 C18

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany