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Title | CRYSTAL STRUCTURE OF HEPARINASE II COMPLEXED WITH A DISACCHA PRODUCT | |
Keywords | ALPHA PLUS BETA, SUGAR BINDING PROTEIN | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2FUT | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | HEPARINASE II PROTEIN | A | 743 | 5789 | 160 |
2 | Protein | HEPARINASE II PROTEIN | B | 743 | 5788 | 160 |
3 | Ligand | C | 2 | 0 | 35 | |
4 | Ligand | D | 2 | 0 | 35 | |
5 | Ligand | HEPARINASE II PROTEIN | A | 1 | 0 | 1 |
6 | Ligand | HEPARINASE II PROTEIN | B | 1 | 0 | 1 |
7 | Water | 783 | 0 | 783 | ||
total | 2275 | 11577 | 1175 |
Unit 1 | ASP30 VAL31 VAL32 TRP33 LYS34 ASP35 VAL36 ASP37 GLY38 VAL39 SER40 MSE41 PRO42 ILE43 PRO44 PRO45 LYS46 THR47 HIS48 PRO49 ARG50 LEU51 TYR52 LEU53 ARG54 GLU55 GLN56 GLN57 VAL58 PRO59 ASP60 LEU61 LYS62 ASN63 ARG64 MSE65 ASN66 ASP67 PRO68 LYS69 LEU70 LYS71 LYS72 VAL73 TRP74 ALA75 ASP76 MSE77 ILE78 LYS79 MSE80 GLN81 GLU82 ASP83 TRP84 LYS85 PRO86 ALA87 ASP88 ILE89 PRO90 GLU91 VAL92 LYS93 ASP94 PHE95 ARG96 PHE97 TYR98 PHE99 ASN100 GLN101 LYS102 GLY103 LEU104 THR105 VAL106 ARG107 VAL108 GLU109 LEU110 MSE111 ALA112 LEU113 ASN114 TYR115 LEU116 MSE117 THR118 LYS119 ASP120 PRO121 LYS122 VAL123 GLY124 ARG125 GLU126 ALA127 ILE128 THR129 SER130 ILE131 ILE132 ASP133 THR134 LEU135 GLU136 THR137 ALA138 THR139 PHE140 LYS141 PRO142 ALA143 GLY144 ASP145 ILE146 SER147 ARG148 GLY149 ILE150 GLY151 LEU152 PHE153 MSE154 VAL155 THR156 GLY157 ALA158 ILE159 VAL160 TYR161 ASP162 TRP163 CYS164 TYR165 ASP166 GLN167 LEU168 LYS169 PRO170 GLU171 GLU172 LYS173 THR174 ARG175 PHE176 VAL177 LYS178 ALA179 PHE180 VAL181 ARG182 LEU183 ALA184 LYS185 MSE186 LEU187 GLU188 CYS189 GLY190 TYR191 PRO192 PRO193 VAL194 LYS195 ASP196 LYS197 SER198 ILE199 VAL200 GLY201 HIS202 ALA203 SER204 GLU205 TRP206 MSE207 ILE208 MSE209 ARG210 ASP211 LEU212 LEU213 SER214 VAL215 GLY216 ILE217 ALA218 ILE219 TYR220 ASP221 GLU222 PHE223 PRO224 GLU225 MSE226 TYR227 ASN228 LEU229 ALA230 ALA231 GLY232 ARG233 PHE234 PHE235 LYS236 GLU237 HIS238 LEU239 VAL240 ALA241 ARG242 ASN243 TRP244 PHE245 TYR246 PRO247 SER248 HIS249 ASN250 TYR251 HIS252 GLN253 GLY254 MSE255 SER256 TYR257 LEU258 ASN259 VAL260 ARG261 PHE262 THR263 ASN264 ASP265 LEU266 PHE267 ALA268 LEU269 TRP270 ILE271 LEU272 ASP273 ARG274 MSE275 GLY276 ALA277 GLY278 ASN279 VAL280 PHE281 ASN282 PRO283 GLY284 GLN285 GLN286 PHE287 ILE288 LEU289 TYR290 ASP291 ALA292 ILE293 TYR294 LYS295 ARG296 ARG297 PRO298 ASP299 GLY300 GLN301 ILE302 LEU303 ALA304 GLY305 GLY306 ASP307 VAL308 ASP309 TYR310 SER311 ARG312 LYS313 LYS314 PRO315 LYS316 TYR317 TYR318 THR319 MSE320 PRO321 ALA322 LEU323 LEU324 ALA325 GLY326 SER327 TYR328 TYR329 LYS330 ASP331 GLU332 TYR333 LEU334 ASN335 TYR336 GLU337 PHE338 LEU339 LYS340 ASP341 PRO342 ASN343 VAL344 GLU345 PRO346 HIS347 CYS348 LYS349 LEU350 PHE351 GLU352 PHE353 LEU354 TRP355 ARG356 ASP357 THR358 GLN359 LEU360 GLY361 SER362 ARG363 LYS364 PRO365 ASP366 ASP367 LEU368 PRO369 LEU370 SER371 ARG372 TYR373 SER374 GLY375 SER376 PRO377 PHE378 GLY379 TRP380 MSE381 ILE382 ALA383 ARG384 THR385 GLY386 TRP387 GLY388 PRO389 GLU390 SER391 VAL392 ILE393 ALA394 GLU395 MSE396 LYS397 VAL398 ASN399 GLU400 TYR401 SER402 PHE403 LEU404 ASN405 HIS406 GLN407 HIS408 GLN409 ASP410 ALA411 GLY412 ALA413 PHE414 GLN415 ILE416 TYR417 TYR418 LYS419 GLY420 PRO421 LEU422 ALA423 ILE424 ASP425 ALA426 GLY427 SER428 TYR429 THR430 GLY431 SER432 SER433 GLY434 GLY435 TYR436 ASN437 SER438 PRO439 HIS440 ASN441 LYS442 ASN443 PHE444 PHE445 LYS446 ARG447 THR448 ILE449 ALA450 HIS451 ASN452 SER453 LEU454 LEU455 ILE456 TYR457 ASP458 PRO459 LYS460 GLU461 THR462 PHE463 SER464 SER465 SER466 GLY467 TYR468 GLY469 GLY470 SER471 ASP472 HIS473 THR474 ASP475 PHE476 ALA477 ALA478 ASN479 ASP480 GLY481 GLY482 GLN483 ARG484 LEU485 PRO486 GLY487 LYS488 GLY489 TRP490 ILE491 ALA492 PRO493 ARG494 ASP495 LEU496 LYS497 GLU498 MSE499 LEU500 ALA501 GLY502 ASP503 PHE504 ARG505 THR506 GLY507 LYS508 ILE509 LEU510 ALA511 GLN512 GLY513 PHE514 GLY515 PRO516 ASP517 ASN518 GLN519 THR520 PRO521 ASP522 TYR523 THR524 TYR525 LEU526 LYS527 GLY528 ASP529 ILE530 THR531 ALA532 ALA533 TYR534 SER535 ALA536 LYS537 VAL538 LYS539 GLU540 VAL541 LYS542 ARG543 SER544 PHE545 LEU546 PHE547 LEU548 ASN549 LEU550 LYS551 ASP552 ALA553 LYS554 VAL555 PRO556 ALA557 ALA558 MSE559 ILE560 VAL561 PHE562 ASP563 LYS564 VAL565 VAL566 ALA567 SER568 ASN569 PRO570 ASP571 PHE572 LYS573 LYS574 PHE575 TRP576 LEU577 LEU578 HIS579 SER580 ILE581 GLU582 GLN583 PRO584 GLU585 ILE586 LYS587 GLY588 ASN589 GLN590 ILE591 THR592 ILE593 LYS594 ARG595 THR596 LYS597 ASN598 GLY599 ASP600 SER601 GLY602 MSE603 LEU604 VAL605 ASN606 THR607 ALA608 LEU609 LEU610 PRO611 ASP612 ALA613 ALA614 ASN615 SER616 ASN617 ILE618 THR619 SER620 ILE621 GLY622 GLY623 LYS624 GLY625 LYS626 ASP627 PHE628 TRP629 VAL630 PHE631 GLY632 THR633 ASN634 TYR635 THR636 ASN637 ASP638 PRO639 LYS640 PRO641 GLY642 THR643 ASP644 GLU645 ALA646 LEU647 GLU648 ARG649 GLY650 GLU651 TRP652 ARG653 VAL654 GLU655 ILE656 THR657 PRO658 LYS659 LYS660 ALA661 ALA662 ALA663 GLU664 ASP665 TYR666 TYR667 LEU668 ASN669 VAL670 ILE671 GLN672 ILE673 ALA674 ASP675 ASN676 THR677 GLN678 GLN679 LYS680 LEU681 HIS682 GLU683 VAL684 LYS685 ARG686 ILE687 ASP688 GLY689 ASP690 LYS691 VAL692 VAL693 GLY694 VAL695 GLN696 LEU697 ALA698 ASP699 ARG700 ILE701 VAL702 THR703 PHE704 SER705 LYS706 THR707 SER708 GLU709 THR710 VAL711 ASP712 ARG713 PRO714 PHE715 GLY716 PHE717 SER718 VAL719 VAL720 GLY721 LYS722 GLY723 THR724 PHE725 LYS726 PHE727 VAL728 MSE729 THR730 ASP731 LEU732 LEU733 PRO734 GLY735 THR736 TRP737 GLN738 VAL739 LEU740 LYS741 ASP742 GLY743 LYS744 ILE745 LEU746 TYR747 PRO748 ALA749 LEU750 SER751 ALA752 LYS753 GLY754 ASP755 ASP756 GLY757 ALA758 LEU759 TYR760 PHE761 GLU762 GLY763 THR764 GLU765 GLY766 THR767 TYR768 ARG769 PHE770 LEU771 ARG772 |
Unit 2 | ASP30 VAL31 VAL32 TRP33 LYS34 ASP35 VAL36 ASP37 GLY38 VAL39 SER40 MSE41 PRO42 ILE43 PRO44 PRO45 LYS46 THR47 HIS48 PRO49 ARG50 LEU51 TYR52 LEU53 ARG54 GLU55 GLN56 GLN57 VAL58 PRO59 ASP60 LEU61 LYS62 ASN63 ARG64 MSE65 ASN66 ASP67 PRO68 LYS69 LEU70 LYS71 LYS72 VAL73 TRP74 ALA75 ASP76 MSE77 ILE78 LYS79 MSE80 GLN81 GLU82 ASP83 TRP84 LYS85 PRO86 ALA87 ASP88 ILE89 PRO90 GLU91 VAL92 LYS93 ASP94 PHE95 ARG96 PHE97 TYR98 PHE99 ASN100 GLN101 LYS102 GLY103 LEU104 THR105 VAL106 ARG107 VAL108 GLU109 LEU110 MSE111 ALA112 LEU113 ASN114 TYR115 LEU116 MSE117 THR118 LYS119 ASP120 PRO121 LYS122 VAL123 GLY124 ARG125 GLU126 ALA127 ILE128 THR129 SER130 ILE131 ILE132 ASP133 THR134 LEU135 GLU136 THR137 ALA138 THR139 PHE140 LYS141 PRO142 ALA143 GLY144 ASP145 ILE146 SER147 ARG148 GLY149 ILE150 GLY151 LEU152 PHE153 MSE154 VAL155 THR156 GLY157 ALA158 ILE159 VAL160 TYR161 ASP162 TRP163 CYS164 TYR165 ASP166 GLN167 LEU168 LYS169 PRO170 GLU171 GLU172 LYS173 THR174 ARG175 PHE176 VAL177 LYS178 ALA179 PHE180 VAL181 ARG182 LEU183 ALA184 LYS185 MSE186 LEU187 GLU188 CYS189 GLY190 TYR191 PRO192 PRO193 VAL194 LYS195 ASP196 LYS197 SER198 ILE199 VAL200 GLY201 HIS202 ALA203 SER204 GLU205 TRP206 MSE207 ILE208 MSE209 ARG210 ASP211 LEU212 LEU213 SER214 VAL215 GLY216 ILE217 ALA218 ILE219 TYR220 ASP221 GLU222 PHE223 PRO224 GLU225 MSE226 TYR227 ASN228 LEU229 ALA230 ALA231 GLY232 ARG233 PHE234 PHE235 LYS236 GLU237 HIS238 LEU239 VAL240 ALA241 ARG242 ASN243 TRP244 PHE245 TYR246 PRO247 SER248 HIS249 ASN250 TYR251 HIS252 GLN253 GLY254 MSE255 SER256 TYR257 LEU258 ASN259 VAL260 ARG261 PHE262 THR263 ASN264 ASP265 LEU266 PHE267 ALA268 LEU269 TRP270 ILE271 LEU272 ASP273 ARG274 MSE275 GLY276 ALA277 GLY278 ASN279 VAL280 PHE281 ASN282 PRO283 GLY284 GLN285 GLN286 PHE287 ILE288 LEU289 TYR290 ASP291 ALA292 ILE293 TYR294 LYS295 ARG296 ARG297 PRO298 ASP299 GLY300 GLN301 ILE302 LEU303 ALA304 GLY305 GLY306 ASP307 VAL308 ASP309 TYR310 SER311 ARG312 LYS313 LYS314 PRO315 LYS316 TYR317 TYR318 THR319 MSE320 PRO321 ALA322 LEU323 LEU324 ALA325 GLY326 SER327 TYR328 TYR329 LYS330 ASP331 GLU332 TYR333 LEU334 ASN335 TYR336 GLU337 PHE338 LEU339 LYS340 ASP341 PRO342 ASN343 VAL344 GLU345 PRO346 HIS347 CYS348 LYS349 LEU350 PHE351 GLU352 PHE353 LEU354 TRP355 ARG356 ASP357 THR358 GLN359 LEU360 GLY361 SER362 ARG363 LYS364 PRO365 ASP366 ASP367 LEU368 PRO369 LEU370 SER371 ARG372 TYR373 SER374 GLY375 SER376 PRO377 PHE378 GLY379 TRP380 MSE381 ILE382 ALA383 ARG384 THR385 GLY386 TRP387 GLY388 PRO389 GLU390 SER391 VAL392 ILE393 ALA394 GLU395 MSE396 LYS397 VAL398 ASN399 GLU400 TYR401 SER402 PHE403 LEU404 ASN405 HIS406 GLN407 HIS408 GLN409 ASP410 ALA411 GLY412 ALA413 PHE414 GLN415 ILE416 TYR417 TYR418 LYS419 GLY420 PRO421 LEU422 ALA423 ILE424 ASP425 ALA426 GLY427 SER428 TYR429 THR430 GLY431 SER432 SER433 GLY434 GLY435 TYR436 ASN437 SER438 PRO439 HIS440 ASN441 LYS442 ASN443 PHE444 PHE445 LYS446 ARG447 THR448 ILE449 ALA450 HIS451 ASN452 SER453 LEU454 LEU455 ILE456 TYR457 ASP458 PRO459 LYS460 GLU461 THR462 PHE463 SER464 SER465 SER466 GLY467 TYR468 GLY469 GLY470 SER471 ASP472 HIS473 THR474 ASP475 PHE476 ALA477 ALA478 ASN479 ASP480 GLY481 GLY482 GLN483 ARG484 LEU485 PRO486 GLY487 LYS488 GLY489 TRP490 ILE491 ALA492 PRO493 ARG494 ASP495 LEU496 LYS497 GLU498 MSE499 LEU500 ALA501 GLY502 ASP503 PHE504 ARG505 THR506 GLY507 LYS508 ILE509 LEU510 ALA511 GLN512 GLY513 PHE514 GLY515 PRO516 ASP517 ASN518 GLN519 THR520 PRO521 ASP522 TYR523 THR524 TYR525 LEU526 LYS527 GLY528 ASP529 ILE530 THR531 ALA532 ALA533 TYR534 SER535 ALA536 LYS537 VAL538 LYS539 GLU540 VAL541 LYS542 ARG543 SER544 PHE545 LEU546 PHE547 LEU548 ASN549 LEU550 LYS551 ASP552 ALA553 LYS554 VAL555 PRO556 ALA557 ALA558 MSE559 ILE560 VAL561 PHE562 ASP563 LYS564 VAL565 VAL566 ALA567 SER568 ASN569 PRO570 ASP571 PHE572 LYS573 LYS574 PHE575 TRP576 LEU577 LEU578 HIS579 SER580 ILE581 GLU582 GLN583 PRO584 GLU585 ILE586 LYS587 GLY588 ASN589 GLN590 ILE591 THR592 ILE593 LYS594 ARG595 THR596 LYS597 ASN598 GLY599 ASP600 SER601 GLY602 MSE603 LEU604 VAL605 ASN606 THR607 ALA608 LEU609 LEU610 PRO611 ASP612 ALA613 ALA614 ASN615 SER616 ASN617 ILE618 THR619 SER620 ILE621 GLY622 GLY623 LYS624 GLY625 LYS626 ASP627 PHE628 TRP629 VAL630 PHE631 GLY632 THR633 ASN634 TYR635 THR636 ASN637 ASP638 PRO639 LYS640 PRO641 GLY642 THR643 ASP644 GLU645 ALA646 LEU647 GLU648 ARG649 GLY650 GLU651 TRP652 ARG653 VAL654 GLU655 ILE656 THR657 PRO658 LYS659 LYS660 ALA661 ALA662 ALA663 GLU664 ASP665 TYR666 TYR667 LEU668 ASN669 VAL670 ILE671 GLN672 ILE673 ALA674 ASP675 ASN676 THR677 GLN678 GLN679 LYS680 LEU681 HIS682 GLU683 VAL684 LYS685 ARG686 ILE687 ASP688 GLY689 ASP690 LYS691 VAL692 VAL693 GLY694 VAL695 GLN696 LEU697 ALA698 ASP699 ARG700 ILE701 VAL702 THR703 PHE704 SER705 LYS706 THR707 SER708 GLU709 THR710 VAL711 ASP712 ARG713 PRO714 PHE715 GLY716 PHE717 SER718 VAL719 VAL720 GLY721 LYS722 GLY723 THR724 PHE725 LYS726 PHE727 VAL728 MSE729 THR730 ASP731 LEU732 LEU733 PRO734 GLY735 THR736 TRP737 GLN738 VAL739 LEU740 LYS741 ASP742 GLY743 LYS744 ILE745 LEU746 TYR747 PRO748 ALA749 LEU750 SER751 ALA752 LYS753 GLY754 ASP755 ASP756 GLY757 ALA758 LEU759 TYR760 PHE761 GLU762 GLY763 THR764 GLU765 GLY766 THR767 TYR768 ARG769 PHE770 LEU771 ARG772 |
Unit 3 | SGN1 UAP2 |
Unit 4 | SGN1 UAP2 |
Unit 5 | ZN1 |
Unit 6 | ZN2 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |