2FIK - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF A MICROBIAL GLYCOSPHINGOLIPID BOUND TO MOUSE CD
• Keywords: NKT CELLS, CD1D, MHC-FOLD, IMMUNE SYSTEM, BACTERIAL ANTIGEN,
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2FIK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	T-CELL SURFACE GLYCOPROTEIN CD1D1	A	265	2129	0
2	Protein	B(2)-MICROGLOBULIN	B	97	801	0
3	Ligand		C	2	0	28
4	Ligand	T-CELL SURFACE GLYCOPROTEIN CD1D1	A	4	0	94
5	Water			379	0	379
total				747	2930	501

Proteins

Unit 1

TYR 8 THR 9 PHE 10 ARG 11 CYS 12 LEU 13 GLN 14 MET 15 SER 16 SER 17 PHE 18 ALA 19 ASN 20 ARG 21 SER 22 TRP 23 SER 24 ARG 25 THR 26 ASP 27 SER 28 VAL 29 VAL 30 TRP 31 LEU 32 GLY 33 ASP 34 LEU 35 GLN 36 THR 37 HIS 38 ARG 39 TRP 40 SER 41 ASN 42 ASP 43 SER 44 ALA 45 THR 46 ILE 47 SER 48 PHE 49 THR 50 LYS 51 PRO 52 TRP 53 SER 54 GLN 55 GLY 56 LYS 57 LEU 58 SER 59 ASN 60 GLN 61 GLN 62 TRP 63 GLU 64 LYS 65 LEU 66 GLN 67 HIS 68 MET 69 PHE 70 GLN 71 VAL 72 TYR 73 ARG 74 VAL 75 SER 76 PHE 77 THR 78 ARG 79 ASP 80 ILE 81 GLN 82 GLU 83 LEU 84 VAL 85 LYS 86 TYR 94 PRO 95 ILE 96 GLU 97 ILE 98 GLN 99 LEU 100 SER 101 ALA 102 GLY 103 CYS 104 GLU 105 MET 106 TYR 107 PRO 108 GLY 109 ASN 110 ALA 111 SER 112 GLU 113 SER 114 PHE 115 LEU 116 HIS 117 VAL 118 ALA 119 PHE 120 GLN 121 GLY 122 LYS 123 TYR 124 VAL 125 VAL 126 ARG 127 PHE 128 TRP 129 GLY 130 THR 131 SER 132 TRP 133 GLN 134 THR 135 VAL 136 PRO 137 GLY 138 ALA 139 PRO 140 SER 141 TRP 142 LEU 143 ASP 144 LEU 145 PRO 146 ILE 147 LYS 148 VAL 149 LEU 150 ASN 151 ALA 152 ASP 153 GLN 154 GLY 155 THR 156 SER 157 ALA 158 THR 159 VAL 160 GLN 161 MET 162 LEU 163 LEU 164 ASN 165 ASP 166 THR 167 CYS 168 PRO 169 LEU 170 PHE 171 VAL 172 ARG 173 GLY 174 LEU 175 LEU 176 GLU 177 ALA 178 GLY 179 LYS 180 SER 181 ASP 182 LEU 183 GLU 184 LYS 185 GLN 186 GLU 187 LYS 188 PRO 189 VAL 190 ALA 191 TRP 192 LEU 193 SER 194 SER 195 VAL 196 PRO 197 SER 198 SER 199 ALA 200 HIS 201 GLY 202 HIS 203 ARG 204 GLN 205 LEU 206 VAL 207 CYS 208 HIS 209 VAL 210 SER 211 GLY 212 PHE 213 TYR 214 PRO 215 LYS 216 PRO 217 VAL 218 TRP 219 VAL 220 MET 221 TRP 222 MET 223 ARG 224 GLY 225 ASP 226 GLN 227 GLU 228 GLN 229 GLN 230 GLY 231 THR 232 HIS 233 ARG 234 GLY 235 ASP 236 PHE 237 LEU 238 PRO 239 ASN 240 ALA 241 ASP 242 GLU 243 THR 244 TRP 245 TYR 246 LEU 247 GLN 248 ALA 249 THR 250 LEU 251 ASP 252 VAL 253 GLU 254 ALA 255 GLY 256 GLU 257 GLU 258 ALA 259 GLY 260 LEU 261 ALA 262 CYS 263 ARG 264 VAL 265 LYS 266 HIS 267 SER 268 SER 269 LEU 270 GLY 271 GLY 272 GLN 273 ASP 274 ILE 275 ILE 276 LEU 277 TYR 278 TRP 279

Unit 2

GLN 2 LYS 3 THR 4 PRO 5 GLN 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 PRO 15 GLU 16 ASN 17 GLY 18 LYS 19 PRO 20 ASN 21 ILE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 THR 28 GLN 29 PHE 30 HIS 31 PRO 32 PRO 33 HIS 34 ILE 35 GLU 36 ILE 37 GLN 38 MET 39 LEU 40 LYS 41 ASN 42 GLY 43 LYS 44 LYS 45 ILE 46 PRO 47 LYS 48 VAL 49 GLU 50 MET 51 SER 52 ASP 53 MET 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 ILE 64 LEU 65 ALA 66 HIS 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 THR 75 ASP 76 THR 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 LYS 83 HIS 84 ALA 85 SER 86 MET 87 ALA 88 GLU 89 PRO 90 LYS 91 THR 92 VAL 93 TYR 94 TRP 95 ASP 96 ARG 97 ASP 98

Ligands

Unit 3	NAG 1 NAG 2
Unit 4	NAG 303 NAG 304 GSL 501 PLM 502