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Sequence, Chains, Asymmetric and Biological Units

Title DYNAMIC STRUCTURES OF THE L11-RRNA COMPLEX (MDI)
Keywords L11-RRNA COMPLEX
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2GKY     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   50S RIBOSOMAL PROTEIN L11  A 133 2075 0
2  RNA    B 58 1864 0
total       191 3939 0

Proteins
Unit 1 GLN1 ILE2 LYS3 LEU4 GLN5 LEU6 PRO7 ALA8 GLY9 LYS10 ALA11 THR12 PRO13 ALA14 PRO15 PRO16 VAL17 GLY18 PRO19 ALA20 LEU21 GLY22 GLN23 HIS24 GLY25 VAL26 ASN27 ILE28 MET29 GLU30 PHE31 CYS32 LYS33 ARG34 PHE35 ASN36 ALA37 GLU38 THR39 ALA40 ASP41 LYS42 ALA43 GLY44 MET45 ILE46 LEU47 PRO48 VAL49 VAL50 ILE51 THR52 VAL53 TYR54 GLU55 ASP56 LYS57 SER58 PHE59 THR60 PHE61 ILE62 ILE63 LYS64 THR65 PRO66 PRO67 ALA68 SER69 PHE70 LEU71 LEU72 LYS73 LYS74 ALA75 ALA76 GLY77 ILE78 GLU79 LYS80 GLY81 SER82 SER83 GLU84 PRO85 LYS86 ARG87 LYS88 ILE89 VAL90 GLY91 LYS92 VAL93 THR94 ARG95 LYS96 GLN97 ILE98 GLU99 GLU100 ILE101 ALA102 LYS103 THR104 LYS105 MET106 PRO107 ASP108 LEU109 ASN110 ALA111 ASN112 SER113 LEU114 GLU115 ALA116 ALA117 MET118 LYS119 ILE120 ILE121 GLU122 GLY123 THR124 ALA125 LYS126 SER127 MET128 GLY129 ILE130 GLU131 VAL132 VAL133

Nucleic acids
Unit 2 G134 C135 U136 G137 G138 G139 A140 U141 G142 U143 U144 G145 G146 C147 U148 U149 A150 G151 A152 A153 G154 C155 A156 G157 C158 C159 A160 U161 C162 A163 U164 U165 U166 A167 A168 A169 G170 A171 G172 U173 G174 C175 G176 U177 A178 A179 C180 A181 G182 C183 U184 C185 A186 C187 C188 A189 G190 C191

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany