2GJW - Sequence, Chains, Asymmetric and Biological Units

• Title: RNA RECOGNITION AND CLEAVAGE BY AN SPLICING ENDONUCLEASE
• Keywords: BULGE-HELIX-BULGE RNA-PROTEIN COMPLEX, SPLICING ENDONUCLEASE AF, HYDROLASE/RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2GJW	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	RNA		E	18	379	0
2	RNA		F	12	233	25
3	RNA		H	7	148	0
4	RNA		I	19	401	0
5	RNA		J	12	233	25
6	RNA		L	7	148	0
7	Protein	TRNA-SPLICING ENDONUCLEASE	A	308	2569	0
8	Protein	TRNA-SPLICING ENDONUCLEASE	B	304	2529	0
9	Protein	TRNA-SPLICING ENDONUCLEASE	C	307	2559	0
10	Protein	TRNA-SPLICING ENDONUCLEASE	D	304	2529	0
total				1298	11728	50

Proteins

Unit 7	HIS 1 HIS 2 HIS 3 HIS 4 ILE 5 GLY 6 GLY 7 ASP 8 PHE 9 ALA 10 VAL 11 VAL 12 LYS 13 ALA 14 LYS 15 LYS 16 SER 17 LEU 18 GLU 19 ARG 20 ARG 21 GLY 22 PHE 23 GLY 24 VAL 25 LYS 26 ARG 27 GLY 28 ASP 29 LYS 30 ILE 31 TYR 32 LEU 33 HIS 34 PRO 35 LEU 36 GLU 37 VAL 38 VAL 39 TYR 40 LEU 41 GLN 42 ILE 43 LYS 44 GLY 45 ILE 46 GLU 47 SER 48 PHE 49 GLY 50 GLU 51 LEU 52 GLU 53 ASP 54 VAL 55 LEU 56 SER 57 TRP 58 ALA 59 GLU 60 SER 61 ARG 62 MET 63 GLU 64 ASP 65 PHE 66 SER 67 THR 68 TYR 69 TYR 70 PHE 71 VAL 72 TYR 73 GLU 74 ASP 75 LEU 76 ARG 77 ASP 78 ARG 79 GLY 80 ASN 81 LYS 82 VAL 83 LYS 84 ILE 85 GLN 86 GLY 87 GLU 88 PHE 89 LEU 90 LEU 91 THR 92 LYS 93 LYS 94 PRO 95 TYR 96 LEU 97 PRO 98 ILE 99 SER 100 GLU 101 ARG 102 LYS 103 THR 104 ILE 105 ARG 106 MET 107 GLU 108 GLU 109 ILE 110 ALA 111 GLU 112 LYS 113 ALA 114 ARG 115 ASN 116 PHE 117 ASP 118 GLU 119 LEU 120 ARG 121 LEU 122 ALA 123 VAL 124 VAL 125 ASP 126 GLU 127 GLU 128 SER 129 GLU 130 ILE 131 THR 132 TYR 133 PHE 134 ARG 135 VAL 136 TYR 137 GLU 138 PRO 139 ASP 140 MET 141 MET 142 GLY 143 GLU 144 GLN 145 LYS 146 GLU 147 GLU 148 LEU 149 PRO 150 GLU 151 ILE 152 ALA 153 GLY 154 VAL 155 LEU 156 SER 157 ASP 158 GLU 159 TYR 160 VAL 161 ILE 162 THR 163 LYS 164 GLN 165 THR 166 GLU 167 ILE 168 PHE 169 SER 170 ARG 171 TYR 172 PHE 173 TYR 174 GLY 175 SER 176 GLU 177 LYS 178 GLY 179 ASP 180 LEU 181 VAL 182 THR 183 LEU 184 SER 185 LEU 186 ILE 187 GLU 188 SER 189 LEU 190 TYR 191 LEU 192 LEU 193 ASP 194 LEU 195 GLY 196 LYS 197 LEU 198 ASN 199 LEU 200 LEU 201 ASN 202 ALA 203 ASP 204 ARG 205 GLU 206 GLU 207 LEU 208 VAL 209 LYS 210 ARG 211 ALA 212 ARG 213 GLU 214 VAL 215 GLU 216 ARG 217 ASN 218 PHE 219 ASP 220 ARG 221 ARG 222 TYR 223 GLU 224 VAL 225 TYR 226 ARG 227 ASN 228 LEU 229 LYS 230 GLU 231 ARG 232 GLY 233 PHE 234 VAL 235 VAL 236 LYS 237 THR 238 GLY 239 PHE 240 LYS 241 PHE 242 GLY 243 SER 244 GLU 245 PHE 246 ARG 247 VAL 248 TYR 249 ARG 250 LYS 251 VAL 252 GLU 253 SER 254 VAL 255 ASP 256 ASP 257 LEU 258 PRO 259 HIS 260 SER 261 GLU 262 TYR 263 LEU 264 VAL 265 ASP 266 ILE 267 ALA 268 ASP 269 SER 270 ARG 271 GLU 272 ILE 273 ARG 274 LEU 275 ILE 276 ASP 277 LEU 278 ALA 279 ARG 280 ALA 281 VAL 282 ARG 283 LEU 284 ALA 285 GLN 286 ASN 287 VAL 288 ARG 289 LYS 290 ARG 291 MET 292 VAL 293 PHE 294 ALA 295 TYR 296 GLY 297 LYS 298 ASN 299 TYR 300 LEU 301 CYS 302 PHE 303 GLU 304 ARG 305 VAL 306 LYS 307 VAL 308
Unit 8	ILE 4 GLY 5 GLY 6 ASP 7 PHE 8 ALA 9 VAL 10 VAL 11 LYS 12 ALA 13 LYS 14 LYS 15 SER 16 LEU 17 GLU 18 ARG 19 ARG 20 GLY 21 PHE 22 GLY 23 VAL 24 LYS 25 ARG 26 GLY 27 ASP 28 LYS 29 ILE 30 TYR 31 LEU 32 HIS 33 PRO 34 LEU 35 GLU 36 VAL 37 VAL 38 TYR 39 LEU 40 GLN 41 ILE 42 LYS 43 GLY 44 ILE 45 GLU 46 SER 47 PHE 48 GLY 49 GLU 50 LEU 51 GLU 52 ASP 53 VAL 54 LEU 55 SER 56 TRP 57 ALA 58 GLU 59 SER 60 ARG 61 MET 62 GLU 63 ASP 64 PHE 65 SER 66 THR 67 TYR 68 TYR 69 PHE 70 VAL 71 TYR 72 GLU 73 ASP 74 LEU 75 ARG 76 ASP 77 ARG 78 GLY 79 ASN 80 LYS 81 VAL 82 LYS 83 ILE 84 GLN 85 GLY 86 GLU 87 PHE 88 LEU 89 LEU 90 THR 91 LYS 92 LYS 93 PRO 94 TYR 95 LEU 96 PRO 97 ILE 98 SER 99 GLU 100 ARG 101 LYS 102 THR 103 ILE 104 ARG 105 MET 106 GLU 107 GLU 108 ILE 109 ALA 110 GLU 111 LYS 112 ALA 113 ARG 114 ASN 115 PHE 116 ASP 117 GLU 118 LEU 119 ARG 120 LEU 121 ALA 122 VAL 123 VAL 124 ASP 125 GLU 126 GLU 127 SER 128 GLU 129 ILE 130 THR 131 TYR 132 PHE 133 ARG 134 VAL 135 TYR 136 GLU 137 PRO 138 ASP 139 MET 140 MET 141 GLY 142 GLU 143 GLN 144 LYS 145 GLU 146 GLU 147 LEU 148 PRO 149 GLU 150 ILE 151 ALA 152 GLY 153 VAL 154 LEU 155 SER 156 ASP 157 GLU 158 TYR 159 VAL 160 ILE 161 THR 162 LYS 163 GLN 164 THR 165 GLU 166 ILE 167 PHE 168 SER 169 ARG 170 TYR 171 PHE 172 TYR 173 GLY 174 SER 175 GLU 176 LYS 177 GLY 178 ASP 179 LEU 180 VAL 181 THR 182 LEU 183 SER 184 LEU 185 ILE 186 GLU 187 SER 188 LEU 189 TYR 190 LEU 191 LEU 192 ASP 193 LEU 194 GLY 195 LYS 196 LEU 197 ASN 198 LEU 199 LEU 200 ASN 201 ALA 202 ASP 203 ARG 204 GLU 205 GLU 206 LEU 207 VAL 208 LYS 209 ARG 210 ALA 211 ARG 212 GLU 213 VAL 214 GLU 215 ARG 216 ASN 217 PHE 218 ASP 219 ARG 220 ARG 221 TYR 222 GLU 223 VAL 224 TYR 225 ARG 226 ASN 227 LEU 228 LYS 229 GLU 230 ARG 231 GLY 232 PHE 233 VAL 234 VAL 235 LYS 236 THR 237 GLY 238 PHE 239 LYS 240 PHE 241 GLY 242 SER 243 GLU 244 PHE 245 ARG 246 VAL 247 TYR 248 ARG 249 LYS 250 VAL 251 GLU 252 SER 253 VAL 254 ASP 255 ASP 256 LEU 257 PRO 258 HIS 259 SER 260 GLU 261 TYR 262 LEU 263 VAL 264 ASP 265 ILE 266 ALA 267 ASP 268 SER 269 ARG 270 GLU 271 ILE 272 ARG 273 LEU 274 ILE 275 ASP 276 LEU 277 ALA 278 ARG 279 ALA 280 VAL 281 ARG 282 LEU 283 ALA 284 GLN 285 ASN 286 VAL 287 ARG 288 LYS 289 ARG 290 MET 291 VAL 292 PHE 293 ALA 294 TYR 295 GLY 296 LYS 297 ASN 298 TYR 299 LEU 300 CYS 301 PHE 302 GLU 303 ARG 304 VAL 305 LYS 306 VAL 307
Unit 9	HIS 1 HIS 2 HIS 3 ILE 4 GLY 5 GLY 6 ASP 7 PHE 8 ALA 9 VAL 10 VAL 11 LYS 12 ALA 13 LYS 14 LYS 15 SER 16 LEU 17 GLU 18 ARG 19 ARG 20 GLY 21 PHE 22 GLY 23 VAL 24 LYS 25 ARG 26 GLY 27 ASP 28 LYS 29 ILE 30 TYR 31 LEU 32 HIS 33 PRO 34 LEU 35 GLU 36 VAL 37 VAL 38 TYR 39 LEU 40 GLN 41 ILE 42 LYS 43 GLY 44 ILE 45 GLU 46 SER 47 PHE 48 GLY 49 GLU 50 LEU 51 GLU 52 ASP 53 VAL 54 LEU 55 SER 56 TRP 57 ALA 58 GLU 59 SER 60 ARG 61 MET 62 GLU 63 ASP 64 PHE 65 SER 66 THR 67 TYR 68 TYR 69 PHE 70 VAL 71 TYR 72 GLU 73 ASP 74 LEU 75 ARG 76 ASP 77 ARG 78 GLY 79 ASN 80 LYS 81 VAL 82 LYS 83 ILE 84 GLN 85 GLY 86 GLU 87 PHE 88 LEU 89 LEU 90 THR 91 LYS 92 LYS 93 PRO 94 TYR 95 LEU 96 PRO 97 ILE 98 SER 99 GLU 100 ARG 101 LYS 102 THR 103 ILE 104 ARG 105 MET 106 GLU 107 GLU 108 ILE 109 ALA 110 GLU 111 LYS 112 ALA 113 ARG 114 ASN 115 PHE 116 ASP 117 GLU 118 LEU 119 ARG 120 LEU 121 ALA 122 VAL 123 VAL 124 ASP 125 GLU 126 GLU 127 SER 128 GLU 129 ILE 130 THR 131 TYR 132 PHE 133 ARG 134 VAL 135 TYR 136 GLU 137 PRO 138 ASP 139 MET 140 MET 141 GLY 142 GLU 143 GLN 144 LYS 145 GLU 146 GLU 147 LEU 148 PRO 149 GLU 150 ILE 151 ALA 152 GLY 153 VAL 154 LEU 155 SER 156 ASP 157 GLU 158 TYR 159 VAL 160 ILE 161 THR 162 LYS 163 GLN 164 THR 165 GLU 166 ILE 167 PHE 168 SER 169 ARG 170 TYR 171 PHE 172 TYR 173 GLY 174 SER 175 GLU 176 LYS 177 GLY 178 ASP 179 LEU 180 VAL 181 THR 182 LEU 183 SER 184 LEU 185 ILE 186 GLU 187 SER 188 LEU 189 TYR 190 LEU 191 LEU 192 ASP 193 LEU 194 GLY 195 LYS 196 LEU 197 ASN 198 LEU 199 LEU 200 ASN 201 ALA 202 ASP 203 ARG 204 GLU 205 GLU 206 LEU 207 VAL 208 LYS 209 ARG 210 ALA 211 ARG 212 GLU 213 VAL 214 GLU 215 ARG 216 ASN 217 PHE 218 ASP 219 ARG 220 ARG 221 TYR 222 GLU 223 VAL 224 TYR 225 ARG 226 ASN 227 LEU 228 LYS 229 GLU 230 ARG 231 GLY 232 PHE 233 VAL 234 VAL 235 LYS 236 THR 237 GLY 238 PHE 239 LYS 240 PHE 241 GLY 242 SER 243 GLU 244 PHE 245 ARG 246 VAL 247 TYR 248 ARG 249 LYS 250 VAL 251 GLU 252 SER 253 VAL 254 ASP 255 ASP 256 LEU 257 PRO 258 HIS 259 SER 260 GLU 261 TYR 262 LEU 263 VAL 264 ASP 265 ILE 266 ALA 267 ASP 268 SER 269 ARG 270 GLU 271 ILE 272 ARG 273 LEU 274 ILE 275 ASP 276 LEU 277 ALA 278 ARG 279 ALA 280 VAL 281 ARG 282 LEU 283 ALA 284 GLN 285 ASN 286 VAL 287 ARG 288 LYS 289 ARG 290 MET 291 VAL 292 PHE 293 ALA 294 TYR 295 GLY 296 LYS 297 ASN 298 TYR 299 LEU 300 CYS 301 PHE 302 GLU 303 ARG 304 VAL 305 LYS 306 VAL 307
Unit 10	ILE 5 GLY 6 GLY 7 ASP 8 PHE 9 ALA 10 VAL 11 VAL 12 LYS 13 ALA 14 LYS 15 LYS 16 SER 17 LEU 18 GLU 19 ARG 20 ARG 21 GLY 22 PHE 23 GLY 24 VAL 25 LYS 26 ARG 27 GLY 28 ASP 29 LYS 30 ILE 31 TYR 32 LEU 33 HIS 34 PRO 35 LEU 36 GLU 37 VAL 38 VAL 39 TYR 40 LEU 41 GLN 42 ILE 43 LYS 44 GLY 45 ILE 46 GLU 47 SER 48 PHE 49 GLY 50 GLU 51 LEU 52 GLU 53 ASP 54 VAL 55 LEU 56 SER 57 TRP 58 ALA 59 GLU 60 SER 61 ARG 62 MET 63 GLU 64 ASP 65 PHE 66 SER 67 THR 68 TYR 69 TYR 70 PHE 71 VAL 72 TYR 73 GLU 74 ASP 75 LEU 76 ARG 77 ASP 78 ARG 79 GLY 80 ASN 81 LYS 82 VAL 83 LYS 84 ILE 85 GLN 86 GLY 87 GLU 88 PHE 89 LEU 90 LEU 91 THR 92 LYS 93 LYS 94 PRO 95 TYR 96 LEU 97 PRO 98 ILE 99 SER 100 GLU 101 ARG 102 LYS 103 THR 104 ILE 105 ARG 106 MET 107 GLU 108 GLU 109 ILE 110 ALA 111 GLU 112 LYS 113 ALA 114 ARG 115 ASN 116 PHE 117 ASP 118 GLU 119 LEU 120 ARG 121 LEU 122 ALA 123 VAL 124 VAL 125 ASP 126 GLU 127 GLU 128 SER 129 GLU 130 ILE 131 THR 132 TYR 133 PHE 134 ARG 135 VAL 136 TYR 137 GLU 138 PRO 139 ASP 140 MET 141 MET 142 GLY 143 GLU 144 GLN 145 LYS 146 GLU 147 GLU 148 LEU 149 PRO 150 GLU 151 ILE 152 ALA 153 GLY 154 VAL 155 LEU 156 SER 157 ASP 158 GLU 159 TYR 160 VAL 161 ILE 162 THR 163 LYS 164 GLN 165 THR 166 GLU 167 ILE 168 PHE 169 SER 170 ARG 171 TYR 172 PHE 173 TYR 174 GLY 175 SER 176 GLU 177 LYS 178 GLY 179 ASP 180 LEU 181 VAL 182 THR 183 LEU 184 SER 185 LEU 186 ILE 187 GLU 188 SER 189 LEU 190 TYR 191 LEU 192 LEU 193 ASP 194 LEU 195 GLY 196 LYS 197 LEU 198 ASN 199 LEU 200 LEU 201 ASN 202 ALA 203 ASP 204 ARG 205 GLU 206 GLU 207 LEU 208 VAL 209 LYS 210 ARG 211 ALA 212 ARG 213 GLU 214 VAL 215 GLU 216 ARG 217 ASN 218 PHE 219 ASP 220 ARG 221 ARG 222 TYR 223 GLU 224 VAL 225 TYR 226 ARG 227 ASN 228 LEU 229 LYS 230 GLU 231 ARG 232 GLY 233 PHE 234 VAL 235 VAL 236 LYS 237 THR 238 GLY 239 PHE 240 LYS 241 PHE 242 GLY 243 SER 244 GLU 245 PHE 246 ARG 247 VAL 248 TYR 249 ARG 250 LYS 251 VAL 252 GLU 253 SER 254 VAL 255 ASP 256 ASP 257 LEU 258 PRO 259 HIS 260 SER 261 GLU 262 TYR 263 LEU 264 VAL 265 ASP 266 ILE 267 ALA 268 ASP 269 SER 270 ARG 271 GLU 272 ILE 273 ARG 274 LEU 275 ILE 276 ASP 277 LEU 278 ALA 279 ARG 280 ALA 281 VAL 282 ARG 283 LEU 284 ALA 285 GLN 286 ASN 287 VAL 288 ARG 289 LYS 290 ARG 291 MET 292 VAL 293 PHE 294 ALA 295 TYR 296 GLY 297 LYS 298 ASN 299 TYR 300 LEU 301 CYS 302 PHE 303 GLU 304 ARG 305 VAL 306 LYS 307 VAL 308

Nucleic acids

Unit 1	G 3 C 4 G 5 A 6 C 7 C 8 G 9 A 10 C 11 C 12 A 13 DU 14 A 15 G 16 C 17 U 18 G 19 C 20
Unit 2	U 3 G 4 C 5 A 6 G 7 C 8 G 9 G 10 U 11 C 12 A 13 A23 14
Unit 3	A 15 G 16 G 17 U 18 C 19 G 20 C 21
Unit 4	G 3 C 4 G 5 A 6 C 7 C 8 G 9 A 10 C 11 C 12 A 13 DU 14 A 15 G 16 C 17 U 18 G 19 C 20 A 21
Unit 5	U 3 G 4 C 5 A 6 G 7 C 8 G 9 G 10 U 11 C 12 A 13 A23 14
Unit 6	A 15 G 16 G 17 U 18 C 19 G 20 C 21