2G3L - Sequence, Chains, Asymmetric and Biological Units

• Title: THEORETICAL MODEL OF TETRAMER OF HIV-1 INTEGRASE WITH TWO VIRAL LTR ENDS
• Keywords: PROTEIN-DNA COMPLEX
• Experiment: theoretical model
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2G3L	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GAG-POL POLYPROTEIN (PR160GAG-POL) INTEGRASE (IN)	A	270	4252	0
2	Protein	GAG-POL POLYPROTEIN (PR160GAG-POL) INTEGRASE (IN)	B	270	4252	0
3	Protein	GAG-POL POLYPROTEIN (PR160GAG-POL) INTEGRASE (IN)	C	270	4252	0
4	Protein	GAG-POL POLYPROTEIN (PR160GAG-POL) INTEGRASE (IN)	D	270	4252	0
5	DNA		E	18	574	0
6	DNA		F	20	633	0
7	DNA		G	18	574	0
8	DNA		H	20	633	0
9	Ligand			4	0	4
10	Ligand	GAG-POL POLYPROTEIN (PR160GAG-POL) INTEGRASE (IN)	A	1	0	1
11	Ligand	ACTGCTAGAGATTTTCCACA	H	1	0	1
12	Ligand			6	0	6
total				1168	19422	12

Proteins

Unit 1	PHE 1 LEU 2 ASP 3 GLY 4 ILE 5 ASP 6 LYS 7 ALA 8 GLN 9 GLU 10 GLU 11 HIS 12 GLU 13 LYS 14 TYR 15 HIS 16 SER 17 ASN 18 TRP 19 ARG 20 ALA 21 MET 22 ALA 23 SER 24 ASP 25 PHE 26 ASN 27 LEU 28 PRO 29 PRO 30 VAL 31 VAL 32 ALA 33 LYS 34 GLU 35 ILE 36 VAL 37 ALA 38 SER 39 CYS 40 ASP 41 LYS 42 CYS 43 GLN 44 LEU 45 LYS 46 GLY 47 GLU 48 ALA 49 MET 50 HIS 51 GLY 52 GLN 53 VAL 54 ASP 55 CYS 56 SER 57 PRO 58 GLY 59 ILE 60 TRP 61 GLN 62 LEU 63 ASP 64 CYS 65 THR 66 HIS 67 LEU 68 GLU 69 GLY 70 LYS 71 VAL 72 ILE 73 LEU 74 VAL 75 ALA 76 VAL 77 HIS 78 VAL 79 ALA 80 SER 81 GLY 82 TYR 83 ILE 84 GLU 85 ALA 86 GLU 87 VAL 88 ILE 89 PRO 90 ALA 91 GLU 92 THR 93 GLY 94 GLN 95 GLU 96 THR 97 ALA 98 TYR 99 PHE 100 LEU 101 LEU 102 LYS 103 LEU 104 ALA 105 GLY 106 ARG 107 TRP 108 PRO 109 VAL 110 LYS 111 THR 112 VAL 113 HIS 114 THR 115 ASP 116 ASN 117 GLY 118 SER 119 ASN 120 PHE 121 THR 122 SER 123 THR 124 THR 125 VAL 126 LYS 127 ALA 128 ALA 129 CYS 130 ASP 131 TRP 132 ALA 133 GLY 134 ILE 135 LYS 136 GLN 137 GLU 138 ASP 139 GLY 140 ILE 141 PRO 142 TYR 143 ASN 144 PRO 145 GLN 146 SER 147 GLN 148 GLY 149 VAL 150 ILE 151 GLU 152 SER 153 MET 154 ASN 155 LYS 156 GLU 157 LEU 158 LYS 159 LYS 160 ILE 161 ILE 162 GLY 163 GLN 164 VAL 165 ARG 166 ASP 167 GLN 168 ALA 169 GLU 170 HIS 171 LEU 172 LYS 173 THR 174 ALA 175 VAL 176 GLN 177 MET 178 ALA 179 VAL 180 PHE 181 ILE 182 HIS 183 ASN 184 LYS 185 LYS 186 ARG 187 LYS 188 GLY 189 GLY 190 ILE 191 GLY 192 GLY 193 TYR 194 SER 195 ALA 196 GLY 197 GLU 198 ARG 199 ILE 200 VAL 201 ASP 202 ILE 203 ILE 204 ALA 205 THR 206 ASP 207 ILE 208 GLN 209 THR 210 LYS 211 GLU 212 LEU 213 GLN 214 LYS 215 GLN 216 ILE 217 THR 218 LYS 219 ILE 220 GLN 221 ASN 222 PHE 223 ARG 224 VAL 225 TYR 226 TYR 227 ARG 228 ASP 229 SER 230 ARG 231 ASN 232 SER 233 LEU 234 TRP 235 LYS 236 GLY 237 PRO 238 ALA 239 LYS 240 LEU 241 LEU 242 TRP 243 LYS 244 GLY 245 GLU 246 GLY 247 ALA 248 VAL 249 VAL 250 ILE 251 GLN 252 ASP 253 ASN 254 SER 255 ASP 256 ILE 257 LYS 258 VAL 259 VAL 260 PRO 261 ARG 262 ARG 263 LYS 264 ALA 265 LYS 266 ILE 267 ILE 268 ARG 269 ASP 270
Unit 2	PHE 301 LEU 302 ASP 303 GLY 304 ILE 305 ASP 306 LYS 307 ALA 308 GLN 309 GLU 310 GLU 311 HIS 312 GLU 313 LYS 314 TYR 315 HIS 316 SER 317 ASN 318 TRP 319 ARG 320 ALA 321 MET 322 ALA 323 SER 324 ASP 325 PHE 326 ASN 327 LEU 328 PRO 329 PRO 330 VAL 331 VAL 332 ALA 333 LYS 334 GLU 335 ILE 336 VAL 337 ALA 338 SER 339 CYS 340 ASP 341 LYS 342 CYS 343 GLN 344 LEU 345 LYS 346 GLY 347 GLU 348 ALA 349 MET 350 HIS 351 GLY 352 GLN 353 VAL 354 ASP 355 CYS 356 SER 357 PRO 358 GLY 359 ILE 360 TRP 361 GLN 362 LEU 363 ASP 364 CYS 365 THR 366 HIS 367 LEU 368 GLU 369 GLY 370 LYS 371 VAL 372 ILE 373 LEU 374 VAL 375 ALA 376 VAL 377 HIS 378 VAL 379 ALA 380 SER 381 GLY 382 TYR 383 ILE 384 GLU 385 ALA 386 GLU 387 VAL 388 ILE 389 PRO 390 ALA 391 GLU 392 THR 393 GLY 394 GLN 395 GLU 396 THR 397 ALA 398 TYR 399 PHE 400 LEU 401 LEU 402 LYS 403 LEU 404 ALA 405 GLY 406 ARG 407 TRP 408 PRO 409 VAL 410 LYS 411 THR 412 VAL 413 HIS 414 THR 415 ASP 416 ASN 417 GLY 418 SER 419 ASN 420 PHE 421 THR 422 SER 423 THR 424 THR 425 VAL 426 LYS 427 ALA 428 ALA 429 CYS 430 ASP 431 TRP 432 ALA 433 GLY 434 ILE 435 LYS 436 GLN 437 GLU 438 ASP 439 GLY 440 ILE 441 PRO 442 TYR 443 ASN 444 PRO 445 GLN 446 SER 447 GLN 448 GLY 449 VAL 450 ILE 451 GLU 452 SER 453 MET 454 ASN 455 LYS 456 GLU 457 LEU 458 LYS 459 LYS 460 ILE 461 ILE 462 GLY 463 GLN 464 VAL 465 ARG 466 ASP 467 GLN 468 ALA 469 GLU 470 HIS 471 LEU 472 LYS 473 THR 474 ALA 475 VAL 476 GLN 477 MET 478 ALA 479 VAL 480 PHE 481 ILE 482 HIS 483 ASN 484 LYS 485 LYS 486 ARG 487 LYS 488 GLY 489 GLY 490 ILE 491 GLY 492 GLY 493 TYR 494 SER 495 ALA 496 GLY 497 GLU 498 ARG 499 ILE 500 VAL 501 ASP 502 ILE 503 ILE 504 ALA 505 THR 506 ASP 507 ILE 508 GLN 509 THR 510 LYS 511 GLU 512 LEU 513 GLN 514 LYS 515 GLN 516 ILE 517 THR 518 LYS 519 ILE 520 GLN 521 ASN 522 PHE 523 ARG 524 VAL 525 TYR 526 TYR 527 ARG 528 ASP 529 SER 530 ARG 531 ASN 532 SER 533 LEU 534 TRP 535 LYS 536 GLY 537 PRO 538 ALA 539 LYS 540 LEU 541 LEU 542 TRP 543 LYS 544 GLY 545 GLU 546 GLY 547 ALA 548 VAL 549 VAL 550 ILE 551 GLN 552 ASP 553 ASN 554 SER 555 ASP 556 ILE 557 LYS 558 VAL 559 VAL 560 PRO 561 ARG 562 ARG 563 LYS 564 ALA 565 LYS 566 ILE 567 ILE 568 ARG 569 ASP 570
Unit 3	PHE 601 LEU 602 ASP 603 GLY 604 ILE 605 ASP 606 LYS 607 ALA 608 GLN 609 GLU 610 GLU 611 HIS 612 GLU 613 LYS 614 TYR 615 HIS 616 SER 617 ASN 618 TRP 619 ARG 620 ALA 621 MET 622 ALA 623 SER 624 ASP 625 PHE 626 ASN 627 LEU 628 PRO 629 PRO 630 VAL 631 VAL 632 ALA 633 LYS 634 GLU 635 ILE 636 VAL 637 ALA 638 SER 639 CYS 640 ASP 641 LYS 642 CYS 643 GLN 644 LEU 645 LYS 646 GLY 647 GLU 648 ALA 649 MET 650 HIS 651 GLY 652 GLN 653 VAL 654 ASP 655 CYS 656 SER 657 PRO 658 GLY 659 ILE 660 TRP 661 GLN 662 LEU 663 ASP 664 CYS 665 THR 666 HIS 667 LEU 668 GLU 669 GLY 670 LYS 671 VAL 672 ILE 673 LEU 674 VAL 675 ALA 676 VAL 677 HIS 678 VAL 679 ALA 680 SER 681 GLY 682 TYR 683 ILE 684 GLU 685 ALA 686 GLU 687 VAL 688 ILE 689 PRO 690 ALA 691 GLU 692 THR 693 GLY 694 GLN 695 GLU 696 THR 697 ALA 698 TYR 699 PHE 700 LEU 701 LEU 702 LYS 703 LEU 704 ALA 705 GLY 706 ARG 707 TRP 708 PRO 709 VAL 710 LYS 711 THR 712 VAL 713 HIS 714 THR 715 ASP 716 ASN 717 GLY 718 SER 719 ASN 720 PHE 721 THR 722 SER 723 THR 724 THR 725 VAL 726 LYS 727 ALA 728 ALA 729 CYS 730 ASP 731 TRP 732 ALA 733 GLY 734 ILE 735 LYS 736 GLN 737 GLU 738 ASP 739 GLY 740 ILE 741 PRO 742 TYR 743 ASN 744 PRO 745 GLN 746 SER 747 GLN 748 GLY 749 VAL 750 ILE 751 GLU 752 SER 753 MET 754 ASN 755 LYS 756 GLU 757 LEU 758 LYS 759 LYS 760 ILE 761 ILE 762 GLY 763 GLN 764 VAL 765 ARG 766 ASP 767 GLN 768 ALA 769 GLU 770 HIS 771 LEU 772 LYS 773 THR 774 ALA 775 VAL 776 GLN 777 MET 778 ALA 779 VAL 780 PHE 781 ILE 782 HIS 783 ASN 784 LYS 785 LYS 786 ARG 787 LYS 788 GLY 789 GLY 790 ILE 791 GLY 792 GLY 793 TYR 794 SER 795 ALA 796 GLY 797 GLU 798 ARG 799 ILE 800 VAL 801 ASP 802 ILE 803 ILE 804 ALA 805 THR 806 ASP 807 ILE 808 GLN 809 THR 810 LYS 811 GLU 812 LEU 813 GLN 814 LYS 815 GLN 816 ILE 817 THR 818 LYS 819 ILE 820 GLN 821 ASN 822 PHE 823 ARG 824 VAL 825 TYR 826 TYR 827 ARG 828 ASP 829 SER 830 ARG 831 ASN 832 SER 833 LEU 834 TRP 835 LYS 836 GLY 837 PRO 838 ALA 839 LYS 840 LEU 841 LEU 842 TRP 843 LYS 844 GLY 845 GLU 846 GLY 847 ALA 848 VAL 849 VAL 850 ILE 851 GLN 852 ASP 853 ASN 854 SER 855 ASP 856 ILE 857 LYS 858 VAL 859 VAL 860 PRO 861 ARG 862 ARG 863 LYS 864 ALA 865 LYS 866 ILE 867 ILE 868 ARG 869 ASP 870
Unit 4	PHE 901 LEU 902 ASP 903 GLY 904 ILE 905 ASP 906 LYS 907 ALA 908 GLN 909 GLU 910 GLU 911 HIS 912 GLU 913 LYS 914 TYR 915 HIS 916 SER 917 ASN 918 TRP 919 ARG 920 ALA 921 MET 922 ALA 923 SER 924 ASP 925 PHE 926 ASN 927 LEU 928 PRO 929 PRO 930 VAL 931 VAL 932 ALA 933 LYS 934 GLU 935 ILE 936 VAL 937 ALA 938 SER 939 CYS 940 ASP 941 LYS 942 CYS 943 GLN 944 LEU 945 LYS 946 GLY 947 GLU 948 ALA 949 MET 950 HIS 951 GLY 952 GLN 953 VAL 954 ASP 955 CYS 956 SER 957 PRO 958 GLY 959 ILE 960 TRP 961 GLN 962 LEU 963 ASP 964 CYS 965 THR 966 HIS 967 LEU 968 GLU 969 GLY 970 LYS 971 VAL 972 ILE 973 LEU 974 VAL 975 ALA 976 VAL 977 HIS 978 VAL 979 ALA 980 SER 981 GLY 982 TYR 983 ILE 984 GLU 985 ALA 986 GLU 987 VAL 988 ILE 989 PRO 990 ALA 991 GLU 992 THR 993 GLY 994 GLN 995 GLU 996 THR 997 ALA 998 TYR 999 PHE 1000 LEU 1001 LEU 1002 LYS 1003 LEU 1004 ALA 1005 GLY 1006 ARG 1007 TRP 1008 PRO 1009 VAL 1010 LYS 1011 THR 1012 VAL 1013 HIS 1014 THR 1015 ASP 1016 ASN 1017 GLY 1018 SER 1019 ASN 1020 PHE 1021 THR 1022 SER 1023 THR 1024 THR 1025 VAL 1026 LYS 1027 ALA 1028 ALA 1029 CYS 1030 ASP 1031 TRP 1032 ALA 1033 GLY 1034 ILE 1035 LYS 1036 GLN 1037 GLU 1038 ASP 1039 GLY 1040 ILE 1041 PRO 1042 TYR 1043 ASN 1044 PRO 1045 GLN 1046 SER 1047 GLN 1048 GLY 1049 VAL 1050 ILE 1051 GLU 1052 SER 1053 MET 1054 ASN 1055 LYS 1056 GLU 1057 LEU 1058 LYS 1059 LYS 1060 ILE 1061 ILE 1062 GLY 1063 GLN 1064 VAL 1065 ARG 1066 ASP 1067 GLN 1068 ALA 1069 GLU 1070 HIS 1071 LEU 1072 LYS 1073 THR 1074 ALA 1075 VAL 1076 GLN 1077 MET 1078 ALA 1079 VAL 1080 PHE 1081 ILE 1082 HIS 1083 ASN 1084 LYS 1085 LYS 1086 ARG 1087 LYS 1088 GLY 1089 GLY 1090 ILE 1091 GLY 1092 GLY 1093 TYR 1094 SER 1095 ALA 1096 GLY 1097 GLU 1098 ARG 1099 ILE 1100 VAL 1101 ASP 1102 ILE 1103 ILE 1104 ALA 1105 THR 1106 ASP 1107 ILE 1108 GLN 1109 THR 1110 LYS 1111 GLU 1112 LEU 1113 GLN 1114 LYS 1115 GLN 1116 ILE 1117 THR 1118 LYS 1119 ILE 1120 GLN 1121 ASN 1122 PHE 1123 ARG 1124 VAL 1125 TYR 1126 TYR 1127 ARG 1128 ASP 1129 SER 1130 ARG 1131 ASN 1132 SER 1133 LEU 1134 TRP 1135 LYS 1136 GLY 1137 PRO 1138 ALA 1139 LYS 1140 LEU 1141 LEU 1142 TRP 1143 LYS 1144 GLY 1145 GLU 1146 GLY 1147 ALA 1148 VAL 1149 VAL 1150 ILE 1151 GLN 1152 ASP 1153 ASN 1154 SER 1155 ASP 1156 ILE 1157 LYS 1158 VAL 1159 VAL 1160 PRO 1161 ARG 1162 ARG 1163 LYS 1164 ALA 1165 LYS 1166 ILE 1167 ILE 1168 ARG 1169 ASP 1170

Nucleic acids

Unit 5	T 2001 G 2002 T 2003 G 2004 G 2005 A 2006 A 2007 A 2008 A 2009 T 2010 C 2011 T 2012 C 2013 T 2014 A 2015 G 2016 C 2017 A 2018
Unit 6	A 2021 C 2022 T 2023 G 2024 C 2025 T 2026 A 2027 G 2028 A 2029 G 2030 A 2031 T 2032 T 2033 T 2034 T 2035 C 2036 C 2037 A 2038 C 2039 A 2040
Unit 7	T 2101 G 2102 T 2103 G 2104 G 2105 A 2106 A 2107 A 2108 A 2109 T 2110 C 2111 T 2112 C 2113 T 2114 A 2115 G 2116 C 2117 A 2118
Unit 8	A 2121 C 2122 T 2123 G 2124 C 2125 T 2126 A 2127 G 2128 A 2129 G 2130 A 2131 T 2132 T 2133 T 2134 T 2135 C 2136 C 2137 A 2138 C 2139 A 2140

Ligands

Unit 9	ZN 1401 ZN 1402 ZN 1403 ZN 1404
Unit 10	K 1451
Unit 11	K 1452
Unit 12	K 1453 K 1454 MG 1551 MG 1552 MG 1553 MG 1554