2G5C - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF PREPHENATE DEHYDROGENASE FROM AQUIFEX A
• Keywords: PREPHENATE DEHYDROGENASE, TYRA, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2G5C	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PREPHENATE DEHYDROGENASE	A	278	2134	64
2	Protein	PREPHENATE DEHYDROGENASE	B	280	2160	56
3	Protein	PREPHENATE DEHYDROGENASE	C	278	2142	56
4	Protein	PREPHENATE DEHYDROGENASE	D	278	2142	56
5	Ligand	PREPHENATE DEHYDROGENASE	A	1	0	44
6	Ligand	PREPHENATE DEHYDROGENASE	B	1	0	44
7	Ligand	PREPHENATE DEHYDROGENASE	C	1	0	44
8	Ligand	PREPHENATE DEHYDROGENASE	D	1	0	44
9	Water			501	0	501
total				1619	8578	909

Proteins

Unit 1	MSE 30 GLN 31 ASN 32 VAL 33 LEU 34 ILE 35 VAL 36 GLY 37 VAL 38 GLY 39 PHE 40 MSE 41 GLY 42 GLY 43 SER 44 PHE 45 ALA 46 LYS 47 SER 48 LEU 49 ARG 50 ARG 51 SER 52 GLY 53 PHE 54 LYS 55 GLY 56 LYS 57 ILE 58 TYR 59 GLY 60 TYR 61 ASP 62 ILE 63 ASN 64 PRO 65 GLU 66 SER 67 ILE 68 SER 69 LYS 70 ALA 71 VAL 72 ASP 73 LEU 74 GLY 75 ILE 76 ILE 77 ASP 78 GLU 79 GLY 80 THR 81 THR 82 SER 83 ILE 84 ALA 85 LYS 86 VAL 87 GLU 88 ASP 89 PHE 90 SER 91 PRO 92 ASP 93 PHE 94 VAL 95 MSE 96 LEU 97 SER 98 SER 99 PRO 100 VAL 101 ARG 102 THR 103 PHE 104 ARG 105 GLU 106 ILE 107 ALA 108 LYS 109 LYS 110 LEU 111 SER 112 TYR 113 ILE 114 LEU 115 SER 116 GLU 117 ASP 118 ALA 119 THR 120 VAL 121 THR 122 ASP 123 GLN 124 GLY 125 SER 126 VAL 127 LYS 128 GLY 129 LYS 130 LEU 131 VAL 132 TYR 133 ASP 134 LEU 135 GLU 136 ASN 137 ILE 138 LEU 139 GLY 140 LYS 141 ARG 142 PHE 143 VAL 144 GLY 145 GLY 146 HIS 147 PRO 148 ILE 149 ALA 150 GLY 151 THR 152 GLU 153 LYS 154 SER 155 GLY 156 VAL 157 GLU 158 TYR 159 SER 160 LEU 161 ASP 162 ASN 163 LEU 164 TYR 165 GLU 166 GLY 167 LYS 168 LYS 169 VAL 170 ILE 171 LEU 172 THR 173 PRO 174 THR 175 LYS 176 LYS 177 THR 178 ASP 179 LYS 180 LYS 181 ARG 182 LEU 183 LYS 184 LEU 185 VAL 186 LYS 187 ARG 188 VAL 189 TRP 190 GLU 191 ASP 192 VAL 193 GLY 194 GLY 195 VAL 196 VAL 197 GLU 198 TYR 199 MSE 200 SER 201 PRO 202 GLU 203 LEU 204 HIS 205 ASP 206 TYR 207 VAL 208 PHE 209 GLY 210 VAL 211 VAL 212 SER 213 HIS 214 LEU 215 PRO 216 HIS 217 ALA 218 VAL 219 ALA 220 PHE 221 ALA 222 LEU 223 VAL 224 ASP 225 THR 226 LEU 227 ILE 228 HIS 229 MSE 230 SER 231 THR 232 PRO 233 GLU 234 VAL 235 ASP 236 LEU 237 PHE 238 LYS 239 TYR 240 PRO 241 GLY 242 GLY 243 GLY 244 PHE 245 LYS 246 ASP 247 PHE 248 ALA 252 LYS 253 SER 254 ASP 255 PRO 256 ILE 257 MSE 258 TRP 259 ARG 260 ASP 261 ILE 262 PHE 263 LEU 264 GLU 265 ASN 266 LYS 267 GLU 268 ASN 269 VAL 270 MSE 271 LYS 272 ALA 273 ILE 274 GLU 275 GLY 276 PHE 277 GLU 278 LYS 279 SER 280 LEU 281 ASN 282 HIS 283 LEU 284 LYS 285 GLU 286 LEU 287 ILE 288 VAL 289 ARG 290 GLU 291 ALA 292 GLU 293 GLU 294 GLU 295 LEU 296 VAL 297 GLU 298 TYR 299 LEU 300 LYS 301 GLU 302 VAL 303 LYS 304 ILE 305 LYS 306 ARG 307 MSE 308 GLU 309 ILE 310
Unit 2	GLN 31 ASN 32 VAL 33 LEU 34 ILE 35 VAL 36 GLY 37 VAL 38 GLY 39 PHE 40 MSE 41 GLY 42 GLY 43 SER 44 PHE 45 ALA 46 LYS 47 SER 48 LEU 49 ARG 50 ARG 51 SER 52 GLY 53 PHE 54 LYS 55 GLY 56 LYS 57 ILE 58 TYR 59 GLY 60 TYR 61 ASP 62 ILE 63 ASN 64 PRO 65 GLU 66 SER 67 ILE 68 SER 69 LYS 70 ALA 71 VAL 72 ASP 73 LEU 74 GLY 75 ILE 76 ILE 77 ASP 78 GLU 79 GLY 80 THR 81 THR 82 SER 83 ILE 84 ALA 85 LYS 86 VAL 87 GLU 88 ASP 89 PHE 90 SER 91 PRO 92 ASP 93 PHE 94 VAL 95 MSE 96 LEU 97 SER 98 SER 99 PRO 100 VAL 101 ARG 102 THR 103 PHE 104 ARG 105 GLU 106 ILE 107 ALA 108 LYS 109 LYS 110 LEU 111 SER 112 TYR 113 ILE 114 LEU 115 SER 116 GLU 117 ASP 118 ALA 119 THR 120 VAL 121 THR 122 ASP 123 GLN 124 GLY 125 SER 126 VAL 127 LYS 128 GLY 129 LYS 130 LEU 131 VAL 132 TYR 133 ASP 134 LEU 135 GLU 136 ASN 137 ILE 138 LEU 139 GLY 140 LYS 141 ARG 142 PHE 143 VAL 144 GLY 145 GLY 146 HIS 147 PRO 148 ILE 149 ALA 150 GLY 151 THR 152 GLU 153 LYS 154 SER 155 GLY 156 VAL 157 GLU 158 TYR 159 SER 160 LEU 161 ASP 162 ASN 163 LEU 164 TYR 165 GLU 166 GLY 167 LYS 168 LYS 169 VAL 170 ILE 171 LEU 172 THR 173 PRO 174 THR 175 LYS 176 LYS 177 THR 178 ASP 179 LYS 180 LYS 181 ARG 182 LEU 183 LYS 184 LEU 185 VAL 186 LYS 187 ARG 188 VAL 189 TRP 190 GLU 191 ASP 192 VAL 193 GLY 194 GLY 195 VAL 196 VAL 197 GLU 198 TYR 199 MSE 200 SER 201 PRO 202 GLU 203 LEU 204 HIS 205 ASP 206 TYR 207 VAL 208 PHE 209 GLY 210 VAL 211 VAL 212 SER 213 HIS 214 LEU 215 PRO 216 HIS 217 ALA 218 VAL 219 ALA 220 PHE 221 ALA 222 LEU 223 VAL 224 ASP 225 THR 226 LEU 227 ILE 228 HIS 229 MSE 230 SER 231 THR 232 PRO 233 GLU 234 VAL 235 ASP 236 LEU 237 PHE 238 LYS 239 TYR 240 PRO 241 GLY 242 GLY 243 GLY 244 PHE 245 LYS 246 ASP 247 PHE 248 THR 249 ARG 250 ILE 251 ALA 252 LYS 253 SER 254 ASP 255 PRO 256 ILE 257 MSE 258 TRP 259 ARG 260 ASP 261 ILE 262 PHE 263 LEU 264 GLU 265 ASN 266 LYS 267 GLU 268 ASN 269 VAL 270 MSE 271 LYS 272 ALA 273 ILE 274 GLU 275 GLY 276 PHE 277 GLU 278 LYS 279 SER 280 LEU 281 ASN 282 HIS 283 LEU 284 LYS 285 GLU 286 LEU 287 ILE 288 VAL 289 ARG 290 GLU 291 ALA 292 GLU 293 GLU 294 GLU 295 LEU 296 VAL 297 GLU 298 TYR 299 LEU 300 LYS 301 GLU 302 VAL 303 LYS 304 ILE 305 LYS 306 ARG 307 MSE 308 GLU 309 ILE 310
Unit 3	MSE 30 GLN 31 ASN 32 VAL 33 LEU 34 ILE 35 VAL 36 GLY 37 VAL 38 GLY 39 PHE 40 MSE 41 GLY 42 GLY 43 SER 44 PHE 45 ALA 46 LYS 47 SER 48 LEU 49 ARG 50 ARG 51 SER 52 GLY 53 PHE 54 LYS 55 GLY 56 LYS 57 ILE 58 TYR 59 GLY 60 TYR 61 ASP 62 ILE 63 ASN 64 PRO 65 GLU 66 SER 67 ILE 68 SER 69 LYS 70 ALA 71 VAL 72 ASP 73 LEU 74 GLY 75 ILE 76 ILE 77 ASP 78 GLU 79 GLY 80 THR 81 THR 82 SER 83 ILE 84 ALA 85 LYS 86 VAL 87 GLU 88 ASP 89 PHE 90 SER 91 PRO 92 ASP 93 PHE 94 VAL 95 MSE 96 LEU 97 SER 98 SER 99 PRO 100 VAL 101 ARG 102 THR 103 PHE 104 ARG 105 GLU 106 ILE 107 ALA 108 LYS 109 LYS 110 LEU 111 SER 112 TYR 113 ILE 114 LEU 115 SER 116 GLU 117 ASP 118 ALA 119 THR 120 VAL 121 THR 122 ASP 123 GLN 124 GLY 125 SER 126 VAL 127 LYS 128 GLY 129 LYS 130 LEU 131 VAL 132 TYR 133 ASP 134 LEU 135 GLU 136 ASN 137 ILE 138 LEU 139 GLY 140 LYS 141 ARG 142 PHE 143 VAL 144 GLY 145 GLY 146 HIS 147 PRO 148 ILE 149 ALA 150 GLY 151 THR 152 GLU 153 LYS 154 SER 155 GLY 156 VAL 157 GLU 158 TYR 159 SER 160 LEU 161 ASP 162 ASN 163 LEU 164 TYR 165 GLU 166 GLY 167 LYS 168 LYS 169 VAL 170 ILE 171 LEU 172 THR 173 PRO 174 THR 175 LYS 176 LYS 177 THR 178 ASP 179 LYS 180 LYS 181 ARG 182 LEU 183 LYS 184 LEU 185 VAL 186 LYS 187 ARG 188 VAL 189 TRP 190 GLU 191 ASP 192 VAL 193 GLY 194 GLY 195 VAL 196 VAL 197 GLU 198 TYR 199 MSE 200 SER 201 PRO 202 GLU 203 LEU 204 HIS 205 ASP 206 TYR 207 VAL 208 PHE 209 GLY 210 VAL 211 VAL 212 SER 213 HIS 214 LEU 215 PRO 216 HIS 217 ALA 218 VAL 219 ALA 220 PHE 221 ALA 222 LEU 223 VAL 224 ASP 225 THR 226 LEU 227 ILE 228 HIS 229 MSE 230 SER 231 THR 232 PRO 233 GLU 234 VAL 235 ASP 236 LEU 237 PHE 238 LYS 239 TYR 240 PRO 241 GLY 242 GLY 243 GLY 244 PHE 245 LYS 246 ASP 247 PHE 248 THR 249 ARG 250 ILE 251 ALA 252 LYS 253 SER 254 ASP 255 PRO 256 ILE 257 MSE 258 TRP 259 ARG 260 ASP 261 ILE 262 PHE 263 LEU 264 GLU 265 ASN 266 LYS 267 GLU 268 ASN 269 VAL 270 MSE 271 LYS 272 ALA 273 ILE 274 GLU 275 GLY 276 PHE 277 GLU 278 LYS 279 SER 280 LEU 281 ASN 282 HIS 283 LEU 284 LYS 285 GLU 286 LEU 287 ILE 288 VAL 289 ARG 290 GLU 291 ALA 292 GLU 293 GLU 294 GLU 295 LEU 296 VAL 297 GLU 298 TYR 299 LEU 300 LYS 301 GLU 302 VAL 303 LYS 304 ILE 305 LYS 306 ARG 307
Unit 4	MSE 30 GLN 31 ASN 32 VAL 33 LEU 34 ILE 35 VAL 36 GLY 37 VAL 38 GLY 39 PHE 40 MSE 41 GLY 42 GLY 43 SER 44 PHE 45 ALA 46 LYS 47 SER 48 LEU 49 ARG 50 ARG 51 SER 52 GLY 53 PHE 54 LYS 55 GLY 56 LYS 57 ILE 58 TYR 59 GLY 60 TYR 61 ASP 62 ILE 63 ASN 64 PRO 65 GLU 66 SER 67 ILE 68 SER 69 LYS 70 ALA 71 VAL 72 ASP 73 LEU 74 GLY 75 ILE 76 ILE 77 ASP 78 GLU 79 GLY 80 THR 81 THR 82 SER 83 ILE 84 ALA 85 LYS 86 VAL 87 GLU 88 ASP 89 PHE 90 SER 91 PRO 92 ASP 93 PHE 94 VAL 95 MSE 96 LEU 97 SER 98 SER 99 PRO 100 VAL 101 ARG 102 THR 103 PHE 104 ARG 105 GLU 106 ILE 107 ALA 108 LYS 109 LYS 110 LEU 111 SER 112 TYR 113 ILE 114 LEU 115 SER 116 GLU 117 ASP 118 ALA 119 THR 120 VAL 121 THR 122 ASP 123 GLN 124 GLY 125 SER 126 VAL 127 LYS 128 GLY 129 LYS 130 LEU 131 VAL 132 TYR 133 ASP 134 LEU 135 GLU 136 ASN 137 ILE 138 LEU 139 GLY 140 LYS 141 ARG 142 PHE 143 VAL 144 GLY 145 GLY 146 HIS 147 PRO 148 ILE 149 ALA 150 GLY 151 THR 152 GLU 153 LYS 154 SER 155 GLY 156 VAL 157 GLU 158 TYR 159 SER 160 LEU 161 ASP 162 ASN 163 LEU 164 TYR 165 GLU 166 GLY 167 LYS 168 LYS 169 VAL 170 ILE 171 LEU 172 THR 173 PRO 174 THR 175 LYS 176 LYS 177 THR 178 ASP 179 LYS 180 LYS 181 ARG 182 LEU 183 LYS 184 LEU 185 VAL 186 LYS 187 ARG 188 VAL 189 TRP 190 GLU 191 ASP 192 VAL 193 GLY 194 GLY 195 VAL 196 VAL 197 GLU 198 TYR 199 MSE 200 SER 201 PRO 202 GLU 203 LEU 204 HIS 205 ASP 206 TYR 207 VAL 208 PHE 209 GLY 210 VAL 211 VAL 212 SER 213 HIS 214 LEU 215 PRO 216 HIS 217 ALA 218 VAL 219 ALA 220 PHE 221 ALA 222 LEU 223 VAL 224 ASP 225 THR 226 LEU 227 ILE 228 HIS 229 MSE 230 SER 231 THR 232 PRO 233 GLU 234 VAL 235 ASP 236 LEU 237 PHE 238 LYS 239 TYR 240 PRO 241 GLY 242 GLY 243 GLY 244 PHE 245 LYS 246 ASP 247 PHE 248 THR 249 ARG 250 ILE 251 ALA 252 LYS 253 SER 254 ASP 255 PRO 256 ILE 257 MSE 258 TRP 259 ARG 260 ASP 261 ILE 262 PHE 263 LEU 264 GLU 265 ASN 266 LYS 267 GLU 268 ASN 269 VAL 270 MSE 271 LYS 272 ALA 273 ILE 274 GLU 275 GLY 276 PHE 277 GLU 278 LYS 279 SER 280 LEU 281 ASN 282 HIS 283 LEU 284 LYS 285 GLU 286 LEU 287 ILE 288 VAL 289 ARG 290 GLU 291 ALA 292 GLU 293 GLU 294 GLU 295 LEU 296 VAL 297 GLU 298 TYR 299 LEU 300 LYS 301 GLU 302 VAL 303 LYS 304 ILE 305 LYS 306 ARG 307

Ligands

Unit 5	NAD 3686
Unit 6	NAD 4686
Unit 7	NAD 5686
Unit 8	NAD 6686