Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title RNA-BINDING AFFINITIES AND CRYSTAL STRUCTURE OF OLIGONUCLEOT CONTAINING FIVE-ATOM AMIDE-BASED BACKBONE STRUCTURES
Keywords DNA:RNA HYBRID, AMIDE BEARING DNA, THYMIDINE DIMERS, INTERNU AMIDE LINKAGE, DNA, RNA, DNA-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2GUN     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   5'-D(*TP*TP*CP*(T2T)P*(CBR)P*TP*TP*C)-3'  A 8 115 64
2  RNA    B 9 198 0
3  Ligand   5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3'  B 3 0 16
4 Water     17 0 17
total       37 313 97

Nucleic acids
Unit 2 G10 A11 A12 G13 A14 A15 G16 A17 A18

Other macromolecules
Unit 1 DT1 DT2 DC3 T2T4 CBR6 DT7 DT8 DC9

Ligands
Unit 3 3CO21 3CO22 SPM521

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany