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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RNASE Z/TRNA(THR) COMPLEX
Keywords PROTEIN-TRNA COMPLEX; ZINC-DEPENDENT METAL HYDROLASE; TRNA M HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2FK6     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    R 53 1125 0
2  Protein   RIBONUCLEASE Z  A 307 2395 0
3  Ligand   RIBONUCLEASE Z  A 3 0 19
4 Water     11 0 11
total       374 3520 30

Proteins
Unit 2 MET1 GLU2 LEU3 LEU4 PHE5 LEU6 GLY7 THR8 GLY9 ALA10 GLY11 ILE12 PRO13 ALA14 LYS15 ALA16 ARG17 ASN18 VAL19 THR20 SER21 VAL22 ALA23 LEU24 LYS25 LEU26 LEU27 GLU28 GLU29 ARG30 ARG31 SER32 VAL33 TRP34 LEU35 PHE36 ASP37 CYS38 GLY39 GLU40 ALA41 THR42 GLN43 HIS44 GLN45 MET46 LEU47 HIS48 THR49 THR50 ILE51 LYS52 PRO53 ARG54 LYS55 ILE56 GLU57 LYS58 ILE59 PHE60 ILE61 THR62 HIS63 MET64 ALA65 GLY66 ASP67 HIS68 VAL69 TYR70 GLY71 LEU72 PRO73 GLY74 LEU75 LEU76 GLY77 SER78 ARG79 SER80 PHE81 GLN82 GLY83 GLY84 GLU85 ASP86 GLU87 LEU88 THR89 VAL90 TYR91 GLY92 PRO93 LYS94 GLY95 ILE96 LYS97 ALA98 PHE99 ILE100 GLU101 THR102 SER103 LEU104 ALA105 VAL106 THR107 LYS108 THR109 HIS110 LEU111 THR112 TYR113 PRO114 LEU115 ALA116 ILE117 GLN118 GLU119 ILE120 GLU121 GLU122 GLY123 ILE124 VAL125 PHE126 GLU127 ASP128 ASP129 GLN130 PHE131 ILE132 VAL133 THR134 ALA135 VAL136 SER137 VAL138 ILE139 HIS140 GLY141 VAL142 GLU143 ALA144 PHE145 GLY146 TYR147 ARG148 VAL149 GLN150 GLU151 LYS152 ASP153 VAL154 PRO155 GLY156 SER157 LEU158 LYS159 ALA160 ASP161 VAL162 LEU163 LYS164 GLU165 MET166 ASN167 ILE168 PRO169 PRO170 GLY171 PRO172 VAL173 TYR174 GLN175 LYS176 ILE177 LYS178 LYS179 GLY180 GLU181 THR182 VAL183 THR184 LEU185 GLU186 ASP187 GLY188 ARG189 ILE190 ILE191 ASN192 GLY193 ASN194 ASP195 PHE196 LEU197 GLU198 PRO199 PRO200 LYS201 LYS202 GLY203 ARG204 SER205 VAL206 VAL207 PHE208 SER209 GLY210 ASP211 THR212 ARG213 VAL214 SER215 ASP216 LYS217 LEU218 LYS219 GLU220 LEU221 ALA222 ARG223 ASP224 CYS225 ASP226 VAL227 MET228 VAL229 HIS230 GLU231 ALA232 THR233 PHE234 ALA235 LYS236 GLU237 ASP238 ARG239 LYS240 LEU241 ALA242 TYR243 ASP244 TYR245 TYR246 HIS247 SER248 THR249 THR250 GLU251 GLN252 ALA253 ALA254 VAL255 THR256 ALA257 LYS258 GLU259 ALA260 ARG261 ALA262 LYS263 GLN264 LEU265 ILE266 LEU267 THR268 HIS269 ILE270 SER271 ALA272 ARG273 TYR274 GLN275 GLY276 ASP277 ALA278 SER279 LEU280 GLU281 LEU282 GLN283 LYS284 GLU285 ALA286 VAL287 ASP288 VAL289 PHE290 PRO291 ASN292 SER293 VAL294 ALA295 ALA296 TYR297 ASP298 PHE299 LEU300 GLU301 VAL302 ASN303 VAL304 PRO305 ARG306 GLY307

Nucleic acids
Unit 1 G1 C2 U3 U4 C5 C6 A7 U8 A9 G10 C11 U12 C13 A14 G15 C16 A17 G18 G19 U20 A21 G22 A23 G24 C25 G46 U47 C48 A49 G50 C51 G52 G53 U54 U55 C56 G57 A58 G59 C60 C61 C62 G63 C64 U65 U66 G67 G68 A69 A70 G71 C72 U73

Ligands
Unit 3 ZN401 GOL501 MES801

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany