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Sequence, Chains, Asymmetric and Biological Units

Title A DUAL MODE OF RNA RECOGNITION BY THE RBMY PROTEIN
Keywords RNA BINDING PROTEIN, PROTEIN-RNA COMPLEX, RNA STEM-LOOP, STR PROTEIN-RNA COMPLEX
Experiment NMR
Number of Models  17


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2FY1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    B 21 674 0
2  Protein   RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 A1  A 108 1669 0
total       129 2343 0

Proteins
Unit 2 MET1 VAL2 GLU3 ALA4 ASP5 HIS6 PRO7 GLY8 LYS9 LEU10 PHE11 ILE12 GLY13 GLY14 LEU15 ASN16 ARG17 GLU18 THR19 ASN20 GLU21 LYS22 MET23 LEU24 LYS25 ALA26 VAL27 PHE28 GLY29 LYS30 HIS31 GLY32 PRO33 ILE34 SER35 GLU36 VAL37 LEU38 LEU39 ILE40 LYS41 ASP42 ARG43 THR44 SER45 LYS46 SER47 ARG48 GLY49 PHE50 ALA51 PHE52 ILE53 THR54 PHE55 GLU56 ASN57 PRO58 ALA59 ASP60 ALA61 LYS62 ASN63 ALA64 ALA65 LYS66 ASP67 MET68 ASN69 GLY70 LYS71 SER72 LEU73 HIS74 GLY75 LYS76 ALA77 ILE78 LYS79 VAL80 GLU81 GLN82 ALA83 LYS84 LYS85 PRO86 SER87 PHE88 GLN89 SER90 GLY91 GLY92 ARG93 ARG94 ARG95 PRO96 PRO97 ALA98 SER99 SER100 ARG101 ASN102 ARG103 SER104 PRO105 SER106 GLY107 SER108

Nucleic acids
Unit 1 G109 G110 A111 C112 U113 G114 U115 C116 C117 A118 C119 A120 A121 G122 A123 C124 A125 G126 U127 C128 C129

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany