2GBF - Sequence, Chains, Asymmetric and Biological Units

• Title: RAT DPP-IV WITH ALKYNYL CYANOPYRROLIDINE #1
• Keywords: SERINE PEPTIDASE BETA PROPELLER, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2GBF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DIPEPTIDYL PEPTIDASE 4	A	730	5920	0
2	Protein	DIPEPTIDYL PEPTIDASE 4	B	730	5920	0
3	Ligand	DIPEPTIDYL PEPTIDASE 4	A	1	0	18
total				1461	11840	18

Proteins

Unit 1

ARG 38 ARG 39 THR 40 TYR 41 THR 42 LEU 43 ALA 44 ASP 45 TYR 46 LEU 47 LYS 48 ASN 49 THR 50 PHE 51 ARG 52 VAL 53 LYS 54 SER 55 TYR 56 SER 57 LEU 58 ARG 59 TRP 60 VAL 61 SER 62 ASP 63 SER 64 GLU 65 TYR 66 LEU 67 TYR 68 LYS 69 GLN 70 GLU 71 ASN 72 ASN 73 ILE 74 LEU 75 LEU 76 PHE 77 ASN 78 ALA 79 GLU 80 HIS 81 GLY 82 ASN 83 SER 84 SER 85 ILE 86 PHE 87 LEU 88 GLU 89 ASN 90 SER 91 THR 92 PHE 93 GLU 94 ILE 95 PHE 96 GLY 97 ASP 98 SER 99 ILE 100 SER 101 ASP 102 TYR 103 SER 104 VAL 105 SER 106 PRO 107 ASP 108 ARG 109 LEU 110 PHE 111 VAL 112 LEU 113 LEU 114 GLU 115 TYR 116 ASN 117 TYR 118 VAL 119 LYS 120 GLN 121 TRP 122 ARG 123 HIS 124 SER 125 TYR 126 THR 127 ALA 128 SER 129 TYR 130 SER 131 ILE 132 TYR 133 ASP 134 LEU 135 ASN 136 LYS 137 ARG 138 GLN 139 LEU 140 ILE 141 THR 142 GLU 143 GLU 144 LYS 145 ILE 146 PRO 147 ASN 148 ASN 149 THR 150 GLN 151 TRP 152 ILE 153 THR 154 TRP 155 SER 156 GLN 157 GLU 158 GLY 159 HIS 160 LYS 161 LEU 162 ALA 163 TYR 164 VAL 165 TRP 166 LYS 167 ASN 168 ASP 169 ILE 170 TYR 171 VAL 172 LYS 173 ILE 174 GLU 175 PRO 176 HIS 177 LEU 178 PRO 179 SER 180 HIS 181 ARG 182 ILE 183 THR 184 SER 185 THR 186 GLY 187 LYS 188 GLU 189 ASN 190 VAL 191 ILE 192 PHE 193 ASN 194 GLY 195 ILE 196 ASN 197 ASP 198 TRP 199 VAL 200 TYR 201 GLU 202 GLU 203 GLU 204 ILE 205 PHE 206 GLY 207 ALA 208 TYR 209 SER 210 ALA 211 LEU 212 TRP 213 TRP 214 SER 215 PRO 216 ASN 217 GLY 218 THR 219 PHE 220 LEU 221 ALA 222 TYR 223 ALA 224 GLN 225 PHE 226 ASN 227 ASP 228 THR 229 GLY 230 VAL 231 PRO 232 LEU 233 ILE 234 GLU 235 TYR 236 SER 237 PHE 238 TYR 239 SER 240 ASP 241 GLU 242 SER 243 LEU 244 GLN 245 TYR 246 PRO 247 LYS 248 THR 249 VAL 250 TRP 251 ILE 252 PRO 253 TYR 254 PRO 255 LYS 256 ALA 257 GLY 258 ALA 259 VAL 260 ASN 261 PRO 262 THR 263 VAL 264 LYS 265 PHE 266 PHE 267 ILE 268 VAL 269 ASN 270 THR 271 ASP 272 SER 273 LEU 274 SER 275 SER 276 THR 277 THR 278 THR 279 THR 280 ILE 281 PRO 282 MET 283 GLN 284 ILE 285 THR 286 ALA 287 PRO 288 ALA 289 SER 290 VAL 291 THR 292 THR 293 GLY 294 ASP 295 HIS 296 TYR 297 LEU 298 CYS 299 ASP 300 VAL 301 ALA 302 TRP 303 VAL 304 SER 305 GLU 306 ASP 307 ARG 308 ILE 309 SER 310 LEU 311 GLN 312 TRP 313 LEU 314 ARG 315 ARG 316 ILE 317 GLN 318 ASN 319 TYR 320 SER 321 VAL 322 MET 323 ALA 324 ILE 325 CYS 326 ASP 327 TYR 328 ASP 329 LYS 330 THR 331 THR 332 LEU 333 VAL 334 TRP 335 ASN 336 CYS 337 PRO 338 THR 339 THR 340 GLN 341 GLU 342 HIS 343 ILE 344 GLU 345 THR 346 SER 347 ALA 348 THR 349 GLY 350 TRP 351 CYS 352 GLY 353 ARG 354 PHE 355 ARG 356 PRO 357 ALA 358 GLU 359 PRO 360 HIS 361 PHE 362 THR 363 SER 364 ASP 365 GLY 366 SER 367 SER 368 PHE 369 TYR 370 LYS 371 ILE 372 VAL 373 SER 374 ASP 375 LYS 376 ASP 377 GLY 378 TYR 379 LYS 380 HIS 381 ILE 382 CYS 383 GLN 384 PHE 385 GLN 386 LYS 387 ASP 388 ARG 389 LYS 390 PRO 391 GLU 392 GLN 393 VAL 394 CYS 395 THR 396 PHE 397 ILE 398 THR 399 LYS 400 GLY 401 ALA 402 TRP 403 GLU 404 VAL 405 ILE 406 SER 407 ILE 408 GLU 409 ALA 410 LEU 411 THR 412 SER 413 ASP 414 TYR 415 LEU 416 TYR 417 TYR 418 ILE 419 SER 420 ASN 421 GLU 422 TYR 423 LYS 424 GLU 425 MET 426 PRO 427 GLY 428 GLY 429 ARG 430 ASN 431 LEU 432 TYR 433 LYS 434 ILE 435 GLN 436 LEU 437 THR 438 ASP 439 HIS 440 THR 441 ASN 442 LYS 443 LYS 444 CYS 445 LEU 446 SER 447 CYS 448 ASP 449 LEU 450 ASN 451 PRO 452 GLU 453 ARG 454 CYS 455 GLN 456 TYR 457 TYR 458 SER 459 VAL 460 SER 461 LEU 462 SER 463 LYS 464 GLU 465 ALA 466 LYS 467 TYR 468 TYR 469 GLN 470 LEU 471 GLY 472 CYS 473 ARG 474 GLY 475 PRO 476 GLY 477 LEU 478 PRO 479 LEU 480 TYR 481 THR 482 LEU 483 HIS 484 ARG 485 SER 486 THR 487 ASP 488 GLN 489 LYS 490 GLU 491 LEU 492 ARG 493 VAL 494 LEU 495 GLU 496 ASP 497 ASN 498 SER 499 ALA 500 LEU 501 ASP 502 LYS 503 MET 504 LEU 505 GLN 506 ASP 507 VAL 508 GLN 509 MET 510 PRO 511 SER 512 LYS 513 LYS 514 LEU 515 ASP 516 PHE 517 ILE 518 VAL 519 LEU 520 ASN 521 GLU 522 THR 523 ARG 524 PHE 525 TRP 526 TYR 527 GLN 528 MET 529 ILE 530 LEU 531 PRO 532 PRO 533 HIS 534 PHE 535 ASP 536 LYS 537 SER 538 LYS 539 LYS 540 TYR 541 PRO 542 LEU 543 LEU 544 ILE 545 ASP 546 VAL 547 TYR 548 ALA 549 GLY 550 PRO 551 CYS 552 SER 553 GLN 554 LYS 555 ALA 556 ASP 557 ALA 558 ALA 559 PHE 560 ARG 561 LEU 562 ASN 563 TRP 564 ALA 565 THR 566 TYR 567 LEU 568 ALA 569 SER 570 THR 571 GLU 572 ASN 573 ILE 574 ILE 575 VAL 576 ALA 577 SER 578 PHE 579 ASP 580 GLY 581 ARG 582 GLY 583 SER 584 GLY 585 TYR 586 GLN 587 GLY 588 ASP 589 LYS 590 ILE 591 MET 592 HIS 593 ALA 594 ILE 595 ASN 596 LYS 597 ARG 598 LEU 599 GLY 600 THR 601 LEU 602 GLU 603 VAL 604 GLU 605 ASP 606 GLN 607 ILE 608 GLU 609 ALA 610 ALA 611 ARG 612 GLN 613 PHE 614 LEU 615 LYS 616 MET 617 GLY 618 PHE 619 VAL 620 ASP 621 SER 622 LYS 623 ARG 624 VAL 625 ALA 626 ILE 627 TRP 628 GLY 629 TRP 630 SER 631 TYR 632 GLY 633 GLY 634 TYR 635 VAL 636 THR 637 SER 638 MET 639 VAL 640 LEU 641 GLY 642 SER 643 GLY 644 SER 645 GLY 646 VAL 647 PHE 648 LYS 649 CYS 650 GLY 651 ILE 652 ALA 653 VAL 654 ALA 655 PRO 656 VAL 657 SER 658 ARG 659 TRP 660 GLU 661 TYR 662 TYR 663 ASP 664 SER 665 VAL 666 TYR 667 THR 668 GLU 669 ARG 670 TYR 671 MET 672 GLY 673 LEU 674 PRO 675 THR 676 PRO 677 GLU 678 ASP 679 ASN 680 LEU 681 ASP 682 HIS 683 TYR 684 ARG 685 ASN 686 SER 687 THR 688 VAL 689 MET 690 SER 691 ARG 692 ALA 693 GLU 694 ASN 695 PHE 696 LYS 697 GLN 698 VAL 699 GLU 700 TYR 701 LEU 702 LEU 703 ILE 704 HIS 705 GLY 706 THR 707 ALA 708 ASP 709 ASP 710 ASN 711 VAL 712 HIS 713 PHE 714 GLN 715 GLN 716 SER 717 ALA 718 GLN 719 ILE 720 SER 721 LYS 722 ALA 723 LEU 724 VAL 725 ASP 726 ALA 727 GLY 728 VAL 729 ASP 730 PHE 731 GLN 732 ALA 733 MET 734 TRP 735 TYR 736 THR 737 ASP 738 GLU 739 ASP 740 HIS 741 GLY 742 ILE 743 ALA 744 SER 745 SER 746 THR 747 ALA 748 HIS 749 GLN 750 HIS 751 ILE 752 TYR 753 SER 754 HIS 755 MET 756 SER 757 HIS 758 PHE 759 LEU 760 GLN 761 GLN 762 CYS 763 PHE 764 SER 765 LEU 766 ARG 767

Unit 2

ARG 38 ARG 39 THR 40 TYR 41 THR 42 LEU 43 ALA 44 ASP 45 TYR 46 LEU 47 LYS 48 ASN 49 THR 50 PHE 51 ARG 52 VAL 53 LYS 54 SER 55 TYR 56 SER 57 LEU 58 ARG 59 TRP 60 VAL 61 SER 62 ASP 63 SER 64 GLU 65 TYR 66 LEU 67 TYR 68 LYS 69 GLN 70 GLU 71 ASN 72 ASN 73 ILE 74 LEU 75 LEU 76 PHE 77 ASN 78 ALA 79 GLU 80 HIS 81 GLY 82 ASN 83 SER 84 SER 85 ILE 86 PHE 87 LEU 88 GLU 89 ASN 90 SER 91 THR 92 PHE 93 GLU 94 ILE 95 PHE 96 GLY 97 ASP 98 SER 99 ILE 100 SER 101 ASP 102 TYR 103 SER 104 VAL 105 SER 106 PRO 107 ASP 108 ARG 109 LEU 110 PHE 111 VAL 112 LEU 113 LEU 114 GLU 115 TYR 116 ASN 117 TYR 118 VAL 119 LYS 120 GLN 121 TRP 122 ARG 123 HIS 124 SER 125 TYR 126 THR 127 ALA 128 SER 129 TYR 130 SER 131 ILE 132 TYR 133 ASP 134 LEU 135 ASN 136 LYS 137 ARG 138 GLN 139 LEU 140 ILE 141 THR 142 GLU 143 GLU 144 LYS 145 ILE 146 PRO 147 ASN 148 ASN 149 THR 150 GLN 151 TRP 152 ILE 153 THR 154 TRP 155 SER 156 GLN 157 GLU 158 GLY 159 HIS 160 LYS 161 LEU 162 ALA 163 TYR 164 VAL 165 TRP 166 LYS 167 ASN 168 ASP 169 ILE 170 TYR 171 VAL 172 LYS 173 ILE 174 GLU 175 PRO 176 HIS 177 LEU 178 PRO 179 SER 180 HIS 181 ARG 182 ILE 183 THR 184 SER 185 THR 186 GLY 187 LYS 188 GLU 189 ASN 190 VAL 191 ILE 192 PHE 193 ASN 194 GLY 195 ILE 196 ASN 197 ASP 198 TRP 199 VAL 200 TYR 201 GLU 202 GLU 203 GLU 204 ILE 205 PHE 206 GLY 207 ALA 208 TYR 209 SER 210 ALA 211 LEU 212 TRP 213 TRP 214 SER 215 PRO 216 ASN 217 GLY 218 THR 219 PHE 220 LEU 221 ALA 222 TYR 223 ALA 224 GLN 225 PHE 226 ASN 227 ASP 228 THR 229 GLY 230 VAL 231 PRO 232 LEU 233 ILE 234 GLU 235 TYR 236 SER 237 PHE 238 TYR 239 SER 240 ASP 241 GLU 242 SER 243 LEU 244 GLN 245 TYR 246 PRO 247 LYS 248 THR 249 VAL 250 TRP 251 ILE 252 PRO 253 TYR 254 PRO 255 LYS 256 ALA 257 GLY 258 ALA 259 VAL 260 ASN 261 PRO 262 THR 263 VAL 264 LYS 265 PHE 266 PHE 267 ILE 268 VAL 269 ASN 270 THR 271 ASP 272 SER 273 LEU 274 SER 275 SER 276 THR 277 THR 278 THR 279 THR 280 ILE 281 PRO 282 MET 283 GLN 284 ILE 285 THR 286 ALA 287 PRO 288 ALA 289 SER 290 VAL 291 THR 292 THR 293 GLY 294 ASP 295 HIS 296 TYR 297 LEU 298 CYS 299 ASP 300 VAL 301 ALA 302 TRP 303 VAL 304 SER 305 GLU 306 ASP 307 ARG 308 ILE 309 SER 310 LEU 311 GLN 312 TRP 313 LEU 314 ARG 315 ARG 316 ILE 317 GLN 318 ASN 319 TYR 320 SER 321 VAL 322 MET 323 ALA 324 ILE 325 CYS 326 ASP 327 TYR 328 ASP 329 LYS 330 THR 331 THR 332 LEU 333 VAL 334 TRP 335 ASN 336 CYS 337 PRO 338 THR 339 THR 340 GLN 341 GLU 342 HIS 343 ILE 344 GLU 345 THR 346 SER 347 ALA 348 THR 349 GLY 350 TRP 351 CYS 352 GLY 353 ARG 354 PHE 355 ARG 356 PRO 357 ALA 358 GLU 359 PRO 360 HIS 361 PHE 362 THR 363 SER 364 ASP 365 GLY 366 SER 367 SER 368 PHE 369 TYR 370 LYS 371 ILE 372 VAL 373 SER 374 ASP 375 LYS 376 ASP 377 GLY 378 TYR 379 LYS 380 HIS 381 ILE 382 CYS 383 GLN 384 PHE 385 GLN 386 LYS 387 ASP 388 ARG 389 LYS 390 PRO 391 GLU 392 GLN 393 VAL 394 CYS 395 THR 396 PHE 397 ILE 398 THR 399 LYS 400 GLY 401 ALA 402 TRP 403 GLU 404 VAL 405 ILE 406 SER 407 ILE 408 GLU 409 ALA 410 LEU 411 THR 412 SER 413 ASP 414 TYR 415 LEU 416 TYR 417 TYR 418 ILE 419 SER 420 ASN 421 GLU 422 TYR 423 LYS 424 GLU 425 MET 426 PRO 427 GLY 428 GLY 429 ARG 430 ASN 431 LEU 432 TYR 433 LYS 434 ILE 435 GLN 436 LEU 437 THR 438 ASP 439 HIS 440 THR 441 ASN 442 LYS 443 LYS 444 CYS 445 LEU 446 SER 447 CYS 448 ASP 449 LEU 450 ASN 451 PRO 452 GLU 453 ARG 454 CYS 455 GLN 456 TYR 457 TYR 458 SER 459 VAL 460 SER 461 LEU 462 SER 463 LYS 464 GLU 465 ALA 466 LYS 467 TYR 468 TYR 469 GLN 470 LEU 471 GLY 472 CYS 473 ARG 474 GLY 475 PRO 476 GLY 477 LEU 478 PRO 479 LEU 480 TYR 481 THR 482 LEU 483 HIS 484 ARG 485 SER 486 THR 487 ASP 488 GLN 489 LYS 490 GLU 491 LEU 492 ARG 493 VAL 494 LEU 495 GLU 496 ASP 497 ASN 498 SER 499 ALA 500 LEU 501 ASP 502 LYS 503 MET 504 LEU 505 GLN 506 ASP 507 VAL 508 GLN 509 MET 510 PRO 511 SER 512 LYS 513 LYS 514 LEU 515 ASP 516 PHE 517 ILE 518 VAL 519 LEU 520 ASN 521 GLU 522 THR 523 ARG 524 PHE 525 TRP 526 TYR 527 GLN 528 MET 529 ILE 530 LEU 531 PRO 532 PRO 533 HIS 534 PHE 535 ASP 536 LYS 537 SER 538 LYS 539 LYS 540 TYR 541 PRO 542 LEU 543 LEU 544 ILE 545 ASP 546 VAL 547 TYR 548 ALA 549 GLY 550 PRO 551 CYS 552 SER 553 GLN 554 LYS 555 ALA 556 ASP 557 ALA 558 ALA 559 PHE 560 ARG 561 LEU 562 ASN 563 TRP 564 ALA 565 THR 566 TYR 567 LEU 568 ALA 569 SER 570 THR 571 GLU 572 ASN 573 ILE 574 ILE 575 VAL 576 ALA 577 SER 578 PHE 579 ASP 580 GLY 581 ARG 582 GLY 583 SER 584 GLY 585 TYR 586 GLN 587 GLY 588 ASP 589 LYS 590 ILE 591 MET 592 HIS 593 ALA 594 ILE 595 ASN 596 LYS 597 ARG 598 LEU 599 GLY 600 THR 601 LEU 602 GLU 603 VAL 604 GLU 605 ASP 606 GLN 607 ILE 608 GLU 609 ALA 610 ALA 611 ARG 612 GLN 613 PHE 614 LEU 615 LYS 616 MET 617 GLY 618 PHE 619 VAL 620 ASP 621 SER 622 LYS 623 ARG 624 VAL 625 ALA 626 ILE 627 TRP 628 GLY 629 TRP 630 SER 631 TYR 632 GLY 633 GLY 634 TYR 635 VAL 636 THR 637 SER 638 MET 639 VAL 640 LEU 641 GLY 642 SER 643 GLY 644 SER 645 GLY 646 VAL 647 PHE 648 LYS 649 CYS 650 GLY 651 ILE 652 ALA 653 VAL 654 ALA 655 PRO 656 VAL 657 SER 658 ARG 659 TRP 660 GLU 661 TYR 662 TYR 663 ASP 664 SER 665 VAL 666 TYR 667 THR 668 GLU 669 ARG 670 TYR 671 MET 672 GLY 673 LEU 674 PRO 675 THR 676 PRO 677 GLU 678 ASP 679 ASN 680 LEU 681 ASP 682 HIS 683 TYR 684 ARG 685 ASN 686 SER 687 THR 688 VAL 689 MET 690 SER 691 ARG 692 ALA 693 GLU 694 ASN 695 PHE 696 LYS 697 GLN 698 VAL 699 GLU 700 TYR 701 LEU 702 LEU 703 ILE 704 HIS 705 GLY 706 THR 707 ALA 708 ASP 709 ASP 710 ASN 711 VAL 712 HIS 713 PHE 714 GLN 715 GLN 716 SER 717 ALA 718 GLN 719 ILE 720 SER 721 LYS 722 ALA 723 LEU 724 VAL 725 ASP 726 ALA 727 GLY 728 VAL 729 ASP 730 PHE 731 GLN 732 ALA 733 MET 734 TRP 735 TYR 736 THR 737 ASP 738 GLU 739 ASP 740 HIS 741 GLY 742 ILE 743 ALA 744 SER 745 SER 746 THR 747 ALA 748 HIS 749 GLN 750 HIS 751 ILE 752 TYR 753 SER 754 HIS 755 MET 756 SER 757 HIS 758 PHE 759 LEU 760 GLN 761 GLN 762 CYS 763 PHE 764 SER 765 LEU 766 ARG 767

Ligands

Unit 3

AIA 768