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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A BOVINE RABEX-5 FRAGMENT COMPLEXED WIT UBIQUITIN
Keywords ZINC FINGER, HELIX, PROTEIN TURNOVER-ENDOCYTOSIS COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2FIF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN  A 73 582 0
2  Protein   RAB5 GDP/GTP EXCHANGE FACTOR  B 59 495 0
3  Protein   UBIQUITIN  C 73 582 0
4  Protein   RAB5 GDP/GTP EXCHANGE FACTOR  D 58 489 0
5  Protein   UBIQUITIN  E 73 582 0
6  Protein   RAB5 GDP/GTP EXCHANGE FACTOR  F 56 471 0
7  Ligand   UBIQUITIN  A 1 0 5
8  Ligand   RAB5 GDP/GTP EXCHANGE FACTOR  B 1 0 1
9  Ligand   RAB5 GDP/GTP EXCHANGE FACTOR  D 1 0 1
10  Ligand   RAB5 GDP/GTP EXCHANGE FACTOR  F 1 0 1
11 Water     19 0 19
total       415 3201 27

Proteins
Unit 1 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73
Unit 2 SER15 GLU16 LEU17 LEU18 CYS19 LYS20 LYS21 GLY22 CYS23 GLY24 TYR25 TYR26 GLY27 ASN28 PRO29 ALA30 TRP31 GLN32 GLY33 PHE34 CYS35 SER36 LYS37 CYS38 TRP39 ARG40 GLU41 GLU42 TYR43 HIS44 LYS45 ALA46 ARG47 GLN48 LYS49 GLN50 ILE51 GLN52 GLU53 ASP54 TRP55 GLU56 LEU57 ALA58 GLU59 ARG60 LEU61 GLN62 ARG63 GLU64 GLU65 GLU66 GLU67 ALA68 PHE69 ALA70 SER71 SER72 GLN73
Unit 3 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73
Unit 4 GLU16 LEU17 LEU18 CYS19 LYS20 LYS21 GLY22 CYS23 GLY24 TYR25 TYR26 GLY27 ASN28 PRO29 ALA30 TRP31 GLN32 GLY33 PHE34 CYS35 SER36 LYS37 CYS38 TRP39 ARG40 GLU41 GLU42 TYR43 HIS44 LYS45 ALA46 ARG47 GLN48 LYS49 GLN50 ILE51 GLN52 GLU53 ASP54 TRP55 GLU56 LEU57 ALA58 GLU59 ARG60 LEU61 GLN62 ARG63 GLU64 GLU65 GLU66 GLU67 ALA68 PHE69 ALA70 SER71 SER72 GLN73
Unit 5 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73
Unit 6 LEU17 LEU18 CYS19 LYS20 LYS21 GLY22 CYS23 GLY24 TYR25 TYR26 GLY27 ASN28 PRO29 ALA30 TRP31 GLN32 GLY33 PHE34 CYS35 SER36 LYS37 CYS38 TRP39 ARG40 GLU41 GLU42 TYR43 HIS44 LYS45 ALA46 ARG47 GLN48 LYS49 GLN50 ILE51 GLN52 GLU53 ASP54 TRP55 GLU56 LEU57 ALA58 GLU59 ARG60 LEU61 GLN62 ARG63 GLU64 GLU65 GLU66 GLU67 ALA68 PHE69 ALA70 SER71 SER72

Ligands
Unit 7 SO4101
Unit 8 ZN901
Unit 9 ZN902
Unit 10 ZN903

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany