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Sequence, Chains, Asymmetric and Biological Units

Title THE 1,1-PROTON TRANSFER REACTION MECHANISM BY ALPHA-METHYLAC RACEMASE IS CATALYZED BY AN ASPARTE/HISTIDINE PAIR AND INVO SMOOTH, METHIONINE-RICH SURFACE FOR BINDING THE FATTY ACYL
Keywords ALPHA-METHYLACYL-COA RACEMASE, RACEMASE, COA TRANSFERASE, PR TRANSFER, COENZYME A, ISOMERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2GCI     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  A 354 2679 0
2  Protein   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  B 354 2679 0
3  Protein   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  C 354 2679 0
4  Protein   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  D 354 2679 0
5  Ligand   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  A 2 0 61
6  Ligand   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  B 3 0 76
7  Ligand   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  C 3 0 66
8  Ligand   PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR  D 2 0 70
9 Water     1208 0 1208
total       2634 10716 1481
Proteins
Unit 1 ALA2 GLY3 PRO4 LEU5 SER6 GLY7 LEU8 ARG9 VAL10 VAL11 GLU12 LEU13 ALA14 GLY15 ILE16 GLY17 PRO18 GLY19 PRO20 HIS21 ALA22 ALA23 MET24 ILE25 LEU26 GLY27 ASP28 LEU29 GLY30 ALA31 ASP32 VAL33 VAL34 ARG35 ILE36 ASP37 ARG38 PRO39 ILE45 SER46 ARG47 ASP48 ALA49 MET50 LEU51 ARG52 ASN53 ARG54 ARG55 ILE56 VAL57 THR58 ALA59 ASP60 LEU61 LYS62 SER63 ASP64 GLN65 GLY66 LEU67 GLU68 LEU69 ALA70 LEU71 LYS72 LEU73 ILE74 ALA75 LYS76 ALA77 ASP78 VAL79 LEU80 ILE81 GLU82 GLY83 TYR84 ARG85 PRO86 GLY87 VAL88 THR89 GLU90 ARG91 LEU92 GLY93 LEU94 GLY95 PRO96 GLU97 GLU98 CYS99 ALA100 LYS101 VAL102 ASN103 ASP104 ARG105 LEU106 ILE107 TYR108 ALA109 ARG110 MET111 THR112 GLY113 TRP114 GLY115 GLN116 THR117 GLY118 PRO119 ARG120 SER121 GLN122 GLN123 ALA124 GLY125 HIS126 ASP127 ILE128 ASN129 TYR130 ILE131 SER132 LEU133 ASN134 GLY135 ILE136 LEU137 HIS138 ALA139 ILE140 GLY141 ARG142 GLY143 ASP144 GLU145 ARG146 PRO147 VAL148 PRO149 PRO150 LEU151 ASN152 LEU153 VAL154 GLY155 ASP156 PHE157 GLY158 GLY159 GLY160 SER161 MET162 PHE163 LEU164 LEU165 VAL166 GLY167 ILE168 LEU169 ALA170 ALA171 LEU172 TRP173 GLU174 ARG175 GLN176 SER177 SER178 GLY179 LYS180 GLY181 GLN182 VAL183 VAL184 ASP185 ALA186 ALA187 MET188 VAL189 ASP190 GLY191 SER192 SER193 VAL194 LEU195 ILE196 GLN197 MET198 MET199 TRP200 ALA201 MET202 ARG203 ALA204 THR205 GLY206 MET207 TRP208 THR209 ASP210 THR211 ARG212 GLY213 ALA214 ASN215 MET216 LEU217 ASP218 GLY219 GLY220 ALA221 PRO222 TYR223 TYR224 ASP225 THR226 TYR227 GLU228 CYS229 ALA230 ASP231 GLY232 ARG233 TYR234 VAL235 ALA236 VAL237 GLY238 ALA239 ILE240 GLU241 PRO242 GLN243 PHE244 TYR245 ALA246 ALA247 MET248 LEU249 ALA250 GLY251 LEU252 GLY253 LEU254 ASP255 ALA256 ALA257 GLU258 LEU259 PRO260 PRO261 GLN262 ASN263 ASP264 ARG265 ALA266 ARG267 TRP268 PRO269 GLU270 LEU271 ARG272 ALA273 LEU274 LEU275 THR276 GLU277 ALA278 PHE279 ALA280 SER281 HIS282 ASP283 ARG284 ASP285 HIS286 TRP287 GLY288 ALA289 VAL290 PHE291 ALA292 ASN293 SER294 ASP295 ALA296 CYS297 VAL298 THR299 PRO300 VAL301 LEU302 ALA303 PHE304 GLY305 GLU306 VAL307 HIS308 ASN309 GLU310 PRO311 HIS312 ILE313 ILE314 GLU315 ARG316 ASN317 THR318 PHE319 TYR320 GLU321 ALA322 ASN323 GLY324 GLY325 TRP326 GLN327 PRO328 MET329 PRO330 ALA331 PRO332 ARG333 PHE334 SER335 ARG336 THR337 ALA338 SER339 SER340 GLN341 PRO342 ARG343 PRO344 PRO345 ALA346 ALA347 THR348 ILE349 ASP350 ILE351 GLU352 ALA353 VAL354 LEU355 THR356 ASP357 TRP358 ASP359 GLY360
Unit 2 ALA2 GLY3 PRO4 LEU5 SER6 GLY7 LEU8 ARG9 VAL10 VAL11 GLU12 LEU13 ALA14 GLY15 ILE16 GLY17 PRO18 GLY19 PRO20 HIS21 ALA22 ALA23 MET24 ILE25 LEU26 GLY27 ASP28 LEU29 GLY30 ALA31 ASP32 VAL33 VAL34 ARG35 ILE36 ASP37 ARG38 PRO39 ILE45 SER46 ARG47 ASP48 ALA49 MET50 LEU51 ARG52 ASN53 ARG54 ARG55 ILE56 VAL57 THR58 ALA59 ASP60 LEU61 LYS62 SER63 ASP64 GLN65 GLY66 LEU67 GLU68 LEU69 ALA70 LEU71 LYS72 LEU73 ILE74 ALA75 LYS76 ALA77 ASP78 VAL79 LEU80 ILE81 GLU82 GLY83 TYR84 ARG85 PRO86 GLY87 VAL88 THR89 GLU90 ARG91 LEU92 GLY93 LEU94 GLY95 PRO96 GLU97 GLU98 CYS99 ALA100 LYS101 VAL102 ASN103 ASP104 ARG105 LEU106 ILE107 TYR108 ALA109 ARG110 MET111 THR112 GLY113 TRP114 GLY115 GLN116 THR117 GLY118 PRO119 ARG120 SER121 GLN122 GLN123 ALA124 GLY125 HIS126 ASP127 ILE128 ASN129 TYR130 ILE131 SER132 LEU133 ASN134 GLY135 ILE136 LEU137 HIS138 ALA139 ILE140 GLY141 ARG142 GLY143 ASP144 GLU145 ARG146 PRO147 VAL148 PRO149 PRO150 LEU151 ASN152 LEU153 VAL154 GLY155 ASP156 PHE157 GLY158 GLY159 GLY160 SER161 MET162 PHE163 LEU164 LEU165 VAL166 GLY167 ILE168 LEU169 ALA170 ALA171 LEU172 TRP173 GLU174 ARG175 GLN176 SER177 SER178 GLY179 LYS180 GLY181 GLN182 VAL183 VAL184 ASP185 ALA186 ALA187 MET188 VAL189 ASP190 GLY191 SER192 SER193 VAL194 LEU195 ILE196 GLN197 MET198 MET199 TRP200 ALA201 MET202 ARG203 ALA204 THR205 GLY206 MET207 TRP208 THR209 ASP210 THR211 ARG212 GLY213 ALA214 ASN215 MET216 LEU217 ASP218 GLY219 GLY220 ALA221 PRO222 TYR223 TYR224 ASP225 THR226 TYR227 GLU228 CYS229 ALA230 ASP231 GLY232 ARG233 TYR234 VAL235 ALA236 VAL237 GLY238 ALA239 ILE240 GLU241 PRO242 GLN243 PHE244 TYR245 ALA246 ALA247 MET248 LEU249 ALA250 GLY251 LEU252 GLY253 LEU254 ASP255 ALA256 ALA257 GLU258 LEU259 PRO260 PRO261 GLN262 ASN263 ASP264 ARG265 ALA266 ARG267 TRP268 PRO269 GLU270 LEU271 ARG272 ALA273 LEU274 LEU275 THR276 GLU277 ALA278 PHE279 ALA280 SER281 HIS282 ASP283 ARG284 ASP285 HIS286 TRP287 GLY288 ALA289 VAL290 PHE291 ALA292 ASN293 SER294 ASP295 ALA296 CYS297 VAL298 THR299 PRO300 VAL301 LEU302 ALA303 PHE304 GLY305 GLU306 VAL307 HIS308 ASN309 GLU310 PRO311 HIS312 ILE313 ILE314 GLU315 ARG316 ASN317 THR318 PHE319 TYR320 GLU321 ALA322 ASN323 GLY324 GLY325 TRP326 GLN327 PRO328 MET329 PRO330 ALA331 PRO332 ARG333 PHE334 SER335 ARG336 THR337 ALA338 SER339 SER340 GLN341 PRO342 ARG343 PRO344 PRO345 ALA346 ALA347 THR348 ILE349 ASP350 ILE351 GLU352 ALA353 VAL354 LEU355 THR356 ASP357 TRP358 ASP359 GLY360
Unit 3 ALA2 GLY3 PRO4 LEU5 SER6 GLY7 LEU8 ARG9 VAL10 VAL11 GLU12 LEU13 ALA14 GLY15 ILE16 GLY17 PRO18 GLY19 PRO20 HIS21 ALA22 ALA23 MET24 ILE25 LEU26 GLY27 ASP28 LEU29 GLY30 ALA31 ASP32 VAL33 VAL34 ARG35 ILE36 ASP37 ARG38 PRO39 ILE45 SER46 ARG47 ASP48 ALA49 MET50 LEU51 ARG52 ASN53 ARG54 ARG55 ILE56 VAL57 THR58 ALA59 ASP60 LEU61 LYS62 SER63 ASP64 GLN65 GLY66 LEU67 GLU68 LEU69 ALA70 LEU71 LYS72 LEU73 ILE74 ALA75 LYS76 ALA77 ASP78 VAL79 LEU80 ILE81 GLU82 GLY83 TYR84 ARG85 PRO86 GLY87 VAL88 THR89 GLU90 ARG91 LEU92 GLY93 LEU94 GLY95 PRO96 GLU97 GLU98 CYS99 ALA100 LYS101 VAL102 ASN103 ASP104 ARG105 LEU106 ILE107 TYR108 ALA109 ARG110 MET111 THR112 GLY113 TRP114 GLY115 GLN116 THR117 GLY118 PRO119 ARG120 SER121 GLN122 GLN123 ALA124 GLY125 HIS126 ASP127 ILE128 ASN129 TYR130 ILE131 SER132 LEU133 ASN134 GLY135 ILE136 LEU137 HIS138 ALA139 ILE140 GLY141 ARG142 GLY143 ASP144 GLU145 ARG146 PRO147 VAL148 PRO149 PRO150 LEU151 ASN152 LEU153 VAL154 GLY155 ASP156 PHE157 GLY158 GLY159 GLY160 SER161 MET162 PHE163 LEU164 LEU165 VAL166 GLY167 ILE168 LEU169 ALA170 ALA171 LEU172 TRP173 GLU174 ARG175 GLN176 SER177 SER178 GLY179 LYS180 GLY181 GLN182 VAL183 VAL184 ASP185 ALA186 ALA187 MET188 VAL189 ASP190 GLY191 SER192 SER193 VAL194 LEU195 ILE196 GLN197 MET198 MET199 TRP200 ALA201 MET202 ARG203 ALA204 THR205 GLY206 MET207 TRP208 THR209 ASP210 THR211 ARG212 GLY213 ALA214 ASN215 MET216 LEU217 ASP218 GLY219 GLY220 ALA221 PRO222 TYR223 TYR224 ASP225 THR226 TYR227 GLU228 CYS229 ALA230 ASP231 GLY232 ARG233 TYR234 VAL235 ALA236 VAL237 GLY238 ALA239 ILE240 GLU241 PRO242 GLN243 PHE244 TYR245 ALA246 ALA247 MET248 LEU249 ALA250 GLY251 LEU252 GLY253 LEU254 ASP255 ALA256 ALA257 GLU258 LEU259 PRO260 PRO261 GLN262 ASN263 ASP264 ARG265 ALA266 ARG267 TRP268 PRO269 GLU270 LEU271 ARG272 ALA273 LEU274 LEU275 THR276 GLU277 ALA278 PHE279 ALA280 SER281 HIS282 ASP283 ARG284 ASP285 HIS286 TRP287 GLY288 ALA289 VAL290 PHE291 ALA292 ASN293 SER294 ASP295 ALA296 CYS297 VAL298 THR299 PRO300 VAL301 LEU302 ALA303 PHE304 GLY305 GLU306 VAL307 HIS308 ASN309 GLU310 PRO311 HIS312 ILE313 ILE314 GLU315 ARG316 ASN317 THR318 PHE319 TYR320 GLU321 ALA322 ASN323 GLY324 GLY325 TRP326 GLN327 PRO328 MET329 PRO330 ALA331 PRO332 ARG333 PHE334 SER335 ARG336 THR337 ALA338 SER339 SER340 GLN341 PRO342 ARG343 PRO344 PRO345 ALA346 ALA347 THR348 ILE349 ASP350 ILE351 GLU352 ALA353 VAL354 LEU355 THR356 ASP357 TRP358 ASP359 GLY360
Unit 4 ALA2 GLY3 PRO4 LEU5 SER6 GLY7 LEU8 ARG9 VAL10 VAL11 GLU12 LEU13 ALA14 GLY15 ILE16 GLY17 PRO18 GLY19 PRO20 HIS21 ALA22 ALA23 MET24 ILE25 LEU26 GLY27 ASP28 LEU29 GLY30 ALA31 ASP32 VAL33 VAL34 ARG35 ILE36 ASP37 ARG38 PRO39 ILE45 SER46 ARG47 ASP48 ALA49 MET50 LEU51 ARG52 ASN53 ARG54 ARG55 ILE56 VAL57 THR58 ALA59 ASP60 LEU61 LYS62 SER63 ASP64 GLN65 GLY66 LEU67 GLU68 LEU69 ALA70 LEU71 LYS72 LEU73 ILE74 ALA75 LYS76 ALA77 ASP78 VAL79 LEU80 ILE81 GLU82 GLY83 TYR84 ARG85 PRO86 GLY87 VAL88 THR89 GLU90 ARG91 LEU92 GLY93 LEU94 GLY95 PRO96 GLU97 GLU98 CYS99 ALA100 LYS101 VAL102 ASN103 ASP104 ARG105 LEU106 ILE107 TYR108 ALA109 ARG110 MET111 THR112 GLY113 TRP114 GLY115 GLN116 THR117 GLY118 PRO119 ARG120 SER121 GLN122 GLN123 ALA124 GLY125 HIS126 ASP127 ILE128 ASN129 TYR130 ILE131 SER132 LEU133 ASN134 GLY135 ILE136 LEU137 HIS138 ALA139 ILE140 GLY141 ARG142 GLY143 ASP144 GLU145 ARG146 PRO147 VAL148 PRO149 PRO150 LEU151 ASN152 LEU153 VAL154 GLY155 ASP156 PHE157 GLY158 GLY159 GLY160 SER161 MET162 PHE163 LEU164 LEU165 VAL166 GLY167 ILE168 LEU169 ALA170 ALA171 LEU172 TRP173 GLU174 ARG175 GLN176 SER177 SER178 GLY179 LYS180 GLY181 GLN182 VAL183 VAL184 ASP185 ALA186 ALA187 MET188 VAL189 ASP190 GLY191 SER192 SER193 VAL194 LEU195 ILE196 GLN197 MET198 MET199 TRP200 ALA201 MET202 ARG203 ALA204 THR205 GLY206 MET207 TRP208 THR209 ASP210 THR211 ARG212 GLY213 ALA214 ASN215 MET216 LEU217 ASP218 GLY219 GLY220 ALA221 PRO222 TYR223 TYR224 ASP225 THR226 TYR227 GLU228 CYS229 ALA230 ASP231 GLY232 ARG233 TYR234 VAL235 ALA236 VAL237 GLY238 ALA239 ILE240 GLU241 PRO242 GLN243 PHE244 TYR245 ALA246 ALA247 MET248 LEU249 ALA250 GLY251 LEU252 GLY253 LEU254 ASP255 ALA256 ALA257 GLU258 LEU259 PRO260 PRO261 GLN262 ASN263 ASP264 ARG265 ALA266 ARG267 TRP268 PRO269 GLU270 LEU271 ARG272 ALA273 LEU274 LEU275 THR276 GLU277 ALA278 PHE279 ALA280 SER281 HIS282 ASP283 ARG284 ASP285 HIS286 TRP287 GLY288 ALA289 VAL290 PHE291 ALA292 ASN293 SER294 ASP295 ALA296 CYS297 VAL298 THR299 PRO300 VAL301 LEU302 ALA303 PHE304 GLY305 GLU306 VAL307 HIS308 ASN309 GLU310 PRO311 HIS312 ILE313 ILE314 GLU315 ARG316 ASN317 THR318 PHE319 TYR320 GLU321 ALA322 ASN323 GLY324 GLY325 TRP326 GLN327 PRO328 MET329 PRO330 ALA331 PRO332 ARG333 PHE334 SER335 ARG336 THR337 ALA338 SER339 SER340 GLN341 PRO342 ARG343 PRO344 PRO345 ALA346 ALA347 THR348 ILE349 ASP350 ILE351 GLU352 ALA353 VAL354 LEU355 THR356 ASP357 TRP358 ASP359 GLY360
Ligands
Unit 5 GOL1306 MRR1751
Unit 6 GOL1304 GOL1305 MRR1752
Unit 7 GOL1301 GOL1302 MRR1753
Unit 8 GOL1303 MRR1754
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany